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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1303 |
| AccBSI | CCGCTC | 1 cut(s) | 59 |
| AccI | GTMKAC | 1 cut(s) | 901 |
| AccII | CGCG | 1 cut(s) | 233 |
| AciI | CCGC | 4 cut(s) | 57, 467, 1186, 1230 |
| AclWI | GGATC | 2 cut(s) | 483, 1169 |
| AcsI | RAATTY | 3 cut(s) | 63, 203, 650 |
| AcuI | CTGAAG | 1 cut(s) | 1293 |
| AdeI | CACNNNGTG | 1 cut(s) | 1165 |
| AfaI | GTAC | 4 cut(s) | 135, 718, 1330, 1376 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 125, 406, 614, 799, 1185 |
| AflIII | ACRYGT | 1 cut(s) | 231 |
| AgsI | TTSAA | 5 cut(s) | 203, 548, 689, 1035, 1280 |
| AjnI | CCWGG | 1 cut(s) | 364 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 585, 617 |
| AluBI | AGCT | 6 cut(s) | 851, 953, 992, 1046, 1071, 1250 |
| AluI | AGCT | 6 cut(s) | 851, 953, 992, 1046, 1071, 1250 |
| Alw26I | GTCTC | 5 cut(s) | 80, 271, 293, 866, 925 |
| AlwI | GGATC | 2 cut(s) | 483, 1169 |
| ApeKI | GCWGC | 6 cut(s) | 46, 464, 953, 1250, 1261, 1264 |
| ApoI | RAATTY | 3 cut(s) | 63, 203, 650 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1079, 1111 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 154 |
| AspS9I | GGNCC | 8 cut(s) | 116, 210, 605, 710, 737, 764, 791, 818 |
| AsuC2I | CCSGG | 1 cut(s) | 401 |
| AsuHPI | GGTGA | 2 cut(s) | 417, 1184 |
| AvaII | GGWCC | 1 cut(s) | 210 |
| AxyI | CCTNAGG | 1 cut(s) | 660 |
| BbsI | GAAGAC | 1 cut(s) | 642 |
| BbvI | GCAGC | 6 cut(s) | 58, 451, 940, 1237, 1273, 1276 |
| BceAI | ACGGC | 1 cut(s) | 1117 |
| BciT130I | CCWGG | 1 cut(s) | 366 |
| BcnI | CCSGG | 1 cut(s) | 401 |
| BcoDI | GTCTC | 5 cut(s) | 80, 271, 293, 866, 925 |
| BfaI | CTAG | 4 cut(s) | 147, 293, 881, 1014 |
| BfmI | CTRYAG | 2 cut(s) | 954, 1074 |
| BfuAI | ACCTGC | 1 cut(s) | 1303 |
| BisI | GCNGC | 6 cut(s) | 47, 465, 954, 1251, 1262, 1265 |
| BlsI | GCNGC | 6 cut(s) | 48, 466, 955, 1252, 1263, 1266 |
| Bme1390I | CCNGG | 2 cut(s) | 366, 401 |
| Bme18I | GGWCC | 1 cut(s) | 210 |
| BmgT120I | GGNCC | 8 cut(s) | 116, 210, 605, 710, 737, 764, 791, 818 |
| BmiI | GGNNCC | 2 cut(s) | 157, 405 |
| BmrFI | CCNGG | 2 cut(s) | 366, 401 |
| BmrI | ACTGGG | 1 cut(s) | 885 |
| BmsI | GCATC | 2 cut(s) | 307, 382 |
| BmuI | ACTGGG | 1 cut(s) | 885 |
| BpiI | GAAGAC | 1 cut(s) | 642 |
| Bpu10I | CCTNAGC | 1 cut(s) | 123 |
| BpuEI | CTTGAG | 1 cut(s) | 527 |
| BpuMI | CCSGG | 1 cut(s) | 401 |
| BsaBI | GATNNNNATC | 2 cut(s) | 474, 1173 |
| BsaI | GGTCTC | 1 cut(s) | 925 |
| BsaJI | CCNNGG | 2 cut(s) | 112, 808 |
| BsaWI | WCCGGW | 1 cut(s) | 406 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 125, 406, 614, 799, 1185 |
| Bse118I | RCCGGY | 1 cut(s) | 820 |
| Bse1I | ACTGG | 4 cut(s) | 644, 880, 935, 1431 |
| Bse21I | CCTNAGG | 1 cut(s) | 660 |
| Bse3DI | GCAATG | 1 cut(s) | 1201 |
| Bse8I | GATNNNNATC | 2 cut(s) | 474, 1173 |
| BseBI | CCWGG | 1 cut(s) | 366 |
| BseDI | CCNNGG | 2 cut(s) | 112, 808 |
| BseJI | GATNNNNATC | 2 cut(s) | 474, 1173 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 125, 406, 614, 799, 1185 |
| BseMI | GCAATG | 1 cut(s) | 1201 |
| BseMII | CTCAG | 5 cut(s) | 137, 188, 651, 1095, 1325 |
| BseNI | ACTGG | 4 cut(s) | 644, 880, 935, 1431 |
| BseRI | GAGGAG | 3 cut(s) | 545, 1238, 1414 |
| BseXI | GCAGC | 6 cut(s) | 58, 451, 940, 1237, 1273, 1276 |
| BseYI | CCCAGC | 1 cut(s) | 1208 |
| BsgI | GTGCAG | 1 cut(s) | 1236 |
| Bsh1236I | CGCG | 1 cut(s) | 233 |
| BsiSI | CCGG | 3 cut(s) | 401, 407, 821 |
| BslFI | GGGAC | 3 cut(s) | 335, 564, 641 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 125, 406, 614, 799, 1185 |
| BsmAI | GTCTC | 5 cut(s) | 80, 271, 293, 866, 925 |
| BsmFI | GGGAC | 3 cut(s) | 335, 564, 641 |
| BsmI | GAATGC | 1 cut(s) | 1417 |
| Bso31I | GGTCTC | 1 cut(s) | 925 |
| Bsp1407I | TGTACA | 1 cut(s) | 133 |
| Bsp143I | GATC | 3 cut(s) | 475, 1123, 1174 |
| Bsp19I | CCATGG | 1 cut(s) | 808 |
| BspACI | CCGC | 4 cut(s) | 57, 467, 1186, 1230 |
| BspCNI | CTCAG | 5 cut(s) | 136, 187, 652, 1094, 1324 |
| BspFNI | CGCG | 1 cut(s) | 233 |
| BspLI | GGNNCC | 2 cut(s) | 157, 405 |
| BspMAI | CTGCAG | 1 cut(s) | 958 |
| BspMI | ACCTGC | 1 cut(s) | 1303 |
| BspPI | GGATC | 2 cut(s) | 483, 1169 |
| BspTNI | GGTCTC | 1 cut(s) | 925 |
| BsrBI | CCGCTC | 1 cut(s) | 59 |
| BsrDI | GCAATG | 1 cut(s) | 1201 |
| BsrFI | RCCGGY | 1 cut(s) | 820 |
| BsrGI | TGTACA | 1 cut(s) | 133 |
| BsrI | ACTGG | 4 cut(s) | 644, 880, 935, 1431 |
| BssAI | RCCGGY | 1 cut(s) | 820 |
| BssECI | CCNNGG | 2 cut(s) | 112, 808 |
| BssMI | GATC | 3 cut(s) | 475, 1123, 1174 |
| BssT1I | CCWWGG | 1 cut(s) | 808 |
| Bst2UI | CCWGG | 1 cut(s) | 366 |
| Bst4CI | ACNGT | 2 cut(s) | 304, 575 |
| Bst6I | CTCTTC | 5 cut(s) | 168, 337, 971, 995, 1197 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1412 |
| BstAUI | TGTACA | 1 cut(s) | 133 |
| BstC8I | GCNNGC | 5 cut(s) | 120, 371, 1044, 1188, 1192 |
| BstDEI | CTNAG | 5 cut(s) | 123, 174, 660, 1081, 1311 |
| BstDSI | CCRYGG | 1 cut(s) | 808 |
| BstFNI | CGCG | 1 cut(s) | 233 |
| BstKTI | GATC | 3 cut(s) | 478, 1126, 1177 |
| BstMAI | GTCTC | 5 cut(s) | 80, 271, 293, 866, 925 |
| BstMBI | GATC | 3 cut(s) | 475, 1123, 1174 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1304, 1412 |
| BstNI | CCWGG | 1 cut(s) | 366 |
| BstNSI | RCATGY | 1 cut(s) | 140 |
| BstSCI | CCNGG | 2 cut(s) | 364, 399 |
| BstSFI | CTRYAG | 2 cut(s) | 954, 1074 |
| BstUI | CGCG | 1 cut(s) | 233 |
| BstV1I | GCAGC | 6 cut(s) | 58, 451, 940, 1237, 1273, 1276 |
| BstV2I | GAAGAC | 1 cut(s) | 642 |
| BstX2I | RGATCY | 1 cut(s) | 475 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 815 |
| BstYI | RGATCY | 1 cut(s) | 475 |
| Bsu36I | CCTNAGG | 1 cut(s) | 660 |
| BtgI | CCRYGG | 1 cut(s) | 808 |
| BtsIMutI | CAGTG | 1 cut(s) | 1269 |
| BveI | ACCTGC | 1 cut(s) | 1303 |
| Cac8I | GCNNGC | 5 cut(s) | 120, 371, 1044, 1188, 1192 |
| Cfr10I | RCCGGY | 1 cut(s) | 820 |
| Cfr13I | GGNCC | 8 cut(s) | 116, 210, 605, 710, 737, 764, 791, 818 |
| Csp6I | GTAC | 4 cut(s) | 134, 717, 1329, 1375 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1258, 1293 |
| CviAII | CATG | 6 cut(s) | 137, 194, 728, 782, 809, 845 |
| CviQI | GTAC | 4 cut(s) | 134, 717, 1329, 1375 |
| DdeI | CTNAG | 5 cut(s) | 123, 174, 660, 1081, 1311 |
| DpnI | GATC | 3 cut(s) | 477, 1125, 1176 |
| DpnII | GATC | 3 cut(s) | 475, 1123, 1174 |
| DraIII | CACNNNGTG | 1 cut(s) | 1165 |
| Eam1104I | CTCTTC | 5 cut(s) | 168, 337, 971, 995, 1197 |
| EarI | CTCTTC | 5 cut(s) | 168, 337, 971, 995, 1197 |
| Eco130I | CCWWGG | 1 cut(s) | 808 |
| Eco31I | GGTCTC | 1 cut(s) | 925 |
| Eco47I | GGWCC | 1 cut(s) | 210 |
| Eco57I | CTGAAG | 1 cut(s) | 1293 |
| Eco81I | CCTNAGG | 1 cut(s) | 660 |
| EcoO109I | RGGNCCY | 1 cut(s) | 116 |
| EcoRI | GAATTC | 1 cut(s) | 63 |
| EcoRII | CCWGG | 1 cut(s) | 364 |
| EcoT14I | CCWWGG | 1 cut(s) | 808 |
| ErhI | CCWWGG | 1 cut(s) | 808 |
| FaeI | CATG | 6 cut(s) | 140, 197, 731, 785, 812, 848 |
| FaqI | GGGAC | 3 cut(s) | 335, 564, 641 |
| FatI | CATG | 6 cut(s) | 136, 193, 727, 781, 808, 844 |
| FauI | CCCGC | 1 cut(s) | 1179 |
| FblI | GTMKAC | 1 cut(s) | 901 |
| Fnu4HI | GCNGC | 6 cut(s) | 47, 465, 954, 1251, 1262, 1265 |
| Fsp4HI | GCNGC | 6 cut(s) | 47, 465, 954, 1251, 1262, 1265 |
| FspBI | CTAG | 4 cut(s) | 147, 293, 881, 1014 |
| GluI | GCNGC | 6 cut(s) | 47, 465, 954, 1251, 1262, 1265 |
| GsaI | CCCAGC | 1 cut(s) | 1212 |
| HapII | CCGG | 3 cut(s) | 401, 407, 821 |
| Hin1II | CATG | 6 cut(s) | 140, 197, 731, 785, 812, 848 |
| HincII | GTYRAC | 2 cut(s) | 919, 1150 |
| HindII | GTYRAC | 2 cut(s) | 919, 1150 |
| HinfI | GANTC | 8 cut(s) | 190, 289, 356, 623, 643, 1079, 1112, 1226 |
| HpaII | CCGG | 3 cut(s) | 401, 407, 821 |
| HphI | GGTGA | 2 cut(s) | 417, 1184 |
| Hpy166II | GTNNAC | 3 cut(s) | 902, 919, 1150 |
| Hpy188I | TCNGA | 8 cut(s) | 82, 113, 177, 262, 628, 1066, 1084, 1117 |
| Hpy188III | TCNNGA | 9 cut(s) | 68, 293, 395, 449, 479, 545, 647, 827, 1035 |
| Hpy8I | GTNNAC | 3 cut(s) | 902, 919, 1150 |
| Hpy99I | CGWCG | 1 cut(s) | 258 |
| HpyCH4III | ACNGT | 2 cut(s) | 304, 575 |
| HpyCH4V | TGCA | 7 cut(s) | 284, 373, 956, 1219, 1240, 1253, 1261 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1304, 1412 |
| HpyF3I | CTNAG | 5 cut(s) | 123, 174, 660, 1081, 1311 |
| Hsp92II | CATG | 6 cut(s) | 140, 197, 731, 785, 812, 848 |
| Kzo9I | GATC | 3 cut(s) | 475, 1123, 1174 |
| LmnI | GCTCC | 4 cut(s) | 9, 325, 1339, 1427 |
| Lsp1109I | GCAGC | 6 cut(s) | 58, 451, 940, 1237, 1273, 1276 |
| LweI | GCATC | 2 cut(s) | 307, 382 |
| MaeI | CTAG | 4 cut(s) | 147, 293, 881, 1014 |
| MaeIII | GTNAC | 2 cut(s) | 227, 1287 |
| MalI | GATC | 3 cut(s) | 477, 1125, 1176 |
| MbiI | CCGCTC | 1 cut(s) | 59 |
| MboI | GATC | 3 cut(s) | 475, 1123, 1174 |
| MflI | RGATCY | 1 cut(s) | 475 |
| MluCI | AATT | 7 cut(s) | 63, 203, 457, 556, 650, 1049, 1358 |
| MluI | ACGCGT | 1 cut(s) | 231 |
| MlyI | GAGTC | 4 cut(s) | 184, 617, 1073, 1235 |
| MmeI | TCCRAC | 1 cut(s) | 1361 |
| MroXI | GAANNNNTTC | 1 cut(s) | 154 |
| MseI | TTAA | 2 cut(s) | 306, 984 |
| MslI | CAYNNNNRTG | 5 cut(s) | 18, 732, 759, 786, 813 |
| MspI | CCGG | 3 cut(s) | 401, 407, 821 |
| MspR9I | CCNGG | 2 cut(s) | 366, 401 |
| Mva1269I | GAATGC | 1 cut(s) | 1417 |
| MvaI | CCWGG | 1 cut(s) | 366 |
| MvnI | CGCG | 1 cut(s) | 233 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1304, 1412 |
| NciI | CCSGG | 1 cut(s) | 401 |
| NcoI | CCATGG | 1 cut(s) | 808 |
| NdeII | GATC | 3 cut(s) | 475, 1123, 1174 |
| NlaIII | CATG | 6 cut(s) | 140, 197, 731, 785, 812, 848 |
| NlaIV | GGNNCC | 2 cut(s) | 157, 405 |
| NmuCI | GTSAC | 2 cut(s) | 227, 1287 |
| NspI | RCATGY | 1 cut(s) | 140 |
| PctI | GAATGC | 1 cut(s) | 1417 |
| PdmI | GAANNNNTTC | 1 cut(s) | 154 |
| PfeI | GAWTC | 4 cut(s) | 289, 356, 643, 1112 |
| PkrI | GCNGC | 6 cut(s) | 48, 466, 955, 1252, 1263, 1266 |
| PleI | GAGTC | 4 cut(s) | 184, 617, 1073, 1234 |
| PpsI | GAGTC | 4 cut(s) | 184, 617, 1073, 1234 |
| Psp6I | CCWGG | 1 cut(s) | 364 |
| PspFI | CCCAGC | 1 cut(s) | 1208 |
| PspGI | CCWGG | 1 cut(s) | 364 |
| PspN4I | GGNNCC | 2 cut(s) | 157, 405 |
| PspPI | GGNCC | 8 cut(s) | 116, 210, 605, 710, 737, 764, 791, 818 |
| PstI | CTGCAG | 1 cut(s) | 958 |
| PsuI | RGATCY | 1 cut(s) | 475 |
| RsaI | GTAC | 4 cut(s) | 135, 718, 1330, 1376 |
| RsaNI | GTAC | 4 cut(s) | 134, 717, 1329, 1375 |
| RseI | CAYNNNNRTG | 5 cut(s) | 18, 732, 759, 786, 813 |
| SaqAI | TTAA | 2 cut(s) | 306, 984 |
| SatI | GCNGC | 6 cut(s) | 47, 465, 954, 1251, 1262, 1265 |
| Sau3AI | GATC | 3 cut(s) | 475, 1123, 1174 |
| Sau96I | GGNCC | 8 cut(s) | 116, 210, 605, 710, 737, 764, 791, 818 |
| SchI | GAGTC | 4 cut(s) | 184, 617, 1073, 1235 |
| ScrFI | CCNGG | 2 cut(s) | 366, 401 |
| SfaNI | GCATC | 2 cut(s) | 307, 382 |
| SfcI | CTRYAG | 2 cut(s) | 954, 1074 |
| SinI | GGWCC | 1 cut(s) | 210 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 18, 732, 759, 786, 813 |
| SmlI | CTYRAG | 1 cut(s) | 506 |
| SmoI | CTYRAG | 1 cut(s) | 506 |
| Sse9I | AATT | 7 cut(s) | 63, 203, 457, 556, 650, 1049, 1358 |
| SsiI | CCGC | 4 cut(s) | 57, 467, 1186, 1230 |
| SspMI | CTAG | 4 cut(s) | 147, 293, 881, 1014 |
| StyD4I | CCNGG | 2 cut(s) | 364, 399 |
| StyI | CCWWGG | 1 cut(s) | 808 |
| TaaI | ACNGT | 2 cut(s) | 304, 575 |
| TaqI | TCGA | 2 cut(s) | 61, 480 |
| TaqII | GACCGA | 1 cut(s) | 198 |
| TasI | AATT | 7 cut(s) | 63, 203, 457, 556, 650, 1049, 1358 |
| TatI | WGTACW | 2 cut(s) | 133, 1328 |
| TfiI | GAWTC | 4 cut(s) | 289, 356, 643, 1112 |
| Tru1I | TTAA | 2 cut(s) | 306, 984 |
| Tru9I | TTAA | 2 cut(s) | 306, 984 |
| TscAI | CASTG | 1 cut(s) | 1276 |
| TseFI | GTSAC | 2 cut(s) | 227, 1287 |
| TseI | GCWGC | 6 cut(s) | 46, 464, 953, 1250, 1261, 1264 |
| Tsp45I | GTSAC | 2 cut(s) | 227, 1287 |
| TspDTI | ATGAA | 8 cut(s) | 36, 85, 155, 513, 645, 861, 1146, 1351 |
| TspGWI | ACGGA | 1 cut(s) | 734 |
| TspRI | CASTG | 1 cut(s) | 1276 |
| VpaK11BI | GGWCC | 1 cut(s) | 210 |
| XapI | RAATTY | 3 cut(s) | 63, 203, 650 |
| XbaI | TCTAGA | 1 cut(s) | 292 |
| XceI | RCATGY | 1 cut(s) | 140 |
| XmiI | GTMKAC | 1 cut(s) | 901 |
| XmnI | GAANNNNTTC | 1 cut(s) | 154 |
| XspI | CTAG | 4 cut(s) | 147, 293, 881, 1014 |