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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2647 |
| AccI | GTMKAC | 1 cut(s) | 59 |
| AccII | CGCG | 1 cut(s) | 12 |
| AccIII | TCCGGA | 1 cut(s) | 1033 |
| AciI | CCGC | 5 cut(s) | 10, 212, 1048, 1192, 1939 |
| AclWI | GGATC | 7 cut(s) | 233, 246, 954, 967, 1273, 1850, 2493 |
| AcoI | YGGCCR | 2 cut(s) | 1015, 1322 |
| AcsI | RAATTY | 6 cut(s) | 641, 762, 866, 1676, 2091, 2543 |
| AdeI | CACNNNGTG | 1 cut(s) | 1622 |
| AfaI | GTAC | 4 cut(s) | 434, 1305, 1991, 2452 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 235, 460, 631, 1336, 1896, 2420 |
| AflII | CTTAAG | 2 cut(s) | 827, 1552 |
| AgsI | TTSAA | 9 cut(s) | 19, 185, 1173, 1592, 1767, 2048, 2075, 2501, 2543 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 175 |
| AhlI | ACTAGT | 1 cut(s) | 293 |
| AjiI | CACGTC | 1 cut(s) | 1982 |
| AjnI | CCWGG | 6 cut(s) | 228, 342, 955, 2055, 2356, 2595 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 99, 131 |
| Alw21I | GWGCWC | 1 cut(s) | 1588 |
| Alw26I | GTCTC | 9 cut(s) | 9, 144, 154, 183, 896, 1749, 2029, 2252, 2513 |
| AlwI | GGATC | 7 cut(s) | 233, 246, 954, 967, 1273, 1850, 2493 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 157 |
| Ama87I | CYCGRG | 1 cut(s) | 1800 |
| Aor13HI | TCCGGA | 1 cut(s) | 1033 |
| AoxI | GGCC | 5 cut(s) | 607, 1015, 1322, 1498, 1887 |
| ApeKI | GCWGC | 5 cut(s) | 151, 518, 771, 1290, 1999 |
| ApoI | RAATTY | 6 cut(s) | 641, 762, 866, 1676, 2091, 2543 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1677 |
| AspLEI | GCGC | 2 cut(s) | 14, 1740 |
| AspS9I | GGNCC | 5 cut(s) | 329, 608, 1246, 1499, 1888 |
| AsuHPI | GGTGA | 2 cut(s) | 551, 1634 |
| AvaI | CYCGRG | 1 cut(s) | 1800 |
| AvaII | GGWCC | 2 cut(s) | 329, 1246 |
| BalI | TGGCCA | 2 cut(s) | 1017, 1324 |
| BamHI | GGATCC | 2 cut(s) | 238, 959 |
| BauI | CACGAG | 1 cut(s) | 742 |
| BbsI | GAAGAC | 4 cut(s) | 230, 264, 1158, 2343 |
| Bbv12I | GWGCWC | 1 cut(s) | 1588 |
| BbvI | GCAGC | 5 cut(s) | 163, 505, 783, 1277, 2011 |
| BccI | CCATC | 6 cut(s) | 530, 1135, 1304, 1343, 1709, 2368 |
| BceAI | ACGGC | 1 cut(s) | 1937 |
| BciT130I | CCWGG | 6 cut(s) | 230, 344, 957, 2057, 2358, 2597 |
| BciVI | GTATCC | 1 cut(s) | 2488 |
| BclI | TGATCA | 1 cut(s) | 319 |
| BcoDI | GTCTC | 9 cut(s) | 9, 144, 154, 183, 896, 1749, 2029, 2252, 2513 |
| BcuI | ACTAGT | 1 cut(s) | 293 |
| BfaI | CTAG | 7 cut(s) | 120, 294, 485, 863, 1076, 2430, 2576 |
| BfmI | CTRYAG | 2 cut(s) | 391, 1255 |
| BfrI | CTTAAG | 2 cut(s) | 827, 1552 |
| BfuI | GTATCC | 1 cut(s) | 2488 |
| BisI | GCNGC | 5 cut(s) | 152, 519, 772, 1291, 2000 |
| BlpI | GCTNAGC | 1 cut(s) | 147 |
| BlsI | GCNGC | 5 cut(s) | 153, 520, 773, 1292, 2001 |
| Bme1390I | CCNGG | 6 cut(s) | 230, 344, 957, 2057, 2358, 2597 |
| Bme18I | GGWCC | 2 cut(s) | 329, 1246 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 175 |
| BmeT110I | CYCGRG | 1 cut(s) | 1800 |
| BmgBI | CACGTC | 1 cut(s) | 1982 |
| BmgT120I | GGNCC | 5 cut(s) | 329, 608, 1246, 1499, 1888 |
| BmiI | GGNNCC | 7 cut(s) | 240, 331, 375, 610, 961, 1720, 1957 |
| BmrFI | CCNGG | 6 cut(s) | 230, 344, 957, 2057, 2358, 2597 |
| BmrI | ACTGGG | 3 cut(s) | 606, 640, 955 |
| BmsI | GCATC | 6 cut(s) | 269, 389, 897, 1081, 1462, 1647 |
| BmuI | ACTGGG | 3 cut(s) | 606, 640, 955 |
| BpiI | GAAGAC | 4 cut(s) | 230, 264, 1158, 2343 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1469, 1501 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 147 |
| BpuEI | CTTGAG | 1 cut(s) | 1690 |
| BsaBI | GATNNNNATC | 2 cut(s) | 540, 737 |
| BsaI | GGTCTC | 2 cut(s) | 896, 2252 |
| BsaJI | CCNNGG | 7 cut(s) | 228, 342, 454, 679, 963, 2262, 2481 |
| BsaWI | WCCGGW | 1 cut(s) | 1033 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 235, 460, 631, 1336, 1896, 2420 |
| Bse118I | RCCGGY | 2 cut(s) | 822, 1805 |
| Bse1I | ACTGG | 8 cut(s) | 612, 635, 775, 901, 950, 1741, 2425, 2458 |
| Bse3DI | GCAATG | 2 cut(s) | 1050, 2010 |
| Bse8I | GATNNNNATC | 2 cut(s) | 540, 737 |
| BseAI | TCCGGA | 1 cut(s) | 1033 |
| BseBI | CCWGG | 6 cut(s) | 230, 344, 957, 2057, 2358, 2597 |
| BseDI | CCNNGG | 7 cut(s) | 228, 342, 454, 679, 963, 2262, 2481 |
| BseGI | GGATG | 6 cut(s) | 284, 380, 1224, 1453, 1662, 2246 |
| BseJI | GATNNNNATC | 2 cut(s) | 540, 737 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 235, 460, 631, 1336, 1896, 2420 |
| BseMI | GCAATG | 2 cut(s) | 1050, 2010 |
| BseMII | CTCAG | 4 cut(s) | 149, 161, 2247, 2262 |
| BseNI | ACTGG | 8 cut(s) | 612, 635, 775, 901, 950, 1741, 2425, 2458 |
| BseRI | GAGGAG | 5 cut(s) | 43, 263, 1260, 2559, 2562 |
| BseXI | GCAGC | 5 cut(s) | 163, 505, 783, 1277, 2011 |
| Bsh1236I | CGCG | 1 cut(s) | 12 |
| BshFI | GGCC | 5 cut(s) | 609, 1017, 1324, 1500, 1889 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1588 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1800 |
| BsiSI | CCGG | 3 cut(s) | 823, 1034, 1806 |
| BslFI | GGGAC | 4 cut(s) | 79, 301, 2178, 2383 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 235, 460, 631, 1336, 1896, 2420 |
| BsmAI | GTCTC | 9 cut(s) | 9, 144, 154, 183, 896, 1749, 2029, 2252, 2513 |
| BsmBI | CGTCTC | 2 cut(s) | 144, 2029 |
| BsmFI | GGGAC | 4 cut(s) | 79, 301, 2178, 2383 |
| BsmI | GAATGC | 2 cut(s) | 509, 2367 |
| BsnI | GGCC | 5 cut(s) | 609, 1017, 1324, 1500, 1889 |
| Bso31I | GGTCTC | 2 cut(s) | 896, 2252 |
| BsoBI | CYCGRG | 1 cut(s) | 1800 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1588 |
| Bsp13I | TCCGGA | 1 cut(s) | 1033 |
| Bsp1407I | TGTACA | 2 cut(s) | 432, 1989 |
| Bsp143I | GATC | 9 cut(s) | 238, 319, 541, 959, 1022, 1265, 1855, 2110, 2485 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 147 |
| Bsp19I | CCATGG | 3 cut(s) | 454, 679, 2481 |
| BspACI | CCGC | 5 cut(s) | 10, 212, 1048, 1192, 1939 |
| BspANI | GGCC | 5 cut(s) | 609, 1017, 1324, 1500, 1889 |
| BspCNI | CTCAG | 4 cut(s) | 150, 160, 2248, 2263 |
| BspEI | TCCGGA | 1 cut(s) | 1033 |
| BspFNI | CGCG | 1 cut(s) | 12 |
| BspLI | GGNNCC | 7 cut(s) | 240, 331, 375, 610, 961, 1720, 1957 |
| BspMAI | CTGCAG | 1 cut(s) | 395 |
| BspPI | GGATC | 7 cut(s) | 233, 246, 954, 967, 1273, 1850, 2493 |
| BspTI | CTTAAG | 2 cut(s) | 827, 1552 |
| BspTNI | GGTCTC | 2 cut(s) | 896, 2252 |
| BsrDI | GCAATG | 2 cut(s) | 1050, 2010 |
| BsrFI | RCCGGY | 2 cut(s) | 822, 1805 |
| BsrGI | TGTACA | 2 cut(s) | 432, 1989 |
| BsrI | ACTGG | 8 cut(s) | 612, 635, 775, 901, 950, 1741, 2425, 2458 |
| BssAI | RCCGGY | 2 cut(s) | 822, 1805 |
| BssECI | CCNNGG | 7 cut(s) | 228, 342, 454, 679, 963, 2262, 2481 |
| BssMI | GATC | 9 cut(s) | 238, 319, 541, 959, 1022, 1265, 1855, 2110, 2485 |
| BssSI | CACGAG | 1 cut(s) | 742 |
| BssT1I | CCWWGG | 4 cut(s) | 454, 679, 963, 2481 |
| Bst2BI | CACGAG | 1 cut(s) | 742 |
| Bst2UI | CCWGG | 6 cut(s) | 230, 344, 957, 2057, 2358, 2597 |
| Bst4CI | ACNGT | 2 cut(s) | 72, 1569 |
| Bst6I | CTCTTC | 2 cut(s) | 186, 560 |
| BstAFI | CTTAAG | 2 cut(s) | 827, 1552 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1481 |
| BstAUI | TGTACA | 2 cut(s) | 432, 1989 |
| BstC8I | GCNNGC | 1 cut(s) | 1584 |
| BstDEI | CTNAG | 6 cut(s) | 147, 158, 648, 2256, 2271, 2517 |
| BstDSI | CCRYGG | 4 cut(s) | 454, 679, 2262, 2481 |
| BstF5I | GGATG | 6 cut(s) | 284, 380, 1224, 1453, 1662, 2246 |
| BstFNI | CGCG | 1 cut(s) | 12 |
| BstHHI | GCGC | 2 cut(s) | 14, 1740 |
| BstKTI | GATC | 9 cut(s) | 241, 322, 544, 962, 1025, 1268, 1858, 2113, 2488 |
| BstMAI | GTCTC | 9 cut(s) | 9, 144, 154, 183, 896, 1749, 2029, 2252, 2513 |
| BstMBI | GATC | 9 cut(s) | 238, 319, 541, 959, 1022, 1265, 1855, 2110, 2485 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 515, 1069, 1432, 1481, 1921, 2158 |
| BstNI | CCWGG | 6 cut(s) | 230, 344, 957, 2057, 2358, 2597 |
| BstNSI | RCATGY | 2 cut(s) | 861, 1928 |
| BstSCI | CCNGG | 6 cut(s) | 228, 342, 955, 2055, 2356, 2595 |
| BstSFI | CTRYAG | 2 cut(s) | 391, 1255 |
| BstUI | CGCG | 1 cut(s) | 12 |
| BstV1I | GCAGC | 5 cut(s) | 163, 505, 783, 1277, 2011 |
| BstV2I | GAAGAC | 4 cut(s) | 230, 264, 1158, 2343 |
| BstX2I | RGATCY | 3 cut(s) | 238, 959, 1265 |
| BstYI | RGATCY | 3 cut(s) | 238, 959, 1265 |
| BsuI | GTATCC | 1 cut(s) | 2488 |
| BsuRI | GGCC | 5 cut(s) | 609, 1017, 1324, 1500, 1889 |
| BtgI | CCRYGG | 4 cut(s) | 454, 679, 2262, 2481 |
| BtrI | CACGTC | 1 cut(s) | 1982 |
| BtsCI | GGATG | 6 cut(s) | 284, 380, 1224, 1453, 1662, 2246 |
| BtsIMutI | CAGTG | 4 cut(s) | 894, 1574, 1837, 2418 |
| Cac8I | GCNNGC | 1 cut(s) | 1584 |
| CaiI | CAGNNNCTG | 1 cut(s) | 157 |
| CfoI | GCGC | 2 cut(s) | 14, 1740 |
| Cfr10I | RCCGGY | 2 cut(s) | 822, 1805 |
| Cfr13I | GGNCC | 5 cut(s) | 329, 608, 1246, 1499, 1888 |
| Csp6I | GTAC | 4 cut(s) | 433, 1304, 1990, 2451 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2407, 2442 |
| CviQI | GTAC | 4 cut(s) | 433, 1304, 1990, 2451 |
| DdeI | CTNAG | 6 cut(s) | 147, 158, 648, 2256, 2271, 2517 |
| DpnI | GATC | 9 cut(s) | 240, 321, 543, 961, 1024, 1267, 1857, 2112, 2487 |
| DpnII | GATC | 9 cut(s) | 238, 319, 541, 959, 1022, 1265, 1855, 2110, 2485 |
| DraI | TTTAAA | 1 cut(s) | 871 |
| DraIII | CACNNNGTG | 1 cut(s) | 1622 |
| DriI | GACNNNNNGTC | 1 cut(s) | 175 |
| EaeI | YGGCCR | 2 cut(s) | 1015, 1322 |
| Eam1104I | CTCTTC | 2 cut(s) | 186, 560 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 175 |
| EarI | CTCTTC | 2 cut(s) | 186, 560 |
| EciI | GGCGGA | 1 cut(s) | 1928 |
| Eco130I | CCWWGG | 4 cut(s) | 454, 679, 963, 2481 |
| Eco31I | GGTCTC | 2 cut(s) | 896, 2252 |
| Eco47I | GGWCC | 2 cut(s) | 329, 1246 |
| Eco88I | CYCGRG | 1 cut(s) | 1800 |
| EcoO109I | RGGNCCY | 2 cut(s) | 329, 1246 |
| EcoRI | GAATTC | 1 cut(s) | 641 |
| EcoRII | CCWGG | 6 cut(s) | 228, 342, 955, 2055, 2356, 2595 |
| EcoT14I | CCWWGG | 4 cut(s) | 454, 679, 963, 2481 |
| ErhI | CCWWGG | 4 cut(s) | 454, 679, 963, 2481 |
| Esp3I | CGTCTC | 2 cut(s) | 144, 2029 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 12, 44, 2067, 2099 |
| FaqI | GGGAC | 4 cut(s) | 79, 301, 2178, 2383 |
| FauI | CCCGC | 1 cut(s) | 1185 |
| FbaI | TGATCA | 1 cut(s) | 319 |
| FblI | GTMKAC | 1 cut(s) | 59 |
| Fnu4HI | GCNGC | 5 cut(s) | 152, 519, 772, 1291, 2000 |
| FokI | GGATG | 6 cut(s) | 291, 367, 1211, 1460, 1669, 2233 |
| Fsp4HI | GCNGC | 5 cut(s) | 152, 519, 772, 1291, 2000 |
| FspBI | CTAG | 7 cut(s) | 120, 294, 485, 863, 1076, 2430, 2576 |
| GlaI | GCGC | 2 cut(s) | 13, 1739 |
| GluI | GCNGC | 5 cut(s) | 152, 519, 772, 1291, 2000 |
| HaeIII | GGCC | 5 cut(s) | 609, 1017, 1324, 1500, 1889 |
| HapII | CCGG | 3 cut(s) | 823, 1034, 1806 |
| HhaI | GCGC | 2 cut(s) | 14, 1740 |
| Hin6I | GCGC | 2 cut(s) | 12, 1738 |
| HinP1I | GCGC | 2 cut(s) | 12, 1738 |
| HincII | GTYRAC | 3 cut(s) | 60, 1753, 2291 |
| HindII | GTYRAC | 3 cut(s) | 60, 1753, 2291 |
| HinfI | GANTC | 9 cut(s) | 162, 551, 1358, 1822, 1867, 2201, 2267, 2382, 2497 |
| HpaII | CCGG | 3 cut(s) | 823, 1034, 1806 |
| HphI | GGTGA | 2 cut(s) | 551, 1634 |
| Hpy166II | GTNNAC | 5 cut(s) | 60, 676, 1753, 1990, 2291 |
| Hpy188I | TCNGA | 8 cut(s) | 411, 501, 564, 784, 1443, 2119, 2257, 2272 |
| Hpy8I | GTNNAC | 5 cut(s) | 60, 676, 1753, 1990, 2291 |
| Hpy99I | CGWCG | 5 cut(s) | 61, 79, 82, 85, 2445 |
| HpyCH4III | ACNGT | 2 cut(s) | 72, 1569 |
| HpyCH4IV | ACGT | 1 cut(s) | 1981 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 515, 1069, 1432, 1481, 1921, 2158 |
| HpyF3I | CTNAG | 6 cut(s) | 147, 158, 648, 2256, 2271, 2517 |
| HpySE526I | ACGT | 1 cut(s) | 1981 |
| HspAI | GCGC | 2 cut(s) | 12, 1738 |
| Kpn2I | TCCGGA | 1 cut(s) | 1033 |
| Ksp22I | TGATCA | 1 cut(s) | 319 |
| Kzo9I | GATC | 9 cut(s) | 238, 319, 541, 959, 1022, 1265, 1855, 2110, 2485 |
| LmnI | GCTCC | 6 cut(s) | 159, 976, 1036, 1404, 1423, 2572 |
| Lsp1109I | GCAGC | 5 cut(s) | 163, 505, 783, 1277, 2011 |
| LweI | GCATC | 6 cut(s) | 269, 389, 897, 1081, 1462, 1647 |
| MaeI | CTAG | 7 cut(s) | 120, 294, 485, 863, 1076, 2430, 2576 |
| MaeII | ACGT | 1 cut(s) | 1981 |
| MaeIII | GTNAC | 4 cut(s) | 1209, 1412, 1643, 2236 |
| MalI | GATC | 9 cut(s) | 240, 321, 543, 961, 1024, 1267, 1857, 2112, 2487 |
| MboI | GATC | 9 cut(s) | 238, 319, 541, 959, 1022, 1265, 1855, 2110, 2485 |
| MboII | GAAGA | 8 cut(s) | 173, 235, 269, 577, 1163, 2235, 2348, 2632 |
| MfeI | CAATTG | 1 cut(s) | 504 |
| MflI | RGATCY | 3 cut(s) | 238, 959, 1265 |
| MhlI | GDGCHC | 1 cut(s) | 1588 |
| MlsI | TGGCCA | 2 cut(s) | 1017, 1324 |
| MluNI | TGGCCA | 2 cut(s) | 1017, 1324 |
| MlyI | GAGTC | 2 cut(s) | 156, 2391 |
| MmeI | TCCRAC | 1 cut(s) | 1426 |
| Mox20I | TGGCCA | 2 cut(s) | 1017, 1324 |
| MroI | TCCGGA | 1 cut(s) | 1033 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1677 |
| MscI | TGGCCA | 2 cut(s) | 1017, 1324 |
| MslI | CAYNNNNRTG | 3 cut(s) | 277, 2331, 2528 |
| Msp20I | TGGCCA | 2 cut(s) | 1017, 1324 |
| MspCI | CTTAAG | 2 cut(s) | 827, 1552 |
| MspI | CCGG | 3 cut(s) | 823, 1034, 1806 |
| MspR9I | CCNGG | 6 cut(s) | 230, 344, 957, 2057, 2358, 2597 |
| MunI | CAATTG | 1 cut(s) | 504 |
| Mva1269I | GAATGC | 2 cut(s) | 509, 2367 |
| MvaI | CCWGG | 6 cut(s) | 230, 344, 957, 2057, 2358, 2597 |
| MvnI | CGCG | 1 cut(s) | 12 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 515, 1069, 1432, 1481, 1921, 2158 |
| NcoI | CCATGG | 3 cut(s) | 454, 679, 2481 |
| NdeII | GATC | 9 cut(s) | 238, 319, 541, 959, 1022, 1265, 1855, 2110, 2485 |
| NlaIV | GGNNCC | 7 cut(s) | 240, 331, 375, 610, 961, 1720, 1957 |
| NmuCI | GTSAC | 1 cut(s) | 2236 |
| NspI | RCATGY | 2 cut(s) | 861, 1928 |
| PaeR7I | CTCGAG | 1 cut(s) | 1800 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 80 |
| PctI | GAATGC | 2 cut(s) | 509, 2367 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1677 |
| PfeI | GAWTC | 7 cut(s) | 551, 1358, 1822, 1867, 2201, 2267, 2497 |
| PflFI | GACNNNGTC | 1 cut(s) | 1157 |
| PfoI | TCCNGGA | 2 cut(s) | 2055, 2595 |
| PkrI | GCNGC | 5 cut(s) | 153, 520, 773, 1292, 2001 |
| PleI | GAGTC | 2 cut(s) | 156, 2390 |
| PpsI | GAGTC | 2 cut(s) | 156, 2390 |
| PpuMI | RGGWCCY | 2 cut(s) | 329, 1246 |
| PsiI | TTATAA | 1 cut(s) | 2647 |
| Psp5II | RGGWCCY | 2 cut(s) | 329, 1246 |
| Psp6I | CCWGG | 6 cut(s) | 228, 342, 955, 2055, 2356, 2595 |
| PspGI | CCWGG | 6 cut(s) | 228, 342, 955, 2055, 2356, 2595 |
| PspN4I | GGNNCC | 7 cut(s) | 240, 331, 375, 610, 961, 1720, 1957 |
| PspPI | GGNCC | 5 cut(s) | 329, 608, 1246, 1499, 1888 |
| PspPPI | RGGWCCY | 2 cut(s) | 329, 1246 |
| PspXI | VCTCGAGB | 1 cut(s) | 1800 |
| PstI | CTGCAG | 1 cut(s) | 395 |
| PstNI | CAGNNNCTG | 1 cut(s) | 157 |
| PsuI | RGATCY | 3 cut(s) | 238, 959, 1265 |
| PsyI | GACNNNGTC | 1 cut(s) | 1157 |
| RsaI | GTAC | 4 cut(s) | 434, 1305, 1991, 2452 |
| RsaNI | GTAC | 4 cut(s) | 433, 1304, 1990, 2451 |
| RseI | CAYNNNNRTG | 3 cut(s) | 277, 2331, 2528 |
| SalI | GTCGAC | 1 cut(s) | 58 |
| SatI | GCNGC | 5 cut(s) | 152, 519, 772, 1291, 2000 |
| Sau3AI | GATC | 9 cut(s) | 238, 319, 541, 959, 1022, 1265, 1855, 2110, 2485 |
| Sau96I | GGNCC | 5 cut(s) | 329, 608, 1246, 1499, 1888 |
| SchI | GAGTC | 2 cut(s) | 156, 2391 |
| ScrFI | CCNGG | 6 cut(s) | 230, 344, 957, 2057, 2358, 2597 |
| SduI | GDGCHC | 1 cut(s) | 1588 |
| SfaNI | GCATC | 6 cut(s) | 269, 389, 897, 1081, 1462, 1647 |
| SfcI | CTRYAG | 2 cut(s) | 391, 1255 |
| Sfr274I | CTCGAG | 1 cut(s) | 1800 |
| SinI | GGWCC | 2 cut(s) | 329, 1246 |
| SlaI | CTCGAG | 1 cut(s) | 1800 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 277, 2331, 2528 |
| SmlI | CTYRAG | 4 cut(s) | 827, 1552, 1705, 1800 |
| SmoI | CTYRAG | 4 cut(s) | 827, 1552, 1705, 1800 |
| SpeI | ACTAGT | 1 cut(s) | 293 |
| SsiI | CCGC | 5 cut(s) | 10, 212, 1048, 1192, 1939 |
| SspI | AATATT | 1 cut(s) | 1851 |
| SspMI | CTAG | 7 cut(s) | 120, 294, 485, 863, 1076, 2430, 2576 |
| StyD4I | CCNGG | 6 cut(s) | 228, 342, 955, 2055, 2356, 2595 |
| StyI | CCWWGG | 4 cut(s) | 454, 679, 963, 2481 |
| TaaI | ACNGT | 2 cut(s) | 72, 1569 |
| TaiI | ACGT | 1 cut(s) | 1984 |
| TaqI | TCGA | 2 cut(s) | 59, 1801 |
| TatI | WGTACW | 2 cut(s) | 432, 1989 |
| TfiI | GAWTC | 7 cut(s) | 551, 1358, 1822, 1867, 2201, 2267, 2497 |
| TscAI | CASTG | 4 cut(s) | 901, 1574, 1837, 2425 |
| TseFI | GTSAC | 1 cut(s) | 2236 |
| TseI | GCWGC | 5 cut(s) | 151, 518, 771, 1290, 1999 |
| Tsp45I | GTSAC | 1 cut(s) | 2236 |
| TspDTI | ATGAA | 9 cut(s) | 351, 849, 1014, 1350, 1980, 2169, 2235, 2349, 2512 |
| TspGWI | ACGGA | 1 cut(s) | 2279 |
| TspRI | CASTG | 4 cut(s) | 901, 1574, 1837, 2425 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1157 |
| Vha464I | CTTAAG | 2 cut(s) | 827, 1552 |
| VpaK11BI | GGWCC | 2 cut(s) | 329, 1246 |
| XapI | RAATTY | 6 cut(s) | 641, 762, 866, 1676, 2091, 2543 |
| XbaI | TCTAGA | 2 cut(s) | 862, 2575 |
| XceI | RCATGY | 2 cut(s) | 861, 1928 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 139 |
| XhoI | CTCGAG | 1 cut(s) | 1800 |
| XmiI | GTMKAC | 1 cut(s) | 59 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1677 |
| XspI | CTAG | 7 cut(s) | 120, 294, 485, 863, 1076, 2430, 2576 |