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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1348 |
| AciI | CCGC | 1 cut(s) | 2099 |
| AclI | AACGTT | 1 cut(s) | 2622 |
| AclWI | GGATC | 7 cut(s) | 215, 937, 983, 1253, 1857, 1870, 2193 |
| AcoI | YGGCCR | 3 cut(s) | 498, 582, 2221 |
| AcsI | RAATTY | 2 cut(s) | 227, 488 |
| AcuI | CTGAAG | 2 cut(s) | 962, 2136 |
| AcyI | GRCGYC | 1 cut(s) | 1521 |
| AfaI | GTAC | 3 cut(s) | 703, 1061, 2176 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1516, 1530, 1767 |
| AflII | CTTAAG | 1 cut(s) | 571 |
| AflIII | ACRYGT | 4 cut(s) | 405, 1617, 1895, 2246 |
| AjnI | CCWGG | 4 cut(s) | 361, 991, 1420, 2116 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 593, 625 |
| Alw21I | GWGCWC | 2 cut(s) | 1132, 2539 |
| AlwI | GGATC | 7 cut(s) | 215, 937, 983, 1253, 1857, 1870, 2193 |
| ApoI | RAATTY | 2 cut(s) | 227, 488 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 836, 868 |
| AseI | ATTAAT | 1 cut(s) | 453 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1088 |
| AspS9I | GGNCC | 8 cut(s) | 11, 32, 46, 359, 799, 1398, 1879, 2363 |
| AsuC2I | CCSGG | 1 cut(s) | 1976 |
| AsuHPI | GGTGA | 5 cut(s) | 299, 1279, 2024, 2320, 2327 |
| AsuII | TTCGAA | 2 cut(s) | 683, 2185 |
| AvaII | GGWCC | 4 cut(s) | 11, 799, 1398, 2363 |
| BalI | TGGCCA | 2 cut(s) | 584, 2223 |
| BamHI | GGATCC | 1 cut(s) | 1862 |
| BanII | GRGCYC | 1 cut(s) | 2593 |
| BbsI | GAAGAC | 2 cut(s) | 514, 2015 |
| Bbv12I | GWGCWC | 2 cut(s) | 1132, 2539 |
| BceAI | ACGGC | 3 cut(s) | 1928, 2531, 2567 |
| BciT130I | CCWGG | 4 cut(s) | 363, 993, 1422, 2118 |
| BclI | TGATCA | 1 cut(s) | 711 |
| BcnI | CCSGG | 1 cut(s) | 1976 |
| BfaI | CTAG | 4 cut(s) | 839, 1511, 1569, 2397 |
| BfmI | CTRYAG | 1 cut(s) | 1170 |
| BfrI | CTTAAG | 1 cut(s) | 571 |
| BfuAI | ACCTGC | 1 cut(s) | 1348 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2122 |
| Bme1390I | CCNGG | 5 cut(s) | 363, 993, 1422, 1976, 2118 |
| Bme18I | GGWCC | 4 cut(s) | 11, 799, 1398, 2363 |
| BmgT120I | GGNCC | 8 cut(s) | 11, 32, 46, 359, 799, 1398, 1879, 2363 |
| BmiI | GGNNCC | 3 cut(s) | 1864, 2365, 2592 |
| BmrFI | CCNGG | 5 cut(s) | 363, 993, 1422, 1976, 2118 |
| BmsI | GCATC | 7 cut(s) | 84, 556, 678, 1171, 2000, 2137, 2447 |
| BpiI | GAAGAC | 2 cut(s) | 514, 2015 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2484 |
| Bpu14I | TTCGAA | 2 cut(s) | 683, 2185 |
| BpuEI | CTTGAG | 2 cut(s) | 1907, 2224 |
| BpuMI | CCSGG | 1 cut(s) | 1976 |
| BsaHI | GRCGYC | 1 cut(s) | 1521 |
| BsaJI | CCNNGG | 5 cut(s) | 49, 992, 1744, 1766, 2117 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 593, 623, 2521, 2551 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1516, 1530, 1767 |
| Bse1I | ACTGG | 3 cut(s) | 278, 1591, 1927 |
| Bse3DI | GCAATG | 2 cut(s) | 1221, 1812 |
| BseBI | CCWGG | 4 cut(s) | 363, 993, 1422, 2118 |
| BseDI | CCNNGG | 5 cut(s) | 49, 992, 1744, 1766, 2117 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1516, 1530, 1767 |
| BseMI | GCAATG | 2 cut(s) | 1221, 1812 |
| BseMII | CTCAG | 2 cut(s) | 2660, 2679 |
| BseNI | ACTGG | 3 cut(s) | 278, 1591, 1927 |
| BseRI | GAGGAG | 1 cut(s) | 1545 |
| BseYI | CCCAGC | 2 cut(s) | 1097, 1360 |
| BsgI | GTGCAG | 1 cut(s) | 2541 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1132, 2539 |
| BsiSI | CCGG | 2 cut(s) | 497, 1976 |
| BslFI | GGGAC | 5 cut(s) | 227, 1009, 1343, 1492, 2349 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1516, 1530, 1767 |
| BsmFI | GGGAC | 5 cut(s) | 227, 1009, 1343, 1492, 2349 |
| BsmI | GAATGC | 1 cut(s) | 1076 |
| Bsp119I | TTCGAA | 2 cut(s) | 683, 2185 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1132, 2539, 2593 |
| Bsp1407I | TGTACA | 1 cut(s) | 1059 |
| Bsp19I | CCATGG | 1 cut(s) | 1744 |
| BspACI | CCGC | 1 cut(s) | 2099 |
| BspCNI | CTCAG | 2 cut(s) | 2659, 2678 |
| BspLI | GGNNCC | 3 cut(s) | 1864, 2365, 2592 |
| BspMI | ACCTGC | 1 cut(s) | 1348 |
| BspPI | GGATC | 7 cut(s) | 215, 937, 983, 1253, 1857, 1870, 2193 |
| BspT104I | TTCGAA | 2 cut(s) | 683, 2185 |
| BspTI | CTTAAG | 1 cut(s) | 571 |
| BsrDI | GCAATG | 2 cut(s) | 1221, 1812 |
| BsrGI | TGTACA | 1 cut(s) | 1059 |
| BsrI | ACTGG | 3 cut(s) | 278, 1591, 1927 |
| BssECI | CCNNGG | 5 cut(s) | 49, 992, 1744, 1766, 2117 |
| BssNI | GRCGYC | 1 cut(s) | 1521 |
| BssT1I | CCWWGG | 3 cut(s) | 49, 1744, 1766 |
| Bst2UI | CCWGG | 4 cut(s) | 363, 993, 1422, 2118 |
| Bst4CI | ACNGT | 2 cut(s) | 347, 2219 |
| Bst6I | CTCTTC | 5 cut(s) | 303, 1677, 1700, 2182, 2294 |
| BstACI | GRCGYC | 1 cut(s) | 1521 |
| BstAFI | CTTAAG | 1 cut(s) | 571 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2534 |
| BstAUI | TGTACA | 1 cut(s) | 1059 |
| BstBI | TTCGAA | 2 cut(s) | 683, 2185 |
| BstC8I | GCNNGC | 7 cut(s) | 1300, 1661, 1883, 1941, 2463, 2490, 2556 |
| BstDEI | CTNAG | 7 cut(s) | 560, 2133, 2295, 2484, 2646, 2654, 2665 |
| BstDSI | CCRYGG | 1 cut(s) | 1744 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1514 |
| BstNI | CCWGG | 4 cut(s) | 363, 993, 1422, 2118 |
| BstNSI | RCATGY | 6 cut(s) | 409, 1621, 1899, 1943, 2250, 2461 |
| BstSCI | CCNGG | 5 cut(s) | 361, 991, 1420, 1974, 2116 |
| BstSFI | CTRYAG | 1 cut(s) | 1170 |
| BstV2I | GAAGAC | 2 cut(s) | 514, 2015 |
| BstX2I | RGATCY | 3 cut(s) | 1245, 1862, 2198 |
| BstYI | RGATCY | 3 cut(s) | 1245, 1862, 2198 |
| BtgI | CCRYGG | 1 cut(s) | 1744 |
| BtsI | GCAGTG | 2 cut(s) | 46, 190 |
| BtsIMutI | CAGTG | 3 cut(s) | 46, 190, 704 |
| BveI | ACCTGC | 1 cut(s) | 1348 |
| Cac8I | GCNNGC | 7 cut(s) | 1300, 1661, 1883, 1941, 2463, 2490, 2556 |
| Cfr13I | GGNCC | 8 cut(s) | 11, 32, 46, 359, 799, 1398, 1879, 2363 |
| CseI | GACGC | 1 cut(s) | 1529 |
| Csp6I | GTAC | 3 cut(s) | 702, 1060, 2175 |
| CspCI | CAANNNNNGTGG | 3 cut(s) | 24, 38, 59 |
| CviQI | GTAC | 3 cut(s) | 702, 1060, 2175 |
| DdeI | CTNAG | 7 cut(s) | 560, 2133, 2295, 2484, 2646, 2654, 2665 |
| EaeI | YGGCCR | 3 cut(s) | 498, 582, 2221 |
| Eam1104I | CTCTTC | 5 cut(s) | 303, 1677, 1700, 2182, 2294 |
| EarI | CTCTTC | 5 cut(s) | 303, 1677, 1700, 2182, 2294 |
| Eco130I | CCWWGG | 3 cut(s) | 49, 1744, 1766 |
| Eco147I | AGGCCT | 3 cut(s) | 1552, 1739, 2482 |
| Eco24I | GRGCYC | 1 cut(s) | 2593 |
| Eco32I | GATATC | 1 cut(s) | 1009 |
| Eco47I | GGWCC | 4 cut(s) | 11, 799, 1398, 2363 |
| Eco57I | CTGAAG | 2 cut(s) | 962, 2136 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1514 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2363 |
| EcoRI | GAATTC | 1 cut(s) | 227 |
| EcoRII | CCWGG | 4 cut(s) | 361, 991, 1420, 2116 |
| EcoRV | GATATC | 1 cut(s) | 1009 |
| EcoT14I | CCWWGG | 3 cut(s) | 49, 1744, 1766 |
| EcoT22I | ATGCAT | 1 cut(s) | 99 |
| EcoT38I | GRGCYC | 1 cut(s) | 2593 |
| ErhI | CCWWGG | 3 cut(s) | 49, 1744, 1766 |
| FaqI | GGGAC | 5 cut(s) | 227, 1009, 1343, 1492, 2349 |
| FbaI | TGATCA | 1 cut(s) | 711 |
| FriOI | GRGCYC | 1 cut(s) | 2593 |
| FspBI | CTAG | 4 cut(s) | 839, 1511, 1569, 2397 |
| GsaI | CCCAGC | 2 cut(s) | 1101, 1364 |
| HapII | CCGG | 2 cut(s) | 497, 1976 |
| HgaI | GACGC | 1 cut(s) | 1529 |
| Hin1I | GRCGYC | 1 cut(s) | 1521 |
| HincII | GTYRAC | 2 cut(s) | 1157, 2070 |
| HindII | GTYRAC | 2 cut(s) | 1157, 2070 |
| HindIII | AAGCTT | 1 cut(s) | 1627 |
| HinfI | GANTC | 5 cut(s) | 833, 1238, 1649, 1711, 1926 |
| HpaII | CCGG | 2 cut(s) | 497, 1976 |
| HphI | GGTGA | 5 cut(s) | 299, 1279, 2024, 2320, 2327 |
| Hpy166II | GTNNAC | 4 cut(s) | 704, 1157, 1398, 2070 |
| Hpy8I | GTNNAC | 4 cut(s) | 704, 1157, 1398, 2070 |
| HpyAV | CCTTC | 9 cut(s) | 278, 328, 920, 1264, 1286, 1716, 2272, 2299, 2428 |
| HpyCH4III | ACNGT | 2 cut(s) | 347, 2219 |
| HpyCH4IV | ACGT | 1 cut(s) | 2622 |
| HpyF3I | CTNAG | 7 cut(s) | 560, 2133, 2295, 2484, 2646, 2654, 2665 |
| HpySE526I | ACGT | 1 cut(s) | 2622 |
| Hsp92I | GRCGYC | 1 cut(s) | 1521 |
| Ksp22I | TGATCA | 1 cut(s) | 711 |
| LmnI | GCTCC | 5 cut(s) | 67, 1127, 1295, 2542, 2596 |
| LweI | GCATC | 7 cut(s) | 84, 556, 678, 1171, 2000, 2137, 2447 |
| MaeI | CTAG | 4 cut(s) | 839, 1511, 1569, 2397 |
| MaeII | ACGT | 1 cut(s) | 2622 |
| MaeIII | GTNAC | 5 cut(s) | 874, 1589, 1598, 1832, 2249 |
| MflI | RGATCY | 3 cut(s) | 1245, 1862, 2198 |
| MhlI | GDGCHC | 3 cut(s) | 1132, 2539, 2593 |
| MlsI | TGGCCA | 2 cut(s) | 584, 2223 |
| MluCI | AATT | 9 cut(s) | 227, 377, 454, 467, 483, 488, 1371, 1528, 2581 |
| MluNI | TGGCCA | 2 cut(s) | 584, 2223 |
| MlyI | GAGTC | 1 cut(s) | 1658 |
| MmeI | TCCRAC | 3 cut(s) | 1101, 2528, 2564 |
| Mox20I | TGGCCA | 2 cut(s) | 584, 2223 |
| Mph1103I | ATGCAT | 1 cut(s) | 99 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1088 |
| MscI | TGGCCA | 2 cut(s) | 584, 2223 |
| MslI | CAYNNNNRTG | 2 cut(s) | 506, 2060 |
| Msp20I | TGGCCA | 2 cut(s) | 584, 2223 |
| MspA1I | CMGCKG | 2 cut(s) | 167, 1364 |
| MspCI | CTTAAG | 1 cut(s) | 571 |
| MspI | CCGG | 2 cut(s) | 497, 1976 |
| MspR9I | CCNGG | 5 cut(s) | 363, 993, 1422, 1976, 2118 |
| Mva1269I | GAATGC | 1 cut(s) | 1076 |
| MvaI | CCWGG | 4 cut(s) | 363, 993, 1422, 2118 |
| NciI | CCSGG | 1 cut(s) | 1976 |
| NcoI | CCATGG | 1 cut(s) | 1744 |
| NlaIV | GGNNCC | 3 cut(s) | 1864, 2365, 2592 |
| NmuCI | GTSAC | 2 cut(s) | 1598, 1832 |
| NsiI | ATGCAT | 1 cut(s) | 99 |
| NspI | RCATGY | 6 cut(s) | 409, 1621, 1899, 1943, 2250, 2461 |
| NspV | TTCGAA | 2 cut(s) | 683, 2185 |
| PaeI | GCATGC | 1 cut(s) | 1943 |
| PceI | AGGCCT | 3 cut(s) | 1552, 1739, 2482 |
| PciI | ACATGT | 4 cut(s) | 405, 1617, 1895, 2246 |
| PctI | GAATGC | 1 cut(s) | 1076 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1088 |
| PfeI | GAWTC | 4 cut(s) | 833, 1238, 1711, 1926 |
| PflFI | GACNNNGTC | 2 cut(s) | 850, 1985 |
| PleI | GAGTC | 1 cut(s) | 1657 |
| PpsI | GAGTC | 1 cut(s) | 1657 |
| PpuMI | RGGWCCY | 1 cut(s) | 2363 |
| PscI | ACATGT | 4 cut(s) | 405, 1617, 1895, 2246 |
| PshBI | ATTAAT | 1 cut(s) | 453 |
| Psp1406I | AACGTT | 1 cut(s) | 2622 |
| Psp5II | RGGWCCY | 1 cut(s) | 2363 |
| Psp6I | CCWGG | 4 cut(s) | 361, 991, 1420, 2116 |
| PspFI | CCCAGC | 2 cut(s) | 1097, 1360 |
| PspGI | CCWGG | 4 cut(s) | 361, 991, 1420, 2116 |
| PspN4I | GGNNCC | 3 cut(s) | 1864, 2365, 2592 |
| PspPI | GGNCC | 8 cut(s) | 11, 32, 46, 359, 799, 1398, 1879, 2363 |
| PspPPI | RGGWCCY | 1 cut(s) | 2363 |
| PsuI | RGATCY | 3 cut(s) | 1245, 1862, 2198 |
| PsyI | GACNNNGTC | 2 cut(s) | 850, 1985 |
| PvuII | CAGCTG | 2 cut(s) | 167, 1364 |
| RsaI | GTAC | 3 cut(s) | 703, 1061, 2176 |
| RsaNI | GTAC | 3 cut(s) | 702, 1060, 2175 |
| RseI | CAYNNNNRTG | 2 cut(s) | 506, 2060 |
| Sau96I | GGNCC | 8 cut(s) | 11, 32, 46, 359, 799, 1398, 1879, 2363 |
| SchI | GAGTC | 1 cut(s) | 1658 |
| ScrFI | CCNGG | 5 cut(s) | 363, 993, 1422, 1976, 2118 |
| SduI | GDGCHC | 3 cut(s) | 1132, 2539, 2593 |
| SfaNI | GCATC | 7 cut(s) | 84, 556, 678, 1171, 2000, 2137, 2447 |
| SfcI | CTRYAG | 1 cut(s) | 1170 |
| SfuI | TTCGAA | 2 cut(s) | 683, 2185 |
| SinI | GGWCC | 4 cut(s) | 11, 799, 1398, 2363 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 506, 2060 |
| SmlI | CTYRAG | 3 cut(s) | 571, 1886, 2203 |
| SmoI | CTYRAG | 3 cut(s) | 571, 1886, 2203 |
| SphI | GCATGC | 1 cut(s) | 1943 |
| Sse9I | AATT | 9 cut(s) | 227, 377, 454, 467, 483, 488, 1371, 1528, 2581 |
| SseBI | AGGCCT | 3 cut(s) | 1552, 1739, 2482 |
| SsiI | CCGC | 1 cut(s) | 2099 |
| SspI | AATATT | 4 cut(s) | 422, 1774, 1855, 2105 |
| SspMI | CTAG | 4 cut(s) | 839, 1511, 1569, 2397 |
| StuI | AGGCCT | 3 cut(s) | 1552, 1739, 2482 |
| StyD4I | CCNGG | 5 cut(s) | 361, 991, 1420, 1974, 2116 |
| StyI | CCWWGG | 3 cut(s) | 49, 1744, 1766 |
| TaaI | ACNGT | 2 cut(s) | 347, 2219 |
| TaiI | ACGT | 1 cut(s) | 2625 |
| TaqI | TCGA | 4 cut(s) | 56, 231, 683, 2185 |
| TaqII | GACCGA | 1 cut(s) | 870 |
| TasI | AATT | 9 cut(s) | 227, 377, 454, 467, 483, 488, 1371, 1528, 2581 |
| TatI | WGTACW | 2 cut(s) | 701, 1059 |
| TfiI | GAWTC | 4 cut(s) | 833, 1238, 1711, 1926 |
| TscAI | CASTG | 3 cut(s) | 46, 190, 711 |
| TseFI | GTSAC | 2 cut(s) | 1598, 1832 |
| Tsp45I | GTSAC | 2 cut(s) | 1598, 1832 |
| TspRI | CASTG | 3 cut(s) | 46, 190, 711 |
| Tth111I | GACNNNGTC | 2 cut(s) | 850, 1985 |
| Vha464I | CTTAAG | 1 cut(s) | 571 |
| VpaK11BI | GGWCC | 4 cut(s) | 11, 799, 1398, 2363 |
| VspI | ATTAAT | 1 cut(s) | 453 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1514 |
| XapI | RAATTY | 2 cut(s) | 227, 488 |
| XbaI | TCTAGA | 1 cut(s) | 1568 |
| XceI | RCATGY | 6 cut(s) | 409, 1621, 1899, 1943, 2250, 2461 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 56, 1873 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1088 |
| XspI | CTAG | 4 cut(s) | 839, 1511, 1569, 2397 |
| Zsp2I | ATGCAT | 1 cut(s) | 99 |