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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 269 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 677 |
| AciI | CCGC | 3 cut(s) | 9, 69, 107 |
| AcoI | YGGCCR | 3 cut(s) | 10, 108, 650 |
| AcsI | RAATTY | 2 cut(s) | 132, 374 |
| AcuI | CTGAAG | 1 cut(s) | 465 |
| AfaI | GTAC | 3 cut(s) | 332, 381, 410 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 26, 40, 75, 96, 103, 110, 677 |
| AgsI | TTSAA | 1 cut(s) | 464 |
| AjnI | CCWGG | 2 cut(s) | 264, 307 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 567, 599 |
| AluBI | AGCT | 1 cut(s) | 755 |
| AluI | AGCT | 1 cut(s) | 755 |
| ApaI | GGGCCC | 1 cut(s) | 769 |
| ApoI | RAATTY | 2 cut(s) | 132, 374 |
| AsuHPI | GGTGA | 3 cut(s) | 41, 128, 578 |
| AvaII | GGWCC | 1 cut(s) | 281 |
| BaeGI | GKGCMC | 1 cut(s) | 769 |
| BanII | GRGCYC | 2 cut(s) | 259, 769 |
| BbsI | GAAGAC | 1 cut(s) | 866 |
| BccI | CCATC | 6 cut(s) | 203, 314, 467, 557, 614, 821 |
| BciT130I | CCWGG | 2 cut(s) | 266, 309 |
| BfaI | CTAG | 3 cut(s) | 240, 698, 729 |
| BfmI | CTRYAG | 1 cut(s) | 834 |
| BfuAI | ACCTGC | 1 cut(s) | 269 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 649, 694, 721 |
| BisI | GCNGC | 2 cut(s) | 10, 108 |
| BlsI | GCNGC | 2 cut(s) | 11, 109 |
| Bme1390I | CCNGG | 2 cut(s) | 266, 309 |
| Bme18I | GGWCC | 1 cut(s) | 281 |
| BmiI | GGNNCC | 2 cut(s) | 306, 767 |
| BmrFI | CCNGG | 2 cut(s) | 266, 309 |
| BmrI | ACTGGG | 5 cut(s) | 648, 675, 720, 729, 747 |
| BmsI | GCATC | 4 cut(s) | 208, 346, 387, 559 |
| BmuI | ACTGGG | 5 cut(s) | 648, 675, 720, 729, 747 |
| BpiI | GAAGAC | 1 cut(s) | 866 |
| BsaJI | CCNNGG | 3 cut(s) | 139, 265, 769 |
| BsaWI | WCCGGW | 3 cut(s) | 33, 75, 96 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 443, 473 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 26, 40, 75, 96, 103, 110, 677 |
| Bse1I | ACTGG | 6 cut(s) | 595, 643, 670, 715, 724, 742 |
| BseBI | CCWGG | 2 cut(s) | 266, 309 |
| BseDI | CCNNGG | 3 cut(s) | 139, 265, 769 |
| BseGI | GGATG | 5 cut(s) | 199, 214, 361, 478, 586 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 26, 40, 75, 96, 103, 110, 677 |
| BseNI | ACTGG | 6 cut(s) | 595, 643, 670, 715, 724, 742 |
| BseRI | GAGGAG | 1 cut(s) | 464 |
| BseSI | GKGCMC | 1 cut(s) | 769 |
| BseX3I | CGGCCG | 2 cut(s) | 10, 108 |
| Bsh1285I | CGRYCG | 2 cut(s) | 13, 111 |
| BsiEI | CGRYCG | 2 cut(s) | 13, 111 |
| BsiSI | CCGG | 8 cut(s) | 13, 34, 41, 62, 76, 97, 104, 111 |
| BslFI | GGGAC | 1 cut(s) | 601 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 26, 40, 75, 96, 103, 110, 677 |
| BsmFI | GGGAC | 1 cut(s) | 601 |
| Bsp120I | GGGCCC | 1 cut(s) | 765 |
| Bsp1286I | GDGCHC | 2 cut(s) | 259, 769 |
| Bsp1407I | TGTACA | 1 cut(s) | 408 |
| Bsp143I | GATC | 1 cut(s) | 503 |
| Bsp19I | CCATGG | 2 cut(s) | 139, 769 |
| BspACI | CCGC | 3 cut(s) | 9, 69, 107 |
| BspHI | TCATGA | 1 cut(s) | 259 |
| BspLI | GGNNCC | 2 cut(s) | 306, 767 |
| BspMI | ACCTGC | 1 cut(s) | 269 |
| BspQI | GCTCTTC | 1 cut(s) | 516 |
| BsrGI | TGTACA | 1 cut(s) | 408 |
| BsrI | ACTGG | 6 cut(s) | 595, 643, 670, 715, 724, 742 |
| BssECI | CCNNGG | 3 cut(s) | 139, 265, 769 |
| BssMI | GATC | 1 cut(s) | 503 |
| BssT1I | CCWWGG | 2 cut(s) | 139, 769 |
| Bst2UI | CCWGG | 2 cut(s) | 266, 309 |
| Bst4CI | ACNGT | 2 cut(s) | 533, 838 |
| Bst6I | CTCTTC | 3 cut(s) | 441, 516, 800 |
| BstAUI | TGTACA | 1 cut(s) | 408 |
| BstDEI | CTNAG | 2 cut(s) | 801, 864 |
| BstDSI | CCRYGG | 2 cut(s) | 139, 769 |
| BstEII | GGTNACC | 1 cut(s) | 29 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 24 |
| BstF5I | GGATG | 5 cut(s) | 199, 214, 361, 478, 586 |
| BstKTI | GATC | 1 cut(s) | 506 |
| BstMBI | GATC | 1 cut(s) | 503 |
| BstMCI | CGRYCG | 2 cut(s) | 13, 111 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 649, 694, 721 |
| BstNI | CCWGG | 2 cut(s) | 266, 309 |
| BstPI | GGTNACC | 1 cut(s) | 29 |
| BstSCI | CCNGG | 2 cut(s) | 264, 307 |
| BstSFI | CTRYAG | 1 cut(s) | 834 |
| BstSLI | GKGCMC | 1 cut(s) | 769 |
| BstV2I | GAAGAC | 1 cut(s) | 866 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 400 |
| BstZI | CGGCCG | 2 cut(s) | 10, 108 |
| BtgI | CCRYGG | 2 cut(s) | 139, 769 |
| BtsCI | GGATG | 5 cut(s) | 199, 214, 361, 478, 586 |
| BtsI | GCAGTG | 2 cut(s) | 319, 858 |
| BtsIMutI | CAGTG | 3 cut(s) | 319, 791, 858 |
| BveI | ACCTGC | 1 cut(s) | 269 |
| CciI | TCATGA | 1 cut(s) | 259 |
| Csp6I | GTAC | 3 cut(s) | 331, 380, 409 |
| CviAII | CATG | 6 cut(s) | 127, 140, 260, 327, 527, 770 |
| CviQI | GTAC | 3 cut(s) | 331, 380, 409 |
| DdeI | CTNAG | 2 cut(s) | 801, 864 |
| DpnI | GATC | 1 cut(s) | 505 |
| DpnII | GATC | 1 cut(s) | 503 |
| EaeI | YGGCCR | 3 cut(s) | 10, 108, 650 |
| EagI | CGGCCG | 2 cut(s) | 10, 108 |
| Eam1104I | CTCTTC | 3 cut(s) | 441, 516, 800 |
| EarI | CTCTTC | 3 cut(s) | 441, 516, 800 |
| EclXI | CGGCCG | 2 cut(s) | 10, 108 |
| Eco130I | CCWWGG | 2 cut(s) | 139, 769 |
| Eco147I | AGGCCT | 1 cut(s) | 832 |
| Eco24I | GRGCYC | 2 cut(s) | 259, 769 |
| Eco47I | GGWCC | 1 cut(s) | 281 |
| Eco52I | CGGCCG | 2 cut(s) | 10, 108 |
| Eco57I | CTGAAG | 1 cut(s) | 465 |
| Eco91I | GGTNACC | 1 cut(s) | 29 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 24 |
| EcoO109I | RGGNCCY | 1 cut(s) | 765 |
| EcoO65I | GGTNACC | 1 cut(s) | 29 |
| EcoRII | CCWGG | 2 cut(s) | 264, 307 |
| EcoT14I | CCWWGG | 2 cut(s) | 139, 769 |
| EcoT38I | GRGCYC | 2 cut(s) | 259, 769 |
| ErhI | CCWWGG | 2 cut(s) | 139, 769 |
| FaeI | CATG | 6 cut(s) | 130, 143, 263, 330, 530, 773 |
| FaqI | GGGAC | 1 cut(s) | 601 |
| FatI | CATG | 6 cut(s) | 126, 139, 259, 326, 526, 769 |
| Fnu4HI | GCNGC | 2 cut(s) | 10, 108 |
| FokI | GGATG | 5 cut(s) | 206, 221, 368, 485, 593 |
| FriOI | GRGCYC | 2 cut(s) | 259, 769 |
| Fsp4HI | GCNGC | 2 cut(s) | 10, 108 |
| FspBI | CTAG | 3 cut(s) | 240, 698, 729 |
| GluI | GCNGC | 2 cut(s) | 10, 108 |
| HapII | CCGG | 8 cut(s) | 13, 34, 41, 62, 76, 97, 104, 111 |
| Hin1II | CATG | 6 cut(s) | 130, 143, 263, 330, 530, 773 |
| HinfI | GANTC | 6 cut(s) | 16, 37, 58, 79, 100, 539 |
| HpaII | CCGG | 8 cut(s) | 13, 34, 41, 62, 76, 97, 104, 111 |
| HphI | GGTGA | 3 cut(s) | 41, 128, 578 |
| Hpy166II | GTNNAC | 2 cut(s) | 123, 441 |
| Hpy188I | TCNGA | 2 cut(s) | 162, 544 |
| Hpy188III | TCNNGA | 1 cut(s) | 260 |
| Hpy8I | GTNNAC | 2 cut(s) | 123, 441 |
| HpyAV | CCTTC | 2 cut(s) | 157, 427 |
| HpyCH4III | ACNGT | 2 cut(s) | 533, 838 |
| HpyCH4V | TGCA | 5 cut(s) | 23, 359, 372, 572, 782 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 649, 694, 721 |
| HpyF3I | CTNAG | 2 cut(s) | 801, 864 |
| Hsp92II | CATG | 6 cut(s) | 130, 143, 263, 330, 530, 773 |
| Kzo9I | GATC | 1 cut(s) | 503 |
| LguI | GCTCTTC | 1 cut(s) | 516 |
| LweI | GCATC | 4 cut(s) | 208, 346, 387, 559 |
| MaeI | CTAG | 3 cut(s) | 240, 698, 729 |
| MaeIII | GTNAC | 3 cut(s) | 29, 92, 787 |
| MalI | GATC | 1 cut(s) | 505 |
| MboI | GATC | 1 cut(s) | 503 |
| MfeI | CAATTG | 3 cut(s) | 339, 360, 690 |
| MhlI | GDGCHC | 2 cut(s) | 259, 769 |
| MluCI | AATT | 6 cut(s) | 132, 247, 339, 360, 374, 690 |
| MlyI | GAGTC | 1 cut(s) | 548 |
| MmeI | TCCRAC | 1 cut(s) | 140 |
| MnlI | CCTC | 8 cut(s) | 137, 179, 184, 393, 442, 544, 756, 801 |
| MseI | TTAA | 3 cut(s) | 245, 422, 555 |
| MspI | CCGG | 8 cut(s) | 13, 34, 41, 62, 76, 97, 104, 111 |
| MspR9I | CCNGG | 2 cut(s) | 266, 309 |
| MunI | CAATTG | 3 cut(s) | 339, 360, 690 |
| MvaI | CCWGG | 2 cut(s) | 266, 309 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 649, 694, 721 |
| NcoI | CCATGG | 2 cut(s) | 139, 769 |
| NdeII | GATC | 1 cut(s) | 503 |
| NlaIII | CATG | 6 cut(s) | 130, 143, 263, 330, 530, 773 |
| NlaIV | GGNNCC | 2 cut(s) | 306, 767 |
| NmeAIII | GCCGAG | 1 cut(s) | 628 |
| NmuCI | GTSAC | 3 cut(s) | 29, 92, 787 |
| PagI | TCATGA | 1 cut(s) | 259 |
| PceI | AGGCCT | 1 cut(s) | 832 |
| PciSI | GCTCTTC | 1 cut(s) | 516 |
| PfeI | GAWTC | 5 cut(s) | 16, 37, 58, 79, 100 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 677 |
| PkrI | GCNGC | 2 cut(s) | 11, 109 |
| PleI | GAGTC | 1 cut(s) | 547 |
| PpsI | GAGTC | 1 cut(s) | 547 |
| Psp6I | CCWGG | 2 cut(s) | 264, 307 |
| PspEI | GGTNACC | 1 cut(s) | 29 |
| PspGI | CCWGG | 2 cut(s) | 264, 307 |
| PspN4I | GGNNCC | 2 cut(s) | 306, 767 |
| PspOMI | GGGCCC | 1 cut(s) | 765 |
| RsaI | GTAC | 3 cut(s) | 332, 381, 410 |
| RsaNI | GTAC | 3 cut(s) | 331, 380, 409 |
| SapI | GCTCTTC | 1 cut(s) | 516 |
| SaqAI | TTAA | 3 cut(s) | 245, 422, 555 |
| SatI | GCNGC | 2 cut(s) | 10, 108 |
| Sau3AI | GATC | 1 cut(s) | 503 |
| SchI | GAGTC | 1 cut(s) | 548 |
| ScrFI | CCNGG | 2 cut(s) | 266, 309 |
| SduI | GDGCHC | 2 cut(s) | 259, 769 |
| SfaNI | GCATC | 4 cut(s) | 208, 346, 387, 559 |
| SfcI | CTRYAG | 1 cut(s) | 834 |
| SfiI | GGCCNNNNNGGCC | 2 cut(s) | 649, 721 |
| SinI | GGWCC | 1 cut(s) | 281 |
| Sse9I | AATT | 6 cut(s) | 132, 247, 339, 360, 374, 690 |
| SseBI | AGGCCT | 1 cut(s) | 832 |
| SsiI | CCGC | 3 cut(s) | 9, 69, 107 |
| SspMI | CTAG | 3 cut(s) | 240, 698, 729 |
| StuI | AGGCCT | 1 cut(s) | 832 |
| StyD4I | CCNGG | 2 cut(s) | 264, 307 |
| StyI | CCWWGG | 2 cut(s) | 139, 769 |
| TaaI | ACNGT | 2 cut(s) | 533, 838 |
| TaqI | TCGA | 3 cut(s) | 749, 816, 840 |
| TasI | AATT | 6 cut(s) | 132, 247, 339, 360, 374, 690 |
| TatI | WGTACW | 1 cut(s) | 408 |
| TauI | GCSGC | 2 cut(s) | 12, 110 |
| TfiI | GAWTC | 5 cut(s) | 16, 37, 58, 79, 100 |
| Tru1I | TTAA | 3 cut(s) | 245, 422, 555 |
| Tru9I | TTAA | 3 cut(s) | 245, 422, 555 |
| TscAI | CASTG | 3 cut(s) | 319, 798, 858 |
| TseFI | GTSAC | 3 cut(s) | 29, 92, 787 |
| Tsp45I | GTSAC | 3 cut(s) | 29, 92, 787 |
| TspDTI | ATGAA | 2 cut(s) | 143, 531 |
| TspRI | CASTG | 3 cut(s) | 319, 798, 858 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 677 |
| VpaK11BI | GGWCC | 1 cut(s) | 281 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 24 |
| XapI | RAATTY | 2 cut(s) | 132, 374 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 291 |
| XspI | CTAG | 3 cut(s) | 240, 698, 729 |