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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 887 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 782 |
| AccIII | TCCGGA | 1 cut(s) | 454 |
| AciI | CCGC | 2 cut(s) | 833, 902 |
| AclWI | GGATC | 5 cut(s) | 393, 446, 815, 1542, 1686 |
| AcoI | YGGCCR | 2 cut(s) | 1846, 1855 |
| AcsI | RAATTY | 5 cut(s) | 85, 361, 406, 553, 1826 |
| AcuI | CTGAAG | 2 cut(s) | 63, 166 |
| AdeI | CACNNNGTG | 1 cut(s) | 1049 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 156, 746, 782 |
| AflII | CTTAAG | 1 cut(s) | 1637 |
| AflIII | ACRYGT | 1 cut(s) | 1871 |
| AjnI | CCWGG | 3 cut(s) | 469, 628, 781 |
| Alw26I | GTCTC | 1 cut(s) | 2094 |
| AlwI | GGATC | 5 cut(s) | 393, 446, 815, 1542, 1686 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 470 |
| Aor13HI | TCCGGA | 1 cut(s) | 454 |
| AoxI | GGCC | 7 cut(s) | 267, 737, 1051, 1742, 1846, 1855, 2108 |
| ApeKI | GCWGC | 7 cut(s) | 297, 482, 592, 1082, 1784, 1836, 1921 |
| ApoI | RAATTY | 5 cut(s) | 85, 361, 406, 553, 1826 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 706, 738 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 96 |
| AspS9I | GGNCC | 4 cut(s) | 738, 773, 1379, 1697 |
| AsuHPI | GGTGA | 7 cut(s) | 139, 327, 677, 989, 1339, 1694, 1784 |
| AvaII | GGWCC | 3 cut(s) | 773, 1379, 1697 |
| BalI | TGGCCA | 2 cut(s) | 1848, 1857 |
| BanII | GRGCYC | 1 cut(s) | 1548 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 667, 699 |
| BbvI | GCAGC | 7 cut(s) | 284, 469, 579, 1094, 1771, 1848, 1933 |
| BccI | CCATC | 7 cut(s) | 652, 656, 749, 806, 1327, 1524, 2119 |
| BceAI | ACGGC | 1 cut(s) | 254 |
| BciT130I | CCWGG | 3 cut(s) | 471, 630, 783 |
| BclI | TGATCA | 1 cut(s) | 667 |
| BcoDI | GTCTC | 1 cut(s) | 2094 |
| BfaI | CTAG | 5 cut(s) | 1086, 1671, 1761, 1781, 1979 |
| BfmI | CTRYAG | 1 cut(s) | 1176 |
| BfrI | CTTAAG | 1 cut(s) | 1637 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1854 |
| BglII | AGATCT | 2 cut(s) | 94, 1498 |
| BisI | GCNGC | 7 cut(s) | 298, 483, 593, 1083, 1785, 1837, 1922 |
| BlpI | GCTNAGC | 1 cut(s) | 1688 |
| BlsI | GCNGC | 7 cut(s) | 299, 484, 594, 1084, 1786, 1838, 1923 |
| Bme1390I | CCNGG | 3 cut(s) | 471, 630, 783 |
| Bme18I | GGWCC | 3 cut(s) | 773, 1379, 1697 |
| BmgT120I | GGNCC | 4 cut(s) | 738, 773, 1379, 1697 |
| BmiI | GGNNCC | 3 cut(s) | 510, 774, 1547 |
| BmrFI | CCNGG | 3 cut(s) | 471, 630, 783 |
| BmrI | ACTGGG | 2 cut(s) | 1204, 1746 |
| BmsI | GCATC | 2 cut(s) | 1069, 2033 |
| BmuI | ACTGGG | 2 cut(s) | 1204, 1746 |
| BpmI | CTGGAG | 4 cut(s) | 1436, 1932, 1992, 2076 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1688 |
| BpuEI | CTTGAG | 2 cut(s) | 1322, 2001 |
| Bsa29I | ATCGAT | 1 cut(s) | 810 |
| BsaBI | GATNNNNATC | 2 cut(s) | 135, 666 |
| BsaJI | CCNNGG | 3 cut(s) | 973, 1103, 1382 |
| BsaWI | WCCGGW | 1 cut(s) | 454 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 359, 389 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 156, 746, 782 |
| Bse1I | ACTGG | 4 cut(s) | 721, 1210, 1699, 1741 |
| Bse3DI | GCAATG | 1 cut(s) | 1118 |
| Bse8I | GATNNNNATC | 2 cut(s) | 135, 666 |
| BseAI | TCCGGA | 1 cut(s) | 454 |
| BseBI | CCWGG | 3 cut(s) | 471, 630, 783 |
| BseCI | ATCGAT | 1 cut(s) | 810 |
| BseDI | CCNNGG | 3 cut(s) | 973, 1103, 1382 |
| BseGI | GGATG | 7 cut(s) | 667, 760, 778, 1084, 1134, 1338, 2054 |
| BseJI | GATNNNNATC | 2 cut(s) | 135, 666 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 156, 746, 782 |
| BseMI | GCAATG | 1 cut(s) | 1118 |
| BseMII | CTCAG | 1 cut(s) | 645 |
| BseNI | ACTGG | 4 cut(s) | 721, 1210, 1699, 1741 |
| BseRI | GAGGAG | 4 cut(s) | 23, 208, 1707, 1920 |
| BseXI | GCAGC | 7 cut(s) | 284, 469, 579, 1094, 1771, 1848, 1933 |
| BseYI | CCCAGC | 1 cut(s) | 2058 |
| BsgI | GTGCAG | 1 cut(s) | 578 |
| BshFI | GGCC | 7 cut(s) | 269, 739, 1053, 1744, 1848, 1857, 2110 |
| BshVI | ATCGAT | 1 cut(s) | 810 |
| BsiSI | CCGG | 1 cut(s) | 455 |
| BslFI | GGGAC | 2 cut(s) | 786, 1292 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 156, 746, 782 |
| BsmAI | GTCTC | 1 cut(s) | 2094 |
| BsmFI | GGGAC | 2 cut(s) | 786, 1292 |
| BsmI | GAATGC | 1 cut(s) | 1572 |
| BsnI | GGCC | 7 cut(s) | 269, 739, 1053, 1744, 1848, 1857, 2110 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1548 |
| Bsp13I | TCCGGA | 1 cut(s) | 454 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1688 |
| BspACI | CCGC | 2 cut(s) | 833, 902 |
| BspANI | GGCC | 7 cut(s) | 269, 739, 1053, 1744, 1848, 1857, 2110 |
| BspCNI | CTCAG | 1 cut(s) | 646 |
| BspDI | ATCGAT | 1 cut(s) | 810 |
| BspEI | TCCGGA | 1 cut(s) | 454 |
| BspHI | TCATGA | 1 cut(s) | 1819 |
| BspLI | GGNNCC | 3 cut(s) | 510, 774, 1547 |
| BspMAI | CTGCAG | 1 cut(s) | 1180 |
| BspPI | GGATC | 5 cut(s) | 393, 446, 815, 1542, 1686 |
| BspQI | GCTCTTC | 1 cut(s) | 30 |
| BspTI | CTTAAG | 1 cut(s) | 1637 |
| BsrDI | GCAATG | 1 cut(s) | 1118 |
| BsrI | ACTGG | 4 cut(s) | 721, 1210, 1699, 1741 |
| BssECI | CCNNGG | 3 cut(s) | 973, 1103, 1382 |
| BssT1I | CCWWGG | 3 cut(s) | 973, 1103, 1382 |
| Bst2UI | CCWGG | 3 cut(s) | 471, 630, 783 |
| Bst4CI | ACNGT | 5 cut(s) | 116, 256, 605, 640, 799 |
| Bst6I | CTCTTC | 2 cut(s) | 30, 611 |
| BstAFI | CTTAAG | 1 cut(s) | 1637 |
| BstC8I | GCNNGC | 5 cut(s) | 236, 709, 837, 1855, 2064 |
| BstDEI | CTNAG | 6 cut(s) | 537, 654, 907, 1577, 1688, 1809 |
| BstF5I | GGATG | 7 cut(s) | 667, 760, 778, 1084, 1134, 1338, 2054 |
| BstMAI | GTCTC | 1 cut(s) | 2094 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 294, 517, 908, 1088, 1483, 1845, 1854 |
| BstNI | CCWGG | 3 cut(s) | 471, 630, 783 |
| BstNSI | RCATGY | 6 cut(s) | 238, 711, 1376, 1518, 1562, 1875 |
| BstSCI | CCNGG | 3 cut(s) | 469, 628, 781 |
| BstSFI | CTRYAG | 1 cut(s) | 1176 |
| BstV1I | GCAGC | 7 cut(s) | 284, 469, 579, 1094, 1771, 1848, 1933 |
| BstX2I | RGATCY | 3 cut(s) | 94, 1498, 1534 |
| BstYI | RGATCY | 3 cut(s) | 94, 1498, 1534 |
| Bsu15I | ATCGAT | 1 cut(s) | 810 |
| BsuRI | GGCC | 7 cut(s) | 269, 739, 1053, 1744, 1848, 1857, 2110 |
| BsuTUI | ATCGAT | 1 cut(s) | 810 |
| BtsCI | GGATG | 7 cut(s) | 667, 760, 778, 1084, 1134, 1338, 2054 |
| BtsIMutI | CAGTG | 3 cut(s) | 121, 1688, 1692 |
| Cac8I | GCNNGC | 5 cut(s) | 236, 709, 837, 1855, 2064 |
| CaiI | CAGNNNCTG | 1 cut(s) | 470 |
| CciI | TCATGA | 1 cut(s) | 1819 |
| Cfr13I | GGNCC | 4 cut(s) | 738, 773, 1379, 1697 |
| ClaI | ATCGAT | 1 cut(s) | 810 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1055, 1090 |
| DdeI | CTNAG | 6 cut(s) | 537, 654, 907, 1577, 1688, 1809 |
| DraI | TTTAAA | 2 cut(s) | 262, 558 |
| DraIII | CACNNNGTG | 1 cut(s) | 1049 |
| EaeI | YGGCCR | 2 cut(s) | 1846, 1855 |
| Eam1104I | CTCTTC | 2 cut(s) | 30, 611 |
| EarI | CTCTTC | 2 cut(s) | 30, 611 |
| Eco130I | CCWWGG | 3 cut(s) | 973, 1103, 1382 |
| Eco24I | GRGCYC | 1 cut(s) | 1548 |
| Eco47I | GGWCC | 3 cut(s) | 773, 1379, 1697 |
| Eco57I | CTGAAG | 2 cut(s) | 63, 166 |
| EcoRI | GAATTC | 2 cut(s) | 85, 406 |
| EcoRII | CCWGG | 3 cut(s) | 469, 628, 781 |
| EcoT14I | CCWWGG | 3 cut(s) | 973, 1103, 1382 |
| EcoT22I | ATGCAT | 1 cut(s) | 1479 |
| EcoT38I | GRGCYC | 1 cut(s) | 1548 |
| ErhI | CCWWGG | 3 cut(s) | 973, 1103, 1382 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1615, 1647, 1620, 1652 |
| FaqI | GGGAC | 2 cut(s) | 786, 1292 |
| FauI | CCCGC | 1 cut(s) | 840 |
| FauNDI | CATATG | 2 cut(s) | 1119, 1603 |
| FbaI | TGATCA | 1 cut(s) | 667 |
| Fnu4HI | GCNGC | 7 cut(s) | 298, 483, 593, 1083, 1785, 1837, 1922 |
| FokI | GGATG | 7 cut(s) | 674, 765, 767, 1091, 1141, 1345, 2041 |
| FriOI | GRGCYC | 1 cut(s) | 1548 |
| Fsp4HI | GCNGC | 7 cut(s) | 298, 483, 593, 1083, 1785, 1837, 1922 |
| FspBI | CTAG | 5 cut(s) | 1086, 1671, 1761, 1781, 1979 |
| GluI | GCNGC | 7 cut(s) | 298, 483, 593, 1083, 1785, 1837, 1922 |
| GsaI | CCCAGC | 1 cut(s) | 2062 |
| GsuI | CTGGAG | 4 cut(s) | 1436, 1932, 1992, 2076 |
| HaeIII | GGCC | 7 cut(s) | 269, 739, 1053, 1744, 1848, 1857, 2110 |
| HapII | CCGG | 1 cut(s) | 455 |
| HincII | GTYRAC | 1 cut(s) | 1892 |
| HindII | GTYRAC | 1 cut(s) | 1892 |
| HindIII | AAGCTT | 1 cut(s) | 1629 |
| HinfI | GANTC | 2 cut(s) | 136, 332 |
| HpaII | CCGG | 1 cut(s) | 455 |
| HphI | GGTGA | 7 cut(s) | 139, 327, 677, 989, 1339, 1694, 1784 |
| Hpy166II | GTNNAC | 2 cut(s) | 1556, 1892 |
| Hpy188I | TCNGA | 5 cut(s) | 91, 185, 390, 897, 946 |
| Hpy188III | TCNNGA | 7 cut(s) | 82, 140, 321, 455, 1036, 1820, 2115 |
| Hpy8I | GTNNAC | 2 cut(s) | 1556, 1892 |
| Hpy99I | CGWCG | 1 cut(s) | 1020 |
| HpyAV | CCTTC | 6 cut(s) | 538, 669, 1575, 1983, 2070, 2100 |
| HpyCH4III | ACNGT | 5 cut(s) | 116, 256, 605, 640, 799 |
| HpyCH4IV | ACGT | 1 cut(s) | 686 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 294, 517, 908, 1088, 1483, 1845, 1854 |
| HpyF3I | CTNAG | 6 cut(s) | 537, 654, 907, 1577, 1688, 1809 |
| HpySE526I | ACGT | 1 cut(s) | 686 |
| Kpn2I | TCCGGA | 1 cut(s) | 454 |
| Ksp22I | TGATCA | 1 cut(s) | 667 |
| LguI | GCTCTTC | 1 cut(s) | 30 |
| LmnI | GCTCC | 5 cut(s) | 367, 508, 1551, 1765, 1951 |
| Lsp1109I | GCAGC | 7 cut(s) | 284, 469, 579, 1094, 1771, 1848, 1933 |
| LweI | GCATC | 2 cut(s) | 1069, 2033 |
| MaeI | CTAG | 5 cut(s) | 1086, 1671, 1761, 1781, 1979 |
| MaeII | ACGT | 1 cut(s) | 686 |
| MaeIII | GTNAC | 2 cut(s) | 145, 1465 |
| MboII | GAAGA | 9 cut(s) | 44, 47, 56, 89, 104, 628, 1251, 1417, 2043 |
| MfeI | CAATTG | 1 cut(s) | 27 |
| MflI | RGATCY | 3 cut(s) | 94, 1498, 1534 |
| MhlI | GDGCHC | 1 cut(s) | 1548 |
| MlsI | TGGCCA | 2 cut(s) | 1848, 1857 |
| MluNI | TGGCCA | 2 cut(s) | 1848, 1857 |
| MlyI | GAGTC | 1 cut(s) | 326 |
| MmeI | TCCRAC | 1 cut(s) | 242 |
| Mox20I | TGGCCA | 2 cut(s) | 1848, 1857 |
| Mph1103I | ATGCAT | 1 cut(s) | 1479 |
| MroI | TCCGGA | 1 cut(s) | 454 |
| MroXI | GAANNNNTTC | 1 cut(s) | 96 |
| MscI | TGGCCA | 2 cut(s) | 1848, 1857 |
| MslI | CAYNNNNRTG | 4 cut(s) | 877, 930, 1472, 1519 |
| Msp20I | TGGCCA | 2 cut(s) | 1848, 1857 |
| MspA1I | CMGCKG | 1 cut(s) | 482 |
| MspCI | CTTAAG | 1 cut(s) | 1637 |
| MspI | CCGG | 1 cut(s) | 455 |
| MspR9I | CCNGG | 3 cut(s) | 471, 630, 783 |
| MunI | CAATTG | 1 cut(s) | 27 |
| Mva1269I | GAATGC | 1 cut(s) | 1572 |
| MvaI | CCWGG | 3 cut(s) | 471, 630, 783 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 294, 517, 908, 1088, 1483, 1845, 1854 |
| NdeI | CATATG | 2 cut(s) | 1119, 1603 |
| NlaIV | GGNNCC | 3 cut(s) | 510, 774, 1547 |
| NmeAIII | GCCGAG | 1 cut(s) | 537 |
| NmuCI | GTSAC | 2 cut(s) | 145, 1465 |
| NsiI | ATGCAT | 1 cut(s) | 1479 |
| NspI | RCATGY | 6 cut(s) | 238, 711, 1376, 1518, 1562, 1875 |
| PaeI | GCATGC | 2 cut(s) | 238, 711 |
| PagI | TCATGA | 1 cut(s) | 1819 |
| PciI | ACATGT | 1 cut(s) | 1871 |
| PciSI | GCTCTTC | 1 cut(s) | 30 |
| PctI | GAATGC | 1 cut(s) | 1572 |
| PdmI | GAANNNNTTC | 1 cut(s) | 96 |
| PfeI | GAWTC | 1 cut(s) | 136 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 782 |
| PfoI | TCCNGGA | 2 cut(s) | 469, 628 |
| PkrI | GCNGC | 7 cut(s) | 299, 484, 594, 1084, 1786, 1838, 1923 |
| PleI | GAGTC | 1 cut(s) | 326 |
| PpsI | GAGTC | 1 cut(s) | 326 |
| PscI | ACATGT | 1 cut(s) | 1871 |
| PsiI | TTATAA | 1 cut(s) | 887 |
| Psp6I | CCWGG | 3 cut(s) | 469, 628, 781 |
| PspFI | CCCAGC | 1 cut(s) | 2058 |
| PspGI | CCWGG | 3 cut(s) | 469, 628, 781 |
| PspN4I | GGNNCC | 3 cut(s) | 510, 774, 1547 |
| PspPI | GGNCC | 4 cut(s) | 738, 773, 1379, 1697 |
| PstI | CTGCAG | 1 cut(s) | 1180 |
| PstNI | CAGNNNCTG | 1 cut(s) | 470 |
| PsuI | RGATCY | 3 cut(s) | 94, 1498, 1534 |
| PvuII | CAGCTG | 1 cut(s) | 482 |
| RseI | CAYNNNNRTG | 4 cut(s) | 877, 930, 1472, 1519 |
| SapI | GCTCTTC | 1 cut(s) | 30 |
| SatI | GCNGC | 7 cut(s) | 298, 483, 593, 1083, 1785, 1837, 1922 |
| Sau96I | GGNCC | 4 cut(s) | 738, 773, 1379, 1697 |
| SchI | GAGTC | 1 cut(s) | 326 |
| ScrFI | CCNGG | 3 cut(s) | 471, 630, 783 |
| SduI | GDGCHC | 1 cut(s) | 1548 |
| SfaNI | GCATC | 2 cut(s) | 1069, 2033 |
| SfcI | CTRYAG | 1 cut(s) | 1176 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1854 |
| SinI | GGWCC | 3 cut(s) | 773, 1379, 1697 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 877, 930, 1472, 1519 |
| SmlI | CTYRAG | 3 cut(s) | 1301, 1637, 2016 |
| SmoI | CTYRAG | 3 cut(s) | 1301, 1637, 2016 |
| SphI | GCATGC | 2 cut(s) | 238, 711 |
| SsiI | CCGC | 2 cut(s) | 833, 902 |
| SspI | AATATT | 1 cut(s) | 1266 |
| SspMI | CTAG | 5 cut(s) | 1086, 1671, 1761, 1781, 1979 |
| StyD4I | CCNGG | 3 cut(s) | 469, 628, 781 |
| StyI | CCWWGG | 3 cut(s) | 973, 1103, 1382 |
| TaaI | ACNGT | 5 cut(s) | 116, 256, 605, 640, 799 |
| TaiI | ACGT | 1 cut(s) | 689 |
| TaqI | TCGA | 3 cut(s) | 320, 810, 2114 |
| TfiI | GAWTC | 1 cut(s) | 136 |
| TscAI | CASTG | 3 cut(s) | 121, 1688, 1699 |
| TseFI | GTSAC | 2 cut(s) | 145, 1465 |
| TseI | GCWGC | 7 cut(s) | 297, 482, 592, 1082, 1784, 1836, 1921 |
| Tsp45I | GTSAC | 2 cut(s) | 145, 1465 |
| TspDTI | ATGAA | 9 cut(s) | 89, 671, 754, 928, 1145, 1172, 1469, 1808, 2043 |
| TspGWI | ACGGA | 1 cut(s) | 1004 |
| TspRI | CASTG | 3 cut(s) | 121, 1688, 1699 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 782 |
| Vha464I | CTTAAG | 1 cut(s) | 1637 |
| VpaK11BI | GGWCC | 3 cut(s) | 773, 1379, 1697 |
| XapI | RAATTY | 5 cut(s) | 85, 361, 406, 553, 1826 |
| XceI | RCATGY | 6 cut(s) | 238, 711, 1376, 1518, 1562, 1875 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 748 |
| XmnI | GAANNNNTTC | 1 cut(s) | 96 |
| XspI | CTAG | 5 cut(s) | 1086, 1671, 1761, 1781, 1979 |
| Zsp2I | ATGCAT | 1 cut(s) | 1479 |