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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 124 |
| Acc36I | ACCTGC | 1 cut(s) | 124 |
| AccB1I | GGYRCC | 1 cut(s) | 133 |
| AclWI | GGATC | 1 cut(s) | 528 |
| AcuI | CTGAAG | 1 cut(s) | 357 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 223, 407 |
| AgsI | TTSAA | 4 cut(s) | 93, 184, 438, 459 |
| AjnI | CCWGG | 1 cut(s) | 196 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 418, 450 |
| AluBI | AGCT | 6 cut(s) | 190, 317, 335, 431, 455, 489 |
| AluI | AGCT | 6 cut(s) | 190, 317, 335, 431, 455, 489 |
| AlwI | GGATC | 1 cut(s) | 528 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 156, 479 |
| ApeKI | GCWGC | 3 cut(s) | 383, 431, 452 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 13 |
| AspS9I | GGNCC | 1 cut(s) | 214 |
| AsuHPI | GGTGA | 3 cut(s) | 73, 77, 217 |
| AvaII | GGWCC | 1 cut(s) | 214 |
| AxyI | CCTNAGG | 1 cut(s) | 32 |
| BanI | GGYRCC | 1 cut(s) | 133 |
| BanII | GRGCYC | 1 cut(s) | 291 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 439, 471 |
| BbsI | GAAGAC | 1 cut(s) | 424 |
| BbvI | GCAGC | 3 cut(s) | 395, 418, 464 |
| BccI | CCATC | 1 cut(s) | 262 |
| BciT130I | CCWGG | 1 cut(s) | 198 |
| BciVI | GTATCC | 1 cut(s) | 271 |
| BfaI | CTAG | 1 cut(s) | 140 |
| BfuAI | ACCTGC | 1 cut(s) | 124 |
| BfuI | GTATCC | 1 cut(s) | 271 |
| BisI | GCNGC | 3 cut(s) | 384, 432, 453 |
| BlsI | GCNGC | 3 cut(s) | 385, 433, 454 |
| Bme1390I | CCNGG | 1 cut(s) | 198 |
| Bme18I | GGWCC | 1 cut(s) | 214 |
| BmgT120I | GGNCC | 1 cut(s) | 214 |
| BmiI | GGNNCC | 2 cut(s) | 29, 135 |
| BmrFI | CCNGG | 1 cut(s) | 198 |
| BpiI | GAAGAC | 1 cut(s) | 424 |
| Bpu10I | CCTNAGC | 1 cut(s) | 318 |
| BsaJI | CCNNGG | 1 cut(s) | 494 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 223, 407 |
| Bse1I | ACTGG | 2 cut(s) | 29, 217 |
| Bse21I | CCTNAGG | 1 cut(s) | 32 |
| BseBI | CCWGG | 1 cut(s) | 198 |
| BseDI | CCNNGG | 1 cut(s) | 494 |
| BseGI | GGATG | 1 cut(s) | 364 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 223, 407 |
| BseMII | CTCAG | 1 cut(s) | 23 |
| BseNI | ACTGG | 2 cut(s) | 29, 217 |
| BseXI | GCAGC | 3 cut(s) | 395, 418, 464 |
| BsgI | GTGCAG | 1 cut(s) | 465 |
| BshNI | GGYRCC | 1 cut(s) | 133 |
| BslFI | GGGAC | 1 cut(s) | 35 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 223, 407 |
| BsmFI | GGGAC | 1 cut(s) | 35 |
| Bsp1286I | GDGCHC | 1 cut(s) | 291 |
| Bsp143I | GATC | 3 cut(s) | 57, 145, 520 |
| BspCNI | CTCAG | 1 cut(s) | 24 |
| BspLI | GGNNCC | 2 cut(s) | 29, 135 |
| BspMI | ACCTGC | 1 cut(s) | 124 |
| BspPI | GGATC | 1 cut(s) | 528 |
| BspT107I | GGYRCC | 1 cut(s) | 133 |
| BsrI | ACTGG | 2 cut(s) | 29, 217 |
| BssECI | CCNNGG | 1 cut(s) | 494 |
| BssMI | GATC | 3 cut(s) | 57, 145, 520 |
| BssT1I | CCWWGG | 1 cut(s) | 494 |
| Bst2UI | CCWGG | 1 cut(s) | 198 |
| Bst6I | CTCTTC | 1 cut(s) | 406 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 479 |
| BstDEI | CTNAG | 3 cut(s) | 32, 311, 318 |
| BstF5I | GGATG | 1 cut(s) | 364 |
| BstKTI | GATC | 3 cut(s) | 60, 148, 523 |
| BstMBI | GATC | 3 cut(s) | 57, 145, 520 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 323, 332, 383, 479 |
| BstNI | CCWGG | 1 cut(s) | 198 |
| BstNSI | RCATGY | 2 cut(s) | 123, 398 |
| BstSCI | CCNGG | 1 cut(s) | 196 |
| BstV1I | GCAGC | 3 cut(s) | 395, 418, 464 |
| BstV2I | GAAGAC | 1 cut(s) | 424 |
| Bsu36I | CCTNAGG | 1 cut(s) | 32 |
| BsuI | GTATCC | 1 cut(s) | 271 |
| BtsCI | GGATG | 1 cut(s) | 364 |
| BveI | ACCTGC | 1 cut(s) | 124 |
| CaiI | CAGNNNCTG | 2 cut(s) | 156, 479 |
| Cfr13I | GGNCC | 1 cut(s) | 214 |
| CviAII | CATG | 4 cut(s) | 18, 120, 235, 395 |
| CviJI | RGCY | 9 cut(s) | 37, 109, 190, 289, 317, 335, 431, 455, 489 |
| CviKI_1 | RGCY | 9 cut(s) | 37, 109, 190, 289, 317, 335, 431, 455, 489 |
| DdeI | CTNAG | 3 cut(s) | 32, 311, 318 |
| DpnI | GATC | 3 cut(s) | 59, 147, 522 |
| DpnII | GATC | 3 cut(s) | 57, 145, 520 |
| Eam1104I | CTCTTC | 1 cut(s) | 406 |
| EarI | CTCTTC | 1 cut(s) | 406 |
| Eco130I | CCWWGG | 1 cut(s) | 494 |
| Eco24I | GRGCYC | 1 cut(s) | 291 |
| Eco47I | GGWCC | 1 cut(s) | 214 |
| Eco57I | CTGAAG | 1 cut(s) | 357 |
| Eco81I | CCTNAGG | 1 cut(s) | 32 |
| EcoRII | CCWGG | 1 cut(s) | 196 |
| EcoT14I | CCWWGG | 1 cut(s) | 494 |
| EcoT38I | GRGCYC | 1 cut(s) | 291 |
| ErhI | CCWWGG | 1 cut(s) | 494 |
| FaeI | CATG | 4 cut(s) | 21, 123, 238, 398 |
| FaiI | YATR | 5 cut(s) | 19, 62, 121, 236, 396 |
| FaqI | GGGAC | 1 cut(s) | 35 |
| FatI | CATG | 4 cut(s) | 17, 119, 234, 394 |
| Fnu4HI | GCNGC | 3 cut(s) | 384, 432, 453 |
| FokI | GGATG | 1 cut(s) | 371 |
| FriOI | GRGCYC | 1 cut(s) | 291 |
| Fsp4HI | GCNGC | 3 cut(s) | 384, 432, 453 |
| FspBI | CTAG | 1 cut(s) | 140 |
| GluI | GCNGC | 3 cut(s) | 384, 432, 453 |
| Hin1II | CATG | 4 cut(s) | 21, 123, 238, 398 |
| HindIII | AAGCTT | 1 cut(s) | 487 |
| HinfI | GANTC | 1 cut(s) | 14 |
| HphI | GGTGA | 3 cut(s) | 73, 77, 217 |
| Hpy166II | GTNNAC | 2 cut(s) | 174, 240 |
| Hpy188I | TCNGA | 1 cut(s) | 525 |
| Hpy188III | TCNNGA | 1 cut(s) | 31 |
| Hpy8I | GTNNAC | 2 cut(s) | 174, 240 |
| HpyAV | CCTTC | 1 cut(s) | 94 |
| HpyCH4V | TGCA | 2 cut(s) | 119, 482 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 323, 332, 383, 479 |
| HpyF3I | CTNAG | 3 cut(s) | 32, 311, 318 |
| Hsp92II | CATG | 4 cut(s) | 21, 123, 238, 398 |
| Kzo9I | GATC | 3 cut(s) | 57, 145, 520 |
| LmnI | GCTCC | 1 cut(s) | 403 |
| LpnPI | CCDG | 7 cut(s) | 10, 44, 129, 136, 183, 210, 230 |
| Lsp1109I | GCAGC | 3 cut(s) | 395, 418, 464 |
| MaeI | CTAG | 1 cut(s) | 140 |
| MalI | GATC | 3 cut(s) | 59, 147, 522 |
| MboI | GATC | 3 cut(s) | 57, 145, 520 |
| MboII | GAAGA | 4 cut(s) | 80, 137, 423, 429 |
| MhlI | GDGCHC | 1 cut(s) | 291 |
| MluCI | AATT | 1 cut(s) | 178 |
| MnlI | CCTC | 7 cut(s) | 27, 348, 360, 383, 401, 407, 511 |
| MroXI | GAANNNNTTC | 1 cut(s) | 13 |
| MseI | TTAA | 2 cut(s) | 45, 293 |
| MslI | CAYNNNNRTG | 1 cut(s) | 118 |
| MspR9I | CCNGG | 1 cut(s) | 198 |
| MvaI | CCWGG | 1 cut(s) | 198 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 323, 332, 383, 479 |
| NdeII | GATC | 3 cut(s) | 57, 145, 520 |
| NlaIII | CATG | 4 cut(s) | 21, 123, 238, 398 |
| NlaIV | GGNNCC | 2 cut(s) | 29, 135 |
| NspI | RCATGY | 2 cut(s) | 123, 398 |
| PaqCI | CACCTGC | 1 cut(s) | 124 |
| PdmI | GAANNNNTTC | 1 cut(s) | 13 |
| PfeI | GAWTC | 1 cut(s) | 14 |
| PkrI | GCNGC | 3 cut(s) | 385, 433, 454 |
| Psp6I | CCWGG | 1 cut(s) | 196 |
| PspGI | CCWGG | 1 cut(s) | 196 |
| PspN4I | GGNNCC | 2 cut(s) | 29, 135 |
| PspPI | GGNCC | 1 cut(s) | 214 |
| PstNI | CAGNNNCTG | 2 cut(s) | 156, 479 |
| RseI | CAYNNNNRTG | 1 cut(s) | 118 |
| SaqAI | TTAA | 2 cut(s) | 45, 293 |
| SatI | GCNGC | 3 cut(s) | 384, 432, 453 |
| Sau3AI | GATC | 3 cut(s) | 57, 145, 520 |
| Sau96I | GGNCC | 1 cut(s) | 214 |
| ScrFI | CCNGG | 1 cut(s) | 198 |
| SduI | GDGCHC | 1 cut(s) | 291 |
| SinI | GGWCC | 1 cut(s) | 214 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 118 |
| Sse9I | AATT | 1 cut(s) | 178 |
| SspMI | CTAG | 1 cut(s) | 140 |
| StyD4I | CCNGG | 1 cut(s) | 196 |
| StyI | CCWWGG | 1 cut(s) | 494 |
| TasI | AATT | 1 cut(s) | 178 |
| TfiI | GAWTC | 1 cut(s) | 14 |
| Tru1I | TTAA | 2 cut(s) | 45, 293 |
| Tru9I | TTAA | 2 cut(s) | 45, 293 |
| TseI | GCWGC | 3 cut(s) | 383, 431, 452 |
| TspDTI | ATGAA | 5 cut(s) | 6, 76, 321, 375, 490 |
| VpaK11BI | GGWCC | 1 cut(s) | 214 |
| XceI | RCATGY | 2 cut(s) | 123, 398 |
| XmnI | GAANNNNTTC | 1 cut(s) | 13 |
| XspI | CTAG | 1 cut(s) | 140 |