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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 30 |
| AccI | GTMKAC | 2 cut(s) | 97, 679 |
| AclWI | GGATC | 2 cut(s) | 518, 770 |
| AcoI | YGGCCR | 2 cut(s) | 21, 740 |
| AcuI | CTGAAG | 2 cut(s) | 540, 948 |
| AfaI | GTAC | 1 cut(s) | 374 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 30, 353, 606 |
| AgsI | TTSAA | 8 cut(s) | 88, 123, 211, 512, 606, 644, 711, 901 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 513, 545 |
| AluBI | AGCT | 1 cut(s) | 518 |
| AluI | AGCT | 1 cut(s) | 518 |
| AlwI | GGATC | 2 cut(s) | 518, 770 |
| AoxI | GGCC | 6 cut(s) | 21, 109, 245, 553, 577, 740 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 280, 312 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 507 |
| AspS9I | GGNCC | 4 cut(s) | 245, 334, 554, 578 |
| AsuC2I | CCSGG | 1 cut(s) | 739 |
| AsuHPI | GGTGA | 4 cut(s) | 65, 86, 629, 737 |
| AvaII | GGWCC | 1 cut(s) | 334 |
| AxyI | CCTNAGG | 1 cut(s) | 348 |
| BaeGI | GKGCMC | 1 cut(s) | 223 |
| BalI | TGGCCA | 1 cut(s) | 23 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 580, 612 |
| BccI | CCATC | 6 cut(s) | 44, 167, 667, 851, 917, 932 |
| BclI | TGATCA | 1 cut(s) | 442 |
| BcnI | CCSGG | 1 cut(s) | 739 |
| BfaI | CTAG | 2 cut(s) | 714, 867 |
| Bme1390I | CCNGG | 1 cut(s) | 739 |
| Bme18I | GGWCC | 1 cut(s) | 334 |
| BmgT120I | GGNCC | 4 cut(s) | 245, 334, 554, 578 |
| BmrFI | CCNGG | 1 cut(s) | 739 |
| BmrI | ACTGGG | 2 cut(s) | 226, 942 |
| BmsI | GCATC | 2 cut(s) | 304, 811 |
| BmuI | ACTGGG | 2 cut(s) | 226, 942 |
| BpuMI | CCSGG | 1 cut(s) | 739 |
| BsaBI | GATNNNNATC | 1 cut(s) | 861 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 709, 739 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 30, 353, 606 |
| Bse118I | RCCGGY | 1 cut(s) | 111 |
| Bse1I | ACTGG | 7 cut(s) | 221, 263, 295, 337, 527, 743, 948 |
| Bse21I | CCTNAGG | 1 cut(s) | 348 |
| Bse3DI | GCAATG | 1 cut(s) | 877 |
| Bse8I | GATNNNNATC | 1 cut(s) | 861 |
| BseGI | GGATG | 3 cut(s) | 55, 823, 928 |
| BseJI | GATNNNNATC | 1 cut(s) | 861 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 30, 353, 606 |
| BseMI | GCAATG | 1 cut(s) | 877 |
| BseMII | CTCAG | 2 cut(s) | 399, 927 |
| BseNI | ACTGG | 7 cut(s) | 221, 263, 295, 337, 527, 743, 948 |
| BseRI | GAGGAG | 1 cut(s) | 715 |
| BseSI | GKGCMC | 1 cut(s) | 223 |
| BshFI | GGCC | 6 cut(s) | 23, 111, 247, 555, 579, 742 |
| BsiSI | CCGG | 2 cut(s) | 112, 739 |
| BslFI | GGGAC | 2 cut(s) | 301, 940 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 30, 353, 606 |
| BsmFI | GGGAC | 2 cut(s) | 301, 940 |
| BsnI | GGCC | 6 cut(s) | 23, 111, 247, 555, 579, 742 |
| Bsp1286I | GDGCHC | 1 cut(s) | 223 |
| Bsp1407I | TGTACA | 1 cut(s) | 372 |
| Bsp143I | GATC | 5 cut(s) | 226, 421, 442, 523, 775 |
| BspANI | GGCC | 6 cut(s) | 23, 111, 247, 555, 579, 742 |
| BspCNI | CTCAG | 2 cut(s) | 398, 926 |
| BspPI | GGATC | 2 cut(s) | 518, 770 |
| BsrDI | GCAATG | 1 cut(s) | 877 |
| BsrFI | RCCGGY | 1 cut(s) | 111 |
| BsrGI | TGTACA | 1 cut(s) | 372 |
| BsrI | ACTGG | 7 cut(s) | 221, 263, 295, 337, 527, 743, 948 |
| BssAI | RCCGGY | 1 cut(s) | 111 |
| BssMI | GATC | 5 cut(s) | 226, 421, 442, 523, 775 |
| BssNAI | GTATAC | 1 cut(s) | 98 |
| Bst1107I | GTATAC | 1 cut(s) | 98 |
| Bst4CI | ACNGT | 3 cut(s) | 163, 323, 761 |
| Bst6I | CTCTTC | 1 cut(s) | 568 |
| BstAUI | TGTACA | 1 cut(s) | 372 |
| BstC8I | GCNNGC | 1 cut(s) | 594 |
| BstDEI | CTNAG | 3 cut(s) | 348, 385, 913 |
| BstF5I | GGATG | 3 cut(s) | 55, 823, 928 |
| BstKTI | GATC | 5 cut(s) | 229, 424, 445, 526, 778 |
| BstMBI | GATC | 5 cut(s) | 226, 421, 442, 523, 775 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 547 |
| BstNSI | RCATGY | 3 cut(s) | 467, 596, 854 |
| BstSCI | CCNGG | 1 cut(s) | 737 |
| BstSLI | GKGCMC | 1 cut(s) | 223 |
| BstX2I | RGATCY | 1 cut(s) | 523 |
| BstYI | RGATCY | 1 cut(s) | 523 |
| BstZ17I | GTATAC | 1 cut(s) | 98 |
| Bsu36I | CCTNAGG | 1 cut(s) | 348 |
| BsuRI | GGCC | 6 cut(s) | 23, 111, 247, 555, 579, 742 |
| BtsCI | GGATG | 3 cut(s) | 55, 823, 928 |
| BtsIMutI | CAGTG | 2 cut(s) | 750, 766 |
| Cac8I | GCNNGC | 1 cut(s) | 594 |
| Cfr10I | RCCGGY | 1 cut(s) | 111 |
| Cfr13I | GGNCC | 4 cut(s) | 245, 334, 554, 578 |
| Csp6I | GTAC | 1 cut(s) | 373 |
| CviAII | CATG | 8 cut(s) | 104, 224, 331, 368, 464, 593, 851, 956 |
| CviQI | GTAC | 1 cut(s) | 373 |
| DdeI | CTNAG | 3 cut(s) | 348, 385, 913 |
| DpnI | GATC | 5 cut(s) | 228, 423, 444, 525, 777 |
| DpnII | GATC | 5 cut(s) | 226, 421, 442, 523, 775 |
| EaeI | YGGCCR | 2 cut(s) | 21, 740 |
| Eam1104I | CTCTTC | 1 cut(s) | 568 |
| EarI | CTCTTC | 1 cut(s) | 568 |
| Eco32I | GATATC | 1 cut(s) | 270 |
| Eco47I | GGWCC | 1 cut(s) | 334 |
| Eco57I | CTGAAG | 2 cut(s) | 540, 948 |
| Eco81I | CCTNAGG | 1 cut(s) | 348 |
| EcoRV | GATATC | 1 cut(s) | 270 |
| FaeI | CATG | 8 cut(s) | 107, 227, 334, 371, 467, 596, 854, 959 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 677, 709 |
| FaqI | GGGAC | 2 cut(s) | 301, 940 |
| FatI | CATG | 8 cut(s) | 103, 223, 330, 367, 463, 592, 850, 955 |
| FbaI | TGATCA | 1 cut(s) | 442 |
| FblI | GTMKAC | 2 cut(s) | 97, 679 |
| FokI | GGATG | 3 cut(s) | 62, 830, 935 |
| FspBI | CTAG | 2 cut(s) | 714, 867 |
| HaeIII | GGCC | 6 cut(s) | 23, 111, 247, 555, 579, 742 |
| HapII | CCGG | 2 cut(s) | 112, 739 |
| Hin1II | CATG | 8 cut(s) | 107, 227, 334, 371, 467, 596, 854, 959 |
| HincII | GTYRAC | 1 cut(s) | 15 |
| HindII | GTYRAC | 1 cut(s) | 15 |
| HinfI | GANTC | 4 cut(s) | 8, 207, 767, 897 |
| HpaII | CCGG | 2 cut(s) | 112, 739 |
| HphI | GGTGA | 4 cut(s) | 65, 86, 629, 737 |
| Hpy166II | GTNNAC | 5 cut(s) | 15, 98, 145, 373, 680 |
| Hpy188I | TCNGA | 5 cut(s) | 757, 772, 916, 937, 967 |
| Hpy188III | TCNNGA | 1 cut(s) | 273 |
| Hpy8I | GTNNAC | 5 cut(s) | 15, 98, 145, 373, 680 |
| HpyAV | CCTTC | 2 cut(s) | 622, 682 |
| HpyCH4III | ACNGT | 3 cut(s) | 163, 323, 761 |
| HpyCH4IV | ACGT | 2 cut(s) | 456, 658 |
| HpyCH4V | TGCA | 4 cut(s) | 317, 406, 824, 955 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 547 |
| HpyF3I | CTNAG | 3 cut(s) | 348, 385, 913 |
| HpySE526I | ACGT | 2 cut(s) | 456, 658 |
| Hsp92II | CATG | 8 cut(s) | 107, 227, 334, 371, 467, 596, 854, 959 |
| Ksp22I | TGATCA | 1 cut(s) | 442 |
| Kzo9I | GATC | 5 cut(s) | 226, 421, 442, 523, 775 |
| LweI | GCATC | 2 cut(s) | 304, 811 |
| MaeI | CTAG | 2 cut(s) | 714, 867 |
| MaeII | ACGT | 2 cut(s) | 456, 658 |
| MaeIII | GTNAC | 3 cut(s) | 199, 307, 745 |
| MalI | GATC | 5 cut(s) | 228, 423, 444, 525, 777 |
| MboI | GATC | 5 cut(s) | 226, 421, 442, 523, 775 |
| MboII | GAAGA | 9 cut(s) | 405, 500, 515, 533, 585, 679, 682, 899, 954 |
| MfeI | CAATTG | 1 cut(s) | 249 |
| MflI | RGATCY | 1 cut(s) | 523 |
| MhlI | GDGCHC | 1 cut(s) | 223 |
| MlsI | TGGCCA | 1 cut(s) | 23 |
| MluCI | AATT | 7 cut(s) | 25, 191, 211, 249, 363, 438, 781 |
| MluNI | TGGCCA | 1 cut(s) | 23 |
| MmeI | TCCRAC | 5 cut(s) | 370, 439, 465, 511, 795 |
| Mox20I | TGGCCA | 1 cut(s) | 23 |
| MroXI | GAANNNNTTC | 1 cut(s) | 507 |
| MscI | TGGCCA | 1 cut(s) | 23 |
| MseI | TTAA | 2 cut(s) | 362, 695 |
| MslI | CAYNNNNRTG | 3 cut(s) | 429, 849, 855 |
| Msp20I | TGGCCA | 1 cut(s) | 23 |
| MspI | CCGG | 2 cut(s) | 112, 739 |
| MspR9I | CCNGG | 1 cut(s) | 739 |
| MunI | CAATTG | 1 cut(s) | 249 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 547 |
| NciI | CCSGG | 1 cut(s) | 739 |
| NdeII | GATC | 5 cut(s) | 226, 421, 442, 523, 775 |
| NlaIII | CATG | 8 cut(s) | 107, 227, 334, 371, 467, 596, 854, 959 |
| NmuCI | GTSAC | 3 cut(s) | 199, 307, 745 |
| NspI | RCATGY | 3 cut(s) | 467, 596, 854 |
| PaeI | GCATGC | 1 cut(s) | 596 |
| PdmI | GAANNNNTTC | 1 cut(s) | 507 |
| PfeI | GAWTC | 4 cut(s) | 8, 207, 767, 897 |
| PflFI | GACNNNGTC | 1 cut(s) | 332 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 30 |
| PspPI | GGNCC | 4 cut(s) | 245, 334, 554, 578 |
| PsuI | RGATCY | 1 cut(s) | 523 |
| PsyI | GACNNNGTC | 1 cut(s) | 332 |
| RsaI | GTAC | 1 cut(s) | 374 |
| RsaNI | GTAC | 1 cut(s) | 373 |
| RseI | CAYNNNNRTG | 3 cut(s) | 429, 849, 855 |
| SaqAI | TTAA | 2 cut(s) | 362, 695 |
| Sau3AI | GATC | 5 cut(s) | 226, 421, 442, 523, 775 |
| Sau96I | GGNCC | 4 cut(s) | 245, 334, 554, 578 |
| ScrFI | CCNGG | 1 cut(s) | 739 |
| SduI | GDGCHC | 1 cut(s) | 223 |
| SfaNI | GCATC | 2 cut(s) | 304, 811 |
| SinI | GGWCC | 1 cut(s) | 334 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 429, 849, 855 |
| SphI | GCATGC | 1 cut(s) | 596 |
| Sse9I | AATT | 7 cut(s) | 25, 191, 211, 249, 363, 438, 781 |
| SspMI | CTAG | 2 cut(s) | 714, 867 |
| StyD4I | CCNGG | 1 cut(s) | 737 |
| TaaI | ACNGT | 3 cut(s) | 163, 323, 761 |
| TaiI | ACGT | 2 cut(s) | 459, 661 |
| TaqI | TCGA | 1 cut(s) | 876 |
| TasI | AATT | 7 cut(s) | 25, 191, 211, 249, 363, 438, 781 |
| TatI | WGTACW | 1 cut(s) | 372 |
| TfiI | GAWTC | 4 cut(s) | 8, 207, 767, 897 |
| Tru1I | TTAA | 2 cut(s) | 362, 695 |
| Tru9I | TTAA | 2 cut(s) | 362, 695 |
| TscAI | CASTG | 2 cut(s) | 750, 766 |
| TseFI | GTSAC | 3 cut(s) | 199, 307, 745 |
| Tsp45I | GTSAC | 3 cut(s) | 199, 307, 745 |
| TspDTI | ATGAA | 4 cut(s) | 331, 356, 450, 833 |
| TspGWI | ACGGA | 1 cut(s) | 84 |
| TspRI | CASTG | 2 cut(s) | 750, 766 |
| Tth111I | GACNNNGTC | 1 cut(s) | 332 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 30 |
| VpaK11BI | GGWCC | 1 cut(s) | 334 |
| XceI | RCATGY | 3 cut(s) | 467, 596, 854 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 255 |
| XmiI | GTMKAC | 2 cut(s) | 97, 679 |
| XmnI | GAANNNNTTC | 1 cut(s) | 507 |
| XspI | CTAG | 2 cut(s) | 714, 867 |