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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 401, 1739 |
| AarI | CACCTGC | 1 cut(s) | 361 |
| Acc36I | ACCTGC | 5 cut(s) | 163, 361, 880, 1059, 1514 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1391, 1989 |
| AccI | GTMKAC | 3 cut(s) | 18, 1035, 1280 |
| AciI | CCGC | 1 cut(s) | 734 |
| AclWI | GGATC | 6 cut(s) | 35, 48, 274, 625, 787, 2493 |
| AcoI | YGGCCR | 2 cut(s) | 2545, 2549 |
| AcsI | RAATTY | 5 cut(s) | 905, 914, 965, 1217, 2352 |
| AcuI | CTGAAG | 1 cut(s) | 2289 |
| AfaI | GTAC | 9 cut(s) | 153, 228, 233, 388, 772, 1487, 2602, 2619, 2910 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 13, 658, 1391, 1989, 2392, 2477 |
| AflIII | ACRYGT | 2 cut(s) | 831, 1408 |
| AjnI | CCWGG | 4 cut(s) | 411, 549, 1846, 2542 |
| AleI | CACNNNNGTG | 2 cut(s) | 1190, 2632 |
| Alw21I | GWGCWC | 4 cut(s) | 797, 1161, 1169, 1558 |
| Alw26I | GTCTC | 7 cut(s) | 307, 934, 1649, 1807, 1908, 2067, 2377 |
| Alw44I | GTGCAC | 1 cut(s) | 1165 |
| AlwI | GGATC | 6 cut(s) | 35, 48, 274, 625, 787, 2493 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1806, 1970 |
| Ama87I | CYCGRG | 1 cut(s) | 2596 |
| AoxI | GGCC | 6 cut(s) | 1314, 1500, 1976, 2545, 2549, 2859 |
| ApaI | GGGCCC | 1 cut(s) | 1504 |
| ApaLI | GTGCAC | 1 cut(s) | 1165 |
| ApeKI | GCWGC | 6 cut(s) | 443, 992, 1334, 1381, 2225, 2870 |
| ApoI | RAATTY | 5 cut(s) | 905, 914, 965, 1217, 2352 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1076, 1108, 1648, 1680, 2355, 2387 |
| AspS9I | GGNCC | 9 cut(s) | 455, 869, 1500, 1501, 1783, 1864, 1977, 2305, 2398 |
| AsuC2I | CCSGG | 2 cut(s) | 1726, 2117 |
| AsuHPI | GGTGA | 5 cut(s) | 40, 1204, 2131, 2252, 2513 |
| AsuII | TTCGAA | 1 cut(s) | 1109 |
| AvaI | CYCGRG | 1 cut(s) | 2596 |
| AvaII | GGWCC | 6 cut(s) | 455, 869, 1783, 1864, 2305, 2398 |
| BaeGI | GKGCMC | 2 cut(s) | 1169, 1504 |
| BamHI | GGATCC | 1 cut(s) | 40 |
| BanII | GRGCYC | 3 cut(s) | 897, 1358, 1504 |
| BauI | CACGAG | 1 cut(s) | 1121 |
| BbsI | GAAGAC | 1 cut(s) | 2441 |
| Bbv12I | GWGCWC | 4 cut(s) | 797, 1161, 1169, 1558 |
| BbvI | GCAGC | 6 cut(s) | 430, 979, 1346, 1368, 2212, 2882 |
| BciT130I | CCWGG | 4 cut(s) | 413, 551, 1848, 2544 |
| BciVI | GTATCC | 2 cut(s) | 595, 2643 |
| BclI | TGATCA | 1 cut(s) | 1137 |
| BcnI | CCSGG | 2 cut(s) | 1726, 2117 |
| BcoDI | GTCTC | 7 cut(s) | 307, 934, 1649, 1807, 1908, 2067, 2377 |
| BfaI | CTAG | 5 cut(s) | 447, 1200, 2079, 2609, 2654 |
| BfmI | CTRYAG | 2 cut(s) | 1318, 2229 |
| BfuAI | ACCTGC | 5 cut(s) | 163, 361, 880, 1059, 1514 |
| BfuI | GTATCC | 2 cut(s) | 595, 2643 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1322, 2867 |
| BglII | AGATCT | 1 cut(s) | 529 |
| BisI | GCNGC | 6 cut(s) | 444, 993, 1335, 1382, 2226, 2871 |
| BlsI | GCNGC | 6 cut(s) | 445, 994, 1336, 1383, 2227, 2872 |
| BmcAI | AGTACT | 2 cut(s) | 388, 772 |
| Bme1390I | CCNGG | 6 cut(s) | 413, 551, 1726, 1848, 2117, 2544 |
| Bme18I | GGWCC | 6 cut(s) | 455, 869, 1783, 1864, 2305, 2398 |
| BmeT110I | CYCGRG | 1 cut(s) | 2596 |
| BmgT120I | GGNCC | 9 cut(s) | 455, 869, 1500, 1501, 1783, 1864, 1977, 2305, 2398 |
| BmrFI | CCNGG | 6 cut(s) | 413, 551, 1726, 1848, 2117, 2544 |
| BmrI | ACTGGG | 2 cut(s) | 282, 399 |
| BmsI | GCATC | 6 cut(s) | 118, 667, 1104, 1597, 1752, 2692 |
| BmuI | ACTGGG | 2 cut(s) | 282, 399 |
| BpiI | GAAGAC | 1 cut(s) | 2441 |
| BpmI | CTGGAG | 1 cut(s) | 1703 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1789, 2144 |
| Bpu14I | TTCGAA | 1 cut(s) | 1109 |
| BpuEI | CTTGAG | 8 cut(s) | 759, 1441, 2065, 2225, 2414, 2574, 2848, 2884 |
| BpuMI | CCSGG | 2 cut(s) | 1726, 2117 |
| BsaI | GGTCTC | 2 cut(s) | 307, 934 |
| BsaJI | CCNNGG | 4 cut(s) | 90, 1847, 2170, 2766 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 13, 658, 1391, 1989, 2392, 2477 |
| Bse118I | RCCGGY | 1 cut(s) | 2547 |
| Bse1I | ACTGG | 4 cut(s) | 77, 277, 394, 1253 |
| Bse3DI | GCAATG | 3 cut(s) | 1647, 2412, 2520 |
| BseBI | CCWGG | 4 cut(s) | 413, 551, 1848, 2544 |
| BseDI | CCNNGG | 4 cut(s) | 90, 1847, 2170, 2766 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 13, 658, 1391, 1989, 2392, 2477 |
| BseMI | GCAATG | 3 cut(s) | 1647, 2412, 2520 |
| BseMII | CTCAG | 3 cut(s) | 645, 2388, 2774 |
| BseNI | ACTGG | 4 cut(s) | 77, 277, 394, 1253 |
| BseRI | GAGGAG | 4 cut(s) | 257, 347, 611, 1937 |
| BseSI | GKGCMC | 2 cut(s) | 1169, 1504 |
| BseXI | GCAGC | 6 cut(s) | 430, 979, 1346, 1368, 2212, 2882 |
| BseYI | CCCAGC | 1 cut(s) | 1417 |
| BsgI | GTGCAG | 1 cut(s) | 2014 |
| BshFI | GGCC | 6 cut(s) | 1316, 1502, 1978, 2547, 2551, 2861 |
| BsiHKAI | GWGCWC | 4 cut(s) | 797, 1161, 1169, 1558 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2596 |
| BsiSI | CCGG | 3 cut(s) | 1725, 2116, 2548 |
| BslFI | GGGAC | 5 cut(s) | 227, 750, 882, 1769, 2354 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 13, 658, 1391, 1989, 2392, 2477 |
| BsmAI | GTCTC | 7 cut(s) | 307, 934, 1649, 1807, 1908, 2067, 2377 |
| BsmBI | CGTCTC | 1 cut(s) | 2067 |
| BsmFI | GGGAC | 5 cut(s) | 227, 750, 882, 1769, 2354 |
| BsmI | GAATGC | 1 cut(s) | 2426 |
| BsnI | GGCC | 6 cut(s) | 1316, 1502, 1978, 2547, 2551, 2861 |
| Bso31I | GGTCTC | 2 cut(s) | 307, 934 |
| BsoBI | CYCGRG | 1 cut(s) | 2596 |
| Bsp119I | TTCGAA | 1 cut(s) | 1109 |
| Bsp120I | GGGCCC | 1 cut(s) | 1500 |
| Bsp1286I | GDGCHC | 7 cut(s) | 797, 897, 1161, 1169, 1358, 1504, 1558 |
| Bsp1407I | TGTACA | 1 cut(s) | 1485 |
| Bsp143I | GATC | 8 cut(s) | 40, 184, 266, 529, 617, 779, 1137, 2485 |
| Bsp19I | CCATGG | 1 cut(s) | 2170 |
| BspACI | CCGC | 1 cut(s) | 734 |
| BspANI | GGCC | 6 cut(s) | 1316, 1502, 1978, 2547, 2551, 2861 |
| BspCNI | CTCAG | 3 cut(s) | 646, 2387, 2773 |
| BspMI | ACCTGC | 5 cut(s) | 163, 361, 880, 1059, 1514 |
| BspPI | GGATC | 6 cut(s) | 35, 48, 274, 625, 787, 2493 |
| BspT104I | TTCGAA | 1 cut(s) | 1109 |
| BspTNI | GGTCTC | 2 cut(s) | 307, 934 |
| BsrDI | GCAATG | 3 cut(s) | 1647, 2412, 2520 |
| BsrFI | RCCGGY | 1 cut(s) | 2547 |
| BsrGI | TGTACA | 1 cut(s) | 1485 |
| BsrI | ACTGG | 4 cut(s) | 77, 277, 394, 1253 |
| BssAI | RCCGGY | 1 cut(s) | 2547 |
| BssECI | CCNNGG | 4 cut(s) | 90, 1847, 2170, 2766 |
| BssMI | GATC | 8 cut(s) | 40, 184, 266, 529, 617, 779, 1137, 2485 |
| BssSI | CACGAG | 1 cut(s) | 1121 |
| BssT1I | CCWWGG | 2 cut(s) | 2170, 2766 |
| Bst2BI | CACGAG | 1 cut(s) | 1121 |
| Bst2UI | CCWGG | 4 cut(s) | 413, 551, 1848, 2544 |
| Bst4CI | ACNGT | 5 cut(s) | 231, 1935, 2237, 2302, 2908 |
| Bst6I | CTCTTC | 5 cut(s) | 852, 932, 2384, 2608, 2699 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2181 |
| BstAUI | TGTACA | 1 cut(s) | 1485 |
| BstBI | TTCGAA | 1 cut(s) | 1109 |
| BstC8I | GCNNGC | 4 cut(s) | 1767, 2087, 2163, 2549 |
| BstDEI | CTNAG | 7 cut(s) | 654, 1789, 2144, 2315, 2374, 2630, 2760 |
| BstDSI | CCRYGG | 1 cut(s) | 2170 |
| BstEII | GGTNACC | 1 cut(s) | 2258 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 11 |
| BstKTI | GATC | 8 cut(s) | 43, 187, 269, 532, 620, 782, 1140, 2488 |
| BstMAI | GTCTC | 7 cut(s) | 307, 934, 1649, 1807, 1908, 2067, 2377 |
| BstMBI | GATC | 8 cut(s) | 40, 184, 266, 529, 617, 779, 1137, 2485 |
| BstNI | CCWGG | 4 cut(s) | 413, 551, 1848, 2544 |
| BstNSI | RCATGY | 5 cut(s) | 562, 835, 2325, 2369, 2676 |
| BstPI | GGTNACC | 1 cut(s) | 2258 |
| BstSCI | CCNGG | 6 cut(s) | 411, 549, 1724, 1846, 2115, 2542 |
| BstSFI | CTRYAG | 2 cut(s) | 1318, 2229 |
| BstSLI | GKGCMC | 2 cut(s) | 1169, 1504 |
| BstV1I | GCAGC | 6 cut(s) | 430, 979, 1346, 1368, 2212, 2882 |
| BstV2I | GAAGAC | 1 cut(s) | 2441 |
| BstX2I | RGATCY | 5 cut(s) | 40, 266, 529, 779, 2485 |
| BstYI | RGATCY | 5 cut(s) | 40, 266, 529, 779, 2485 |
| BsuI | GTATCC | 2 cut(s) | 595, 2643 |
| BsuRI | GGCC | 6 cut(s) | 1316, 1502, 1978, 2547, 2551, 2861 |
| BtgI | CCRYGG | 1 cut(s) | 2170 |
| BtsI | GCAGTG | 1 cut(s) | 2918 |
| BtsIMutI | CAGTG | 2 cut(s) | 2298, 2918 |
| BveI | ACCTGC | 5 cut(s) | 163, 361, 880, 1059, 1514 |
| Cac8I | GCNNGC | 4 cut(s) | 1767, 2087, 2163, 2549 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1806, 1970 |
| Cfr10I | RCCGGY | 1 cut(s) | 2547 |
| Cfr13I | GGNCC | 9 cut(s) | 455, 869, 1500, 1501, 1783, 1864, 1977, 2305, 2398 |
| CseI | GACGC | 2 cut(s) | 107, 2084 |
| Csp6I | GTAC | 9 cut(s) | 152, 227, 232, 387, 771, 1486, 2601, 2618, 2909 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1699, 1734 |
| CviQI | GTAC | 9 cut(s) | 152, 227, 232, 387, 771, 1486, 2601, 2618, 2909 |
| DdeI | CTNAG | 7 cut(s) | 654, 1789, 2144, 2315, 2374, 2630, 2760 |
| DpnI | GATC | 8 cut(s) | 42, 186, 268, 531, 619, 781, 1139, 2487 |
| DpnII | GATC | 8 cut(s) | 40, 184, 266, 529, 617, 779, 1137, 2485 |
| EaeI | YGGCCR | 2 cut(s) | 2545, 2549 |
| Eam1104I | CTCTTC | 5 cut(s) | 852, 932, 2384, 2608, 2699 |
| EarI | CTCTTC | 5 cut(s) | 852, 932, 2384, 2608, 2699 |
| Eco130I | CCWWGG | 2 cut(s) | 2170, 2766 |
| Eco147I | AGGCCT | 1 cut(s) | 2861 |
| Eco24I | GRGCYC | 3 cut(s) | 897, 1358, 1504 |
| Eco31I | GGTCTC | 2 cut(s) | 307, 934 |
| Eco32I | GATATC | 2 cut(s) | 584, 1435 |
| Eco47I | GGWCC | 6 cut(s) | 455, 869, 1783, 1864, 2305, 2398 |
| Eco57I | CTGAAG | 1 cut(s) | 2289 |
| Eco88I | CYCGRG | 1 cut(s) | 2596 |
| Eco91I | GGTNACC | 1 cut(s) | 2258 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 11 |
| EcoO109I | RGGNCCY | 5 cut(s) | 869, 1500, 1501, 1977, 2398 |
| EcoO65I | GGTNACC | 1 cut(s) | 2258 |
| EcoRI | GAATTC | 1 cut(s) | 2352 |
| EcoRII | CCWGG | 4 cut(s) | 411, 549, 1846, 2542 |
| EcoRV | GATATC | 2 cut(s) | 584, 1435 |
| EcoT14I | CCWWGG | 2 cut(s) | 2170, 2766 |
| EcoT22I | ATGCAT | 2 cut(s) | 1951, 2065 |
| EcoT38I | GRGCYC | 3 cut(s) | 897, 1358, 1504 |
| ErhI | CCWWGG | 2 cut(s) | 2170, 2766 |
| Esp3I | CGTCTC | 1 cut(s) | 2067 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1321, 1353 |
| FaqI | GGGAC | 5 cut(s) | 227, 750, 882, 1769, 2354 |
| FauI | CCCGC | 1 cut(s) | 727 |
| FauNDI | CATATG | 5 cut(s) | 49, 189, 1147, 1636, 1818 |
| FbaI | TGATCA | 1 cut(s) | 1137 |
| FblI | GTMKAC | 3 cut(s) | 18, 1035, 1280 |
| Fnu4HI | GCNGC | 6 cut(s) | 444, 993, 1335, 1382, 2226, 2871 |
| FriOI | GRGCYC | 3 cut(s) | 897, 1358, 1504 |
| FseI | GGCCGGCC | 1 cut(s) | 2551 |
| Fsp4HI | GCNGC | 6 cut(s) | 444, 993, 1335, 1382, 2226, 2871 |
| FspBI | CTAG | 5 cut(s) | 447, 1200, 2079, 2609, 2654 |
| GluI | GCNGC | 6 cut(s) | 444, 993, 1335, 1382, 2226, 2871 |
| GsaI | CCCAGC | 1 cut(s) | 1421 |
| GsuI | CTGGAG | 1 cut(s) | 1703 |
| HaeIII | GGCC | 6 cut(s) | 1316, 1502, 1978, 2547, 2551, 2861 |
| HapII | CCGG | 3 cut(s) | 1725, 2116, 2548 |
| HgaI | GACGC | 2 cut(s) | 107, 2084 |
| HincII | GTYRAC | 2 cut(s) | 135, 1414 |
| HindII | GTYRAC | 2 cut(s) | 135, 1414 |
| HindIII | AAGCTT | 1 cut(s) | 2163 |
| HinfI | GANTC | 8 cut(s) | 337, 848, 1231, 1515, 1664, 1803, 2137, 2573 |
| HpaI | GTTAAC | 1 cut(s) | 135 |
| HpaII | CCGG | 3 cut(s) | 1725, 2116, 2548 |
| HphI | GGTGA | 5 cut(s) | 40, 1204, 2131, 2252, 2513 |
| Hpy188I | TCNGA | 6 cut(s) | 91, 622, 853, 886, 1802, 2763 |
| Hpy188III | TCNNGA | 9 cut(s) | 341, 911, 1141, 1200, 1477, 1682, 2349, 2386, 2431 |
| HpyCH4III | ACNGT | 5 cut(s) | 231, 1935, 2237, 2302, 2908 |
| HpyCH4IV | ACGT | 2 cut(s) | 1032, 1408 |
| HpyF3I | CTNAG | 7 cut(s) | 654, 1789, 2144, 2315, 2374, 2630, 2760 |
| HpySE526I | ACGT | 2 cut(s) | 1032, 1408 |
| KroI | GCCGGC | 1 cut(s) | 2547 |
| KroNI | GCCGGC | 1 cut(s) | 2549 |
| Ksp22I | TGATCA | 1 cut(s) | 1137 |
| KspAI | GTTAAC | 1 cut(s) | 135 |
| Kzo9I | GATC | 8 cut(s) | 40, 184, 266, 529, 617, 779, 1137, 2485 |
| LmnI | GCTCC | 8 cut(s) | 193, 492, 792, 892, 1366, 1684, 1721, 2876 |
| Lsp1109I | GCAGC | 6 cut(s) | 430, 979, 1346, 1368, 2212, 2882 |
| LweI | GCATC | 6 cut(s) | 118, 667, 1104, 1597, 1752, 2692 |
| MaeI | CTAG | 5 cut(s) | 447, 1200, 2079, 2609, 2654 |
| MaeII | ACGT | 2 cut(s) | 1032, 1408 |
| MaeIII | GTNAC | 6 cut(s) | 171, 1742, 2024, 2258, 2517, 2710 |
| MalI | GATC | 8 cut(s) | 42, 186, 268, 531, 619, 781, 1139, 2487 |
| MboI | GATC | 8 cut(s) | 40, 184, 266, 529, 617, 779, 1137, 2485 |
| MfeI | CAATTG | 3 cut(s) | 35, 1954, 2641 |
| MflI | RGATCY | 5 cut(s) | 40, 266, 529, 779, 2485 |
| MhlI | GDGCHC | 7 cut(s) | 797, 897, 1161, 1169, 1358, 1504, 1558 |
| MlyI | GAGTC | 1 cut(s) | 2567 |
| MmeI | TCCRAC | 4 cut(s) | 639, 1323, 1329, 1917 |
| Mph1103I | ATGCAT | 2 cut(s) | 1951, 2065 |
| MroNI | GCCGGC | 1 cut(s) | 2547 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1133, 1190, 2632 |
| MspA1I | CMGCKG | 1 cut(s) | 1595 |
| MspI | CCGG | 3 cut(s) | 1725, 2116, 2548 |
| MspR9I | CCNGG | 6 cut(s) | 413, 551, 1726, 1848, 2117, 2544 |
| MunI | CAATTG | 3 cut(s) | 35, 1954, 2641 |
| Mva1269I | GAATGC | 1 cut(s) | 2426 |
| MvaI | CCWGG | 4 cut(s) | 413, 551, 1848, 2544 |
| NaeI | GCCGGC | 1 cut(s) | 2549 |
| NciI | CCSGG | 2 cut(s) | 1726, 2117 |
| NcoI | CCATGG | 1 cut(s) | 2170 |
| NdeI | CATATG | 5 cut(s) | 49, 189, 1147, 1636, 1818 |
| NdeII | GATC | 8 cut(s) | 40, 184, 266, 529, 617, 779, 1137, 2485 |
| NgoMIV | GCCGGC | 1 cut(s) | 2547 |
| NmeAIII | GCCGAG | 1 cut(s) | 2851 |
| NmuCI | GTSAC | 3 cut(s) | 1742, 2024, 2258 |
| NsiI | ATGCAT | 2 cut(s) | 1951, 2065 |
| NspI | RCATGY | 5 cut(s) | 562, 835, 2325, 2369, 2676 |
| NspV | TTCGAA | 1 cut(s) | 1109 |
| OliI | CACNNNNGTG | 2 cut(s) | 1190, 2632 |
| PaqCI | CACCTGC | 1 cut(s) | 361 |
| PceI | AGGCCT | 1 cut(s) | 2861 |
| PciI | ACATGT | 1 cut(s) | 831 |
| PctI | GAATGC | 1 cut(s) | 2426 |
| PdiI | GCCGGC | 1 cut(s) | 2549 |
| PfeI | GAWTC | 7 cut(s) | 337, 848, 1231, 1515, 1664, 1803, 2137 |
| PflFI | GACNNNGTC | 1 cut(s) | 1276 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1391, 1989 |
| PfoI | TCCNGGA | 2 cut(s) | 411, 549 |
| PkrI | GCNGC | 6 cut(s) | 445, 994, 1336, 1383, 2227, 2872 |
| PleI | GAGTC | 1 cut(s) | 2567 |
| PpsI | GAGTC | 1 cut(s) | 2567 |
| PpuMI | RGGWCCY | 2 cut(s) | 869, 2398 |
| PscI | ACATGT | 1 cut(s) | 831 |
| PsiI | TTATAA | 2 cut(s) | 401, 1739 |
| Psp5II | RGGWCCY | 2 cut(s) | 869, 2398 |
| Psp6I | CCWGG | 4 cut(s) | 411, 549, 1846, 2542 |
| PspEI | GGTNACC | 1 cut(s) | 2258 |
| PspFI | CCCAGC | 1 cut(s) | 1417 |
| PspGI | CCWGG | 4 cut(s) | 411, 549, 1846, 2542 |
| PspOMI | GGGCCC | 1 cut(s) | 1500 |
| PspPI | GGNCC | 9 cut(s) | 455, 869, 1500, 1501, 1783, 1864, 1977, 2305, 2398 |
| PspPPI | RGGWCCY | 2 cut(s) | 869, 2398 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1806, 1970 |
| PsuI | RGATCY | 5 cut(s) | 40, 266, 529, 779, 2485 |
| PsyI | GACNNNGTC | 1 cut(s) | 1276 |
| PvuII | CAGCTG | 1 cut(s) | 1595 |
| RigI | GGCCGGCC | 1 cut(s) | 2551 |
| RsaI | GTAC | 9 cut(s) | 153, 228, 233, 388, 772, 1487, 2602, 2619, 2910 |
| RsaNI | GTAC | 9 cut(s) | 152, 227, 232, 387, 771, 1486, 2601, 2618, 2909 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1133, 1190, 2632 |
| SatI | GCNGC | 6 cut(s) | 444, 993, 1335, 1382, 2226, 2871 |
| Sau3AI | GATC | 8 cut(s) | 40, 184, 266, 529, 617, 779, 1137, 2485 |
| Sau96I | GGNCC | 9 cut(s) | 455, 869, 1500, 1501, 1783, 1864, 1977, 2305, 2398 |
| ScaI | AGTACT | 2 cut(s) | 388, 772 |
| SchI | GAGTC | 1 cut(s) | 2567 |
| ScrFI | CCNGG | 6 cut(s) | 413, 551, 1726, 1848, 2117, 2544 |
| SduI | GDGCHC | 7 cut(s) | 797, 897, 1161, 1169, 1358, 1504, 1558 |
| SfaNI | GCATC | 6 cut(s) | 118, 667, 1104, 1597, 1752, 2692 |
| SfcI | CTRYAG | 2 cut(s) | 1318, 2229 |
| SfuI | TTCGAA | 1 cut(s) | 1109 |
| SinI | GGWCC | 6 cut(s) | 455, 869, 1783, 1864, 2305, 2398 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1133, 1190, 2632 |
| SmlI | CTYRAG | 8 cut(s) | 774, 1456, 2044, 2204, 2429, 2589, 2863, 2899 |
| SmoI | CTYRAG | 8 cut(s) | 774, 1456, 2044, 2204, 2429, 2589, 2863, 2899 |
| SseBI | AGGCCT | 1 cut(s) | 2861 |
| SsiI | CCGC | 1 cut(s) | 734 |
| SspMI | CTAG | 5 cut(s) | 447, 1200, 2079, 2609, 2654 |
| StuI | AGGCCT | 1 cut(s) | 2861 |
| StyD4I | CCNGG | 6 cut(s) | 411, 549, 1724, 1846, 2115, 2542 |
| StyI | CCWWGG | 2 cut(s) | 2170, 2766 |
| TaaI | ACNGT | 5 cut(s) | 231, 1935, 2237, 2302, 2908 |
| TaiI | ACGT | 2 cut(s) | 1035, 1411 |
| TaqI | TCGA | 2 cut(s) | 1109, 2332 |
| TatI | WGTACW | 5 cut(s) | 226, 386, 770, 1485, 2617 |
| TfiI | GAWTC | 7 cut(s) | 337, 848, 1231, 1515, 1664, 1803, 2137 |
| TscAI | CASTG | 2 cut(s) | 2305, 2925 |
| TseFI | GTSAC | 3 cut(s) | 1742, 2024, 2258 |
| TseI | GCWGC | 6 cut(s) | 443, 992, 1334, 1381, 2225, 2870 |
| Tsp45I | GTSAC | 3 cut(s) | 1742, 2024, 2258 |
| TspRI | CASTG | 2 cut(s) | 2305, 2925 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1276 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1391, 1989 |
| VneI | GTGCAC | 1 cut(s) | 1165 |
| VpaK11BI | GGWCC | 6 cut(s) | 455, 869, 1783, 1864, 2305, 2398 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 11 |
| XapI | RAATTY | 5 cut(s) | 905, 914, 965, 1217, 2352 |
| XbaI | TCTAGA | 1 cut(s) | 1199 |
| XceI | RCATGY | 5 cut(s) | 562, 835, 2325, 2369, 2676 |
| XmiI | GTMKAC | 3 cut(s) | 18, 1035, 1280 |
| XspI | CTAG | 5 cut(s) | 447, 1200, 2079, 2609, 2654 |
| ZrmI | AGTACT | 2 cut(s) | 388, 772 |
| Zsp2I | ATGCAT | 2 cut(s) | 1951, 2065 |