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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 507 |
| AcuI | CTGAAG | 1 cut(s) | 84 |
| AfaI | GTAC | 2 cut(s) | 83, 254 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 57 |
| AflIII | ACRYGT | 1 cut(s) | 398 |
| AgsI | TTSAA | 6 cut(s) | 224, 229, 283, 365, 449, 635 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 170, 202 |
| AluBI | AGCT | 3 cut(s) | 371, 457, 488 |
| AluI | AGCT | 3 cut(s) | 371, 457, 488 |
| AoxI | GGCC | 2 cut(s) | 427, 476 |
| ApeKI | GCWGC | 1 cut(s) | 341 |
| AspS9I | GGNCC | 1 cut(s) | 428 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 441, 473 |
| BbvI | GCAGC | 1 cut(s) | 353 |
| BccI | CCATC | 4 cut(s) | 125, 163, 416, 590 |
| BfaI | CTAG | 1 cut(s) | 156 |
| BfmI | CTRYAG | 2 cut(s) | 339, 519 |
| BglII | AGATCT | 2 cut(s) | 180, 308 |
| BisI | GCNGC | 1 cut(s) | 342 |
| BlsI | GCNGC | 1 cut(s) | 343 |
| BmgT120I | GGNCC | 1 cut(s) | 428 |
| BmiI | GGNNCC | 1 cut(s) | 264 |
| BpuEI | CTTGAG | 1 cut(s) | 446 |
| BsaBI | GATNNNNATC | 1 cut(s) | 318 |
| BsaJI | CCNNGG | 1 cut(s) | 289 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 344, 374, 396, 426 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 57 |
| Bse3DI | GCAATG | 1 cut(s) | 234 |
| Bse8I | GATNNNNATC | 1 cut(s) | 318 |
| BseDI | CCNNGG | 1 cut(s) | 289 |
| BseGI | GGATG | 2 cut(s) | 31, 427 |
| BseJI | GATNNNNATC | 1 cut(s) | 318 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 57 |
| BseMI | GCAATG | 1 cut(s) | 234 |
| BseMII | CTCAG | 2 cut(s) | 480, 633 |
| BseRI | GAGGAG | 1 cut(s) | 275 |
| BseXI | GCAGC | 1 cut(s) | 353 |
| BseYI | CCCAGC | 1 cut(s) | 551 |
| BshFI | GGCC | 2 cut(s) | 429, 478 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 57 |
| BsnI | GGCC | 2 cut(s) | 429, 478 |
| Bsp143I | GATC | 4 cut(s) | 180, 308, 442, 628 |
| BspACI | CCGC | 1 cut(s) | 507 |
| BspANI | GGCC | 2 cut(s) | 429, 478 |
| BspCNI | CTCAG | 2 cut(s) | 481, 632 |
| BspLI | GGNNCC | 1 cut(s) | 264 |
| BspMAI | CTGCAG | 2 cut(s) | 343, 523 |
| BsrDI | GCAATG | 1 cut(s) | 234 |
| BssECI | CCNNGG | 1 cut(s) | 289 |
| BssMI | GATC | 4 cut(s) | 180, 308, 442, 628 |
| BssT1I | CCWWGG | 1 cut(s) | 289 |
| Bst4CI | ACNGT | 3 cut(s) | 203, 334, 390 |
| BstC8I | GCNNGC | 4 cut(s) | 381, 486, 519, 557 |
| BstDEI | CTNAG | 2 cut(s) | 489, 619 |
| BstF5I | GGATG | 2 cut(s) | 31, 427 |
| BstKTI | GATC | 4 cut(s) | 183, 311, 445, 631 |
| BstMBI | GATC | 4 cut(s) | 180, 308, 442, 628 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 523, 556 |
| BstNSI | RCATGY | 3 cut(s) | 302, 383, 402 |
| BstSFI | CTRYAG | 2 cut(s) | 339, 519 |
| BstV1I | GCAGC | 1 cut(s) | 353 |
| BstX2I | RGATCY | 2 cut(s) | 180, 308 |
| BstYI | RGATCY | 2 cut(s) | 180, 308 |
| BsuRI | GGCC | 2 cut(s) | 429, 478 |
| BtsCI | GGATG | 2 cut(s) | 31, 427 |
| BtsIMutI | CAGTG | 1 cut(s) | 330 |
| Cac8I | GCNNGC | 4 cut(s) | 381, 486, 519, 557 |
| Cfr13I | GGNCC | 1 cut(s) | 428 |
| Csp6I | GTAC | 2 cut(s) | 82, 253 |
| CviAII | CATG | 4 cut(s) | 101, 299, 380, 399 |
| CviQI | GTAC | 2 cut(s) | 82, 253 |
| DdeI | CTNAG | 2 cut(s) | 489, 619 |
| DpnI | GATC | 4 cut(s) | 182, 310, 444, 630 |
| DpnII | GATC | 4 cut(s) | 180, 308, 442, 628 |
| Eco130I | CCWWGG | 1 cut(s) | 289 |
| Eco147I | AGGCCT | 1 cut(s) | 478 |
| Eco32I | GATATC | 1 cut(s) | 607 |
| Eco57I | CTGAAG | 1 cut(s) | 84 |
| EcoRV | GATATC | 1 cut(s) | 607 |
| EcoT14I | CCWWGG | 1 cut(s) | 289 |
| ErhI | CCWWGG | 1 cut(s) | 289 |
| FaeI | CATG | 4 cut(s) | 104, 302, 383, 402 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 170, 202 |
| FatI | CATG | 4 cut(s) | 100, 298, 379, 398 |
| FauI | CCCGC | 1 cut(s) | 500 |
| Fnu4HI | GCNGC | 1 cut(s) | 342 |
| FokI | GGATG | 2 cut(s) | 38, 434 |
| Fsp4HI | GCNGC | 1 cut(s) | 342 |
| FspBI | CTAG | 1 cut(s) | 156 |
| GluI | GCNGC | 1 cut(s) | 342 |
| GsaI | CCCAGC | 1 cut(s) | 555 |
| HaeIII | GGCC | 2 cut(s) | 429, 478 |
| Hin1II | CATG | 4 cut(s) | 104, 302, 383, 402 |
| HincII | GTYRAC | 2 cut(s) | 499, 616 |
| HindII | GTYRAC | 2 cut(s) | 499, 616 |
| HinfI | GANTC | 4 cut(s) | 36, 94, 587, 617 |
| HpaI | GTTAAC | 1 cut(s) | 499 |
| Hpy166II | GTNNAC | 3 cut(s) | 206, 499, 616 |
| Hpy188I | TCNGA | 6 cut(s) | 64, 313, 565, 592, 604, 622 |
| Hpy188III | TCNNGA | 4 cut(s) | 33, 71, 446, 632 |
| Hpy8I | GTNNAC | 3 cut(s) | 206, 499, 616 |
| HpyAV | CCTTC | 1 cut(s) | 487 |
| HpyCH4III | ACNGT | 3 cut(s) | 203, 334, 390 |
| HpyCH4V | TGCA | 3 cut(s) | 341, 379, 521 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 523, 556 |
| HpyF3I | CTNAG | 2 cut(s) | 489, 619 |
| Hsp92II | CATG | 4 cut(s) | 104, 302, 383, 402 |
| KspAI | GTTAAC | 1 cut(s) | 499 |
| Kzo9I | GATC | 4 cut(s) | 180, 308, 442, 628 |
| LmnI | GCTCC | 2 cut(s) | 262, 454 |
| Lsp1109I | GCAGC | 1 cut(s) | 353 |
| MaeI | CTAG | 1 cut(s) | 156 |
| MalI | GATC | 4 cut(s) | 182, 310, 444, 630 |
| MboI | GATC | 4 cut(s) | 180, 308, 442, 628 |
| MboII | GAAGA | 4 cut(s) | 19, 190, 318, 377 |
| MflI | RGATCY | 2 cut(s) | 180, 308 |
| MluCI | AATT | 2 cut(s) | 224, 373 |
| MlyI | GAGTC | 1 cut(s) | 611 |
| MnlI | CCTC | 5 cut(s) | 16, 167, 253, 412, 559 |
| MseI | TTAA | 5 cut(s) | 162, 327, 414, 498, 658 |
| MslI | CAYNNNNRTG | 2 cut(s) | 102, 105 |
| MspA1I | CMGCKG | 1 cut(s) | 488 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 523, 556 |
| NdeII | GATC | 4 cut(s) | 180, 308, 442, 628 |
| NlaIII | CATG | 4 cut(s) | 104, 302, 383, 402 |
| NlaIV | GGNNCC | 1 cut(s) | 264 |
| NspI | RCATGY | 3 cut(s) | 302, 383, 402 |
| PaeI | GCATGC | 1 cut(s) | 383 |
| PceI | AGGCCT | 1 cut(s) | 478 |
| PciI | ACATGT | 1 cut(s) | 398 |
| PfeI | GAWTC | 3 cut(s) | 36, 94, 587 |
| PkrI | GCNGC | 1 cut(s) | 343 |
| PleI | GAGTC | 1 cut(s) | 611 |
| PpsI | GAGTC | 1 cut(s) | 611 |
| PscI | ACATGT | 1 cut(s) | 398 |
| PspFI | CCCAGC | 1 cut(s) | 551 |
| PspN4I | GGNNCC | 1 cut(s) | 264 |
| PspPI | GGNCC | 1 cut(s) | 428 |
| PstI | CTGCAG | 2 cut(s) | 343, 523 |
| PsuI | RGATCY | 2 cut(s) | 180, 308 |
| PvuII | CAGCTG | 1 cut(s) | 488 |
| RsaI | GTAC | 2 cut(s) | 83, 254 |
| RsaNI | GTAC | 2 cut(s) | 82, 253 |
| RseI | CAYNNNNRTG | 2 cut(s) | 102, 105 |
| SaqAI | TTAA | 5 cut(s) | 162, 327, 414, 498, 658 |
| SatI | GCNGC | 1 cut(s) | 342 |
| Sau3AI | GATC | 4 cut(s) | 180, 308, 442, 628 |
| Sau96I | GGNCC | 1 cut(s) | 428 |
| SchI | GAGTC | 1 cut(s) | 611 |
| SetI | ASST | 7 cut(s) | 62, 161, 373, 459, 490, 498, 570 |
| SfcI | CTRYAG | 2 cut(s) | 339, 519 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 102, 105 |
| SmlI | CTYRAG | 1 cut(s) | 461 |
| SmoI | CTYRAG | 1 cut(s) | 461 |
| SphI | GCATGC | 1 cut(s) | 383 |
| Sse9I | AATT | 2 cut(s) | 224, 373 |
| SseBI | AGGCCT | 1 cut(s) | 478 |
| SsiI | CCGC | 1 cut(s) | 507 |
| SspMI | CTAG | 1 cut(s) | 156 |
| StuI | AGGCCT | 1 cut(s) | 478 |
| StyI | CCWWGG | 1 cut(s) | 289 |
| TaaI | ACNGT | 3 cut(s) | 203, 334, 390 |
| TasI | AATT | 2 cut(s) | 224, 373 |
| TatI | WGTACW | 1 cut(s) | 81 |
| TfiI | GAWTC | 3 cut(s) | 36, 94, 587 |
| Tru1I | TTAA | 5 cut(s) | 162, 327, 414, 498, 658 |
| Tru9I | TTAA | 5 cut(s) | 162, 327, 414, 498, 658 |
| TscAI | CASTG | 1 cut(s) | 337 |
| TseI | GCWGC | 1 cut(s) | 341 |
| TspDTI | ATGAA | 3 cut(s) | 86, 330, 600 |
| TspGWI | ACGGA | 1 cut(s) | 207 |
| TspRI | CASTG | 1 cut(s) | 337 |
| XceI | RCATGY | 3 cut(s) | 302, 383, 402 |
| XspI | CTAG | 1 cut(s) | 156 |