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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 538 |
| AccI | GTMKAC | 1 cut(s) | 642 |
| AclWI | GGATC | 1 cut(s) | 801 |
| AcoI | YGGCCR | 1 cut(s) | 509 |
| AdeI | CACNNNGTG | 1 cut(s) | 721 |
| AfaI | GTAC | 1 cut(s) | 110 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 173, 442, 601 |
| AgeI | ACCGGT | 1 cut(s) | 105 |
| AgsI | TTSAA | 9 cut(s) | 122, 196, 325, 419, 470, 487, 571, 810, 825 |
| AjnI | CCWGG | 3 cut(s) | 154, 616, 725 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 371, 403 |
| AluBI | AGCT | 8 cut(s) | 126, 139, 217, 266, 428, 495, 631, 814 |
| AluI | AGCT | 8 cut(s) | 126, 139, 217, 266, 428, 495, 631, 814 |
| Alw21I | GWGCWC | 1 cut(s) | 141 |
| Alw26I | GTCTC | 1 cut(s) | 555 |
| AlwI | GGATC | 1 cut(s) | 801 |
| AoxI | GGCC | 5 cut(s) | 164, 211, 433, 509, 730 |
| ApaI | GGGCCC | 1 cut(s) | 734 |
| ApeKI | GCWGC | 2 cut(s) | 217, 705 |
| AsiGI | ACCGGT | 1 cut(s) | 105 |
| AspS9I | GGNCC | 3 cut(s) | 211, 730, 731 |
| AsuHPI | GGTGA | 1 cut(s) | 603 |
| BaeGI | GKGCMC | 1 cut(s) | 734 |
| BanII | GRGCYC | 2 cut(s) | 141, 734 |
| BbsI | GAAGAC | 2 cut(s) | 108, 203 |
| Bbv12I | GWGCWC | 1 cut(s) | 141 |
| BbvI | GCAGC | 2 cut(s) | 204, 717 |
| BccI | CCATC | 4 cut(s) | 25, 176, 233, 407 |
| BceAI | ACGGC | 1 cut(s) | 496 |
| BciT130I | CCWGG | 3 cut(s) | 156, 618, 727 |
| BciVI | GTATCC | 1 cut(s) | 35 |
| BcoDI | GTCTC | 1 cut(s) | 555 |
| BfaI | CTAG | 3 cut(s) | 83, 815, 832 |
| BfmI | CTRYAG | 2 cut(s) | 55, 261 |
| BfuAI | ACCTGC | 1 cut(s) | 538 |
| BfuI | GTATCC | 1 cut(s) | 35 |
| BisI | GCNGC | 2 cut(s) | 218, 706 |
| BlsI | GCNGC | 2 cut(s) | 219, 707 |
| Bme1390I | CCNGG | 3 cut(s) | 156, 618, 727 |
| BmgT120I | GGNCC | 3 cut(s) | 211, 730, 731 |
| BmiI | GGNNCC | 3 cut(s) | 731, 732, 733 |
| BmrFI | CCNGG | 3 cut(s) | 156, 618, 727 |
| BmrI | ACTGGG | 1 cut(s) | 798 |
| BmsI | GCATC | 2 cut(s) | 149, 645 |
| BmuI | ACTGGG | 1 cut(s) | 798 |
| BpiI | GAAGAC | 2 cut(s) | 108, 203 |
| BpmI | CTGGAG | 1 cut(s) | 432 |
| Bpu10I | CCTNAGC | 3 cut(s) | 665, 671, 783 |
| BpuEI | CTTGAG | 2 cut(s) | 117, 125 |
| BsaBI | GATNNNNATC | 1 cut(s) | 186 |
| BsaJI | CCNNGG | 4 cut(s) | 154, 436, 512, 726 |
| BsaWI | WCCGGW | 1 cut(s) | 105 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 173, 442, 601 |
| Bse118I | RCCGGY | 1 cut(s) | 105 |
| Bse1I | ACTGG | 2 cut(s) | 545, 804 |
| Bse8I | GATNNNNATC | 1 cut(s) | 186 |
| BseBI | CCWGG | 3 cut(s) | 156, 618, 727 |
| BseDI | CCNNGG | 4 cut(s) | 154, 436, 512, 726 |
| BseGI | GGATG | 4 cut(s) | 36, 72, 164, 798 |
| BseJI | GATNNNNATC | 1 cut(s) | 186 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 173, 442, 601 |
| BseMII | CTCAG | 3 cut(s) | 510, 662, 665 |
| BseNI | ACTGG | 2 cut(s) | 545, 804 |
| BseSI | GKGCMC | 1 cut(s) | 734 |
| BseXI | GCAGC | 2 cut(s) | 204, 717 |
| BseYI | CCCAGC | 3 cut(s) | 659, 686, 755 |
| BsgI | GTGCAG | 1 cut(s) | 724 |
| BshFI | GGCC | 5 cut(s) | 166, 213, 435, 511, 732 |
| BshTI | ACCGGT | 1 cut(s) | 105 |
| BsiHKAI | GWGCWC | 1 cut(s) | 141 |
| BsiSI | CCGG | 1 cut(s) | 106 |
| BslFI | GGGAC | 1 cut(s) | 747 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 173, 442, 601 |
| BsmAI | GTCTC | 1 cut(s) | 555 |
| BsmFI | GGGAC | 1 cut(s) | 747 |
| BsmI | GAATGC | 1 cut(s) | 13 |
| BsnI | GGCC | 5 cut(s) | 166, 213, 435, 511, 732 |
| Bsp120I | GGGCCC | 1 cut(s) | 730 |
| Bsp1286I | GDGCHC | 2 cut(s) | 141, 734 |
| Bsp143I | GATC | 1 cut(s) | 793 |
| Bsp19I | CCATGG | 1 cut(s) | 436 |
| BspANI | GGCC | 5 cut(s) | 166, 213, 435, 511, 732 |
| BspCNI | CTCAG | 3 cut(s) | 509, 663, 664 |
| BspHI | TCATGA | 1 cut(s) | 366 |
| BspLI | GGNNCC | 3 cut(s) | 731, 732, 733 |
| BspMI | ACCTGC | 1 cut(s) | 538 |
| BspPI | GGATC | 1 cut(s) | 801 |
| BsrFI | RCCGGY | 1 cut(s) | 105 |
| BsrI | ACTGG | 2 cut(s) | 545, 804 |
| BssAI | RCCGGY | 1 cut(s) | 105 |
| BssECI | CCNNGG | 4 cut(s) | 154, 436, 512, 726 |
| BssMI | GATC | 1 cut(s) | 793 |
| BssT1I | CCWWGG | 1 cut(s) | 436 |
| Bst2UI | CCWGG | 3 cut(s) | 156, 618, 727 |
| Bst4CI | ACNGT | 1 cut(s) | 202 |
| BstC8I | GCNNGC | 3 cut(s) | 164, 215, 692 |
| BstDEI | CTNAG | 5 cut(s) | 496, 651, 665, 671, 783 |
| BstDSI | CCRYGG | 2 cut(s) | 436, 512 |
| BstF5I | GGATG | 4 cut(s) | 36, 72, 164, 798 |
| BstKTI | GATC | 1 cut(s) | 796 |
| BstMAI | GTCTC | 1 cut(s) | 555 |
| BstMBI | GATC | 1 cut(s) | 793 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 687 |
| BstNI | CCWGG | 3 cut(s) | 156, 618, 727 |
| BstSCI | CCNGG | 3 cut(s) | 154, 616, 725 |
| BstSFI | CTRYAG | 2 cut(s) | 55, 261 |
| BstSLI | GKGCMC | 1 cut(s) | 734 |
| BstV1I | GCAGC | 2 cut(s) | 204, 717 |
| BstV2I | GAAGAC | 2 cut(s) | 108, 203 |
| BstX2I | RGATCY | 1 cut(s) | 793 |
| BstYI | RGATCY | 1 cut(s) | 793 |
| BsuI | GTATCC | 1 cut(s) | 35 |
| BsuRI | GGCC | 5 cut(s) | 166, 213, 435, 511, 732 |
| BtgI | CCRYGG | 2 cut(s) | 436, 512 |
| BtsCI | GGATG | 4 cut(s) | 36, 72, 164, 798 |
| BtsIMutI | CAGTG | 1 cut(s) | 538 |
| BveI | ACCTGC | 1 cut(s) | 538 |
| Cac8I | GCNNGC | 3 cut(s) | 164, 215, 692 |
| CciI | TCATGA | 1 cut(s) | 366 |
| Cfr10I | RCCGGY | 1 cut(s) | 105 |
| Cfr13I | GGNCC | 3 cut(s) | 211, 730, 731 |
| Csp6I | GTAC | 1 cut(s) | 109 |
| CspAI | ACCGGT | 1 cut(s) | 105 |
| CviAII | CATG | 5 cut(s) | 306, 367, 437, 507, 520 |
| CviQI | GTAC | 1 cut(s) | 109 |
| DdeI | CTNAG | 5 cut(s) | 496, 651, 665, 671, 783 |
| DpnI | GATC | 1 cut(s) | 795 |
| DpnII | GATC | 1 cut(s) | 793 |
| DraIII | CACNNNGTG | 1 cut(s) | 721 |
| EaeI | YGGCCR | 1 cut(s) | 509 |
| Ecl136II | GAGCTC | 1 cut(s) | 139 |
| Eco130I | CCWWGG | 1 cut(s) | 436 |
| Eco24I | GRGCYC | 2 cut(s) | 141, 734 |
| Eco53kI | GAGCTC | 1 cut(s) | 139 |
| EcoICRI | GAGCTC | 1 cut(s) | 139 |
| EcoO109I | RGGNCCY | 2 cut(s) | 730, 731 |
| EcoRII | CCWGG | 3 cut(s) | 154, 616, 725 |
| EcoT14I | CCWWGG | 1 cut(s) | 436 |
| EcoT22I | ATGCAT | 1 cut(s) | 508 |
| EcoT38I | GRGCYC | 2 cut(s) | 141, 734 |
| ErhI | CCWWGG | 1 cut(s) | 436 |
| FaeI | CATG | 5 cut(s) | 309, 370, 440, 510, 523 |
| FaqI | GGGAC | 1 cut(s) | 747 |
| FatI | CATG | 5 cut(s) | 305, 366, 436, 506, 519 |
| FauNDI | CATATG | 2 cut(s) | 97, 677 |
| FblI | GTMKAC | 1 cut(s) | 642 |
| Fnu4HI | GCNGC | 2 cut(s) | 218, 706 |
| FokI | GGATG | 4 cut(s) | 43, 79, 171, 785 |
| FriOI | GRGCYC | 2 cut(s) | 141, 734 |
| Fsp4HI | GCNGC | 2 cut(s) | 218, 706 |
| FspBI | CTAG | 3 cut(s) | 83, 815, 832 |
| GluI | GCNGC | 2 cut(s) | 218, 706 |
| GsaI | CCCAGC | 3 cut(s) | 663, 690, 759 |
| GsuI | CTGGAG | 1 cut(s) | 432 |
| HaeIII | GGCC | 5 cut(s) | 166, 213, 435, 511, 732 |
| HapII | CCGG | 1 cut(s) | 106 |
| Hin1II | CATG | 5 cut(s) | 309, 370, 440, 510, 523 |
| HindIII | AAGCTT | 1 cut(s) | 426 |
| HpaII | CCGG | 1 cut(s) | 106 |
| HphI | GGTGA | 1 cut(s) | 603 |
| Hpy166II | GTNNAC | 3 cut(s) | 205, 353, 643 |
| Hpy188I | TCNGA | 1 cut(s) | 654 |
| Hpy188III | TCNNGA | 5 cut(s) | 28, 134, 142, 314, 367 |
| Hpy8I | GTNNAC | 3 cut(s) | 205, 353, 643 |
| HpyAV | CCTTC | 3 cut(s) | 319, 593, 692 |
| HpyCH4III | ACNGT | 1 cut(s) | 202 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 162, 506, 519, 533, 705 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 687 |
| HpyF3I | CTNAG | 5 cut(s) | 496, 651, 665, 671, 783 |
| Hsp92II | CATG | 5 cut(s) | 309, 370, 440, 510, 523 |
| Kzo9I | GATC | 1 cut(s) | 793 |
| Lsp1109I | GCAGC | 2 cut(s) | 204, 717 |
| LweI | GCATC | 2 cut(s) | 149, 645 |
| MaeI | CTAG | 3 cut(s) | 83, 815, 832 |
| MaeIII | GTNAC | 2 cut(s) | 371, 721 |
| MalI | GATC | 1 cut(s) | 795 |
| MboI | GATC | 1 cut(s) | 793 |
| MboII | GAAGA | 5 cut(s) | 113, 208, 391, 491, 499 |
| MflI | RGATCY | 1 cut(s) | 793 |
| MhlI | GDGCHC | 2 cut(s) | 141, 734 |
| MluCI | AATT | 2 cut(s) | 112, 534 |
| MmeI | TCCRAC | 1 cut(s) | 19 |
| MnlI | CCTC | 5 cut(s) | 400, 595, 624, 784, 812 |
| Mph1103I | ATGCAT | 1 cut(s) | 508 |
| MseI | TTAA | 2 cut(s) | 15, 501 |
| MslI | CAYNNNNRTG | 3 cut(s) | 348, 365, 511 |
| MspA1I | CMGCKG | 1 cut(s) | 217 |
| MspI | CCGG | 1 cut(s) | 106 |
| MspR9I | CCNGG | 3 cut(s) | 156, 618, 727 |
| Mva1269I | GAATGC | 1 cut(s) | 13 |
| MvaI | CCWGG | 3 cut(s) | 156, 618, 727 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 687 |
| NcoI | CCATGG | 1 cut(s) | 436 |
| NdeI | CATATG | 2 cut(s) | 97, 677 |
| NdeII | GATC | 1 cut(s) | 793 |
| NlaIII | CATG | 5 cut(s) | 309, 370, 440, 510, 523 |
| NlaIV | GGNNCC | 3 cut(s) | 731, 732, 733 |
| NmuCI | GTSAC | 2 cut(s) | 371, 721 |
| NsiI | ATGCAT | 1 cut(s) | 508 |
| PagI | TCATGA | 1 cut(s) | 366 |
| PctI | GAATGC | 1 cut(s) | 13 |
| PfoI | TCCNGGA | 1 cut(s) | 616 |
| PinAI | ACCGGT | 1 cut(s) | 105 |
| PkrI | GCNGC | 2 cut(s) | 219, 707 |
| Psp124BI | GAGCTC | 1 cut(s) | 141 |
| Psp6I | CCWGG | 3 cut(s) | 154, 616, 725 |
| PspFI | CCCAGC | 3 cut(s) | 659, 686, 755 |
| PspGI | CCWGG | 3 cut(s) | 154, 616, 725 |
| PspN4I | GGNNCC | 3 cut(s) | 731, 732, 733 |
| PspOMI | GGGCCC | 1 cut(s) | 730 |
| PspPI | GGNCC | 3 cut(s) | 211, 730, 731 |
| PsuI | RGATCY | 1 cut(s) | 793 |
| PvuII | CAGCTG | 1 cut(s) | 217 |
| RsaI | GTAC | 1 cut(s) | 110 |
| RsaNI | GTAC | 1 cut(s) | 109 |
| RseI | CAYNNNNRTG | 3 cut(s) | 348, 365, 511 |
| SacI | GAGCTC | 1 cut(s) | 141 |
| SaqAI | TTAA | 2 cut(s) | 15, 501 |
| SatI | GCNGC | 2 cut(s) | 218, 706 |
| Sau3AI | GATC | 1 cut(s) | 793 |
| Sau96I | GGNCC | 3 cut(s) | 211, 730, 731 |
| ScrFI | CCNGG | 3 cut(s) | 156, 618, 727 |
| SduI | GDGCHC | 2 cut(s) | 141, 734 |
| SfaNI | GCATC | 2 cut(s) | 149, 645 |
| SfcI | CTRYAG | 2 cut(s) | 55, 261 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 348, 365, 511 |
| SmlI | CTYRAG | 2 cut(s) | 132, 140 |
| SmoI | CTYRAG | 2 cut(s) | 132, 140 |
| Sse9I | AATT | 2 cut(s) | 112, 534 |
| SspMI | CTAG | 3 cut(s) | 83, 815, 832 |
| SstI | GAGCTC | 1 cut(s) | 141 |
| StyD4I | CCNGG | 3 cut(s) | 154, 616, 725 |
| StyI | CCWWGG | 1 cut(s) | 436 |
| TaaI | ACNGT | 1 cut(s) | 202 |
| TaqI | TCGA | 1 cut(s) | 279 |
| TasI | AATT | 2 cut(s) | 112, 534 |
| Tru1I | TTAA | 2 cut(s) | 15, 501 |
| Tru9I | TTAA | 2 cut(s) | 15, 501 |
| TscAI | CASTG | 1 cut(s) | 545 |
| TseFI | GTSAC | 2 cut(s) | 371, 721 |
| TseI | GCWGC | 2 cut(s) | 217, 705 |
| Tsp45I | GTSAC | 2 cut(s) | 371, 721 |
| TspDTI | ATGAA | 5 cut(s) | 83, 114, 160, 355, 454 |
| TspRI | CASTG | 1 cut(s) | 545 |
| XmiI | GTMKAC | 1 cut(s) | 642 |
| XspI | CTAG | 3 cut(s) | 83, 815, 832 |
| Zsp2I | ATGCAT | 1 cut(s) | 508 |