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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 46 |
| AcuI | CTGAAG | 1 cut(s) | 248 |
| AfaI | GTAC | 1 cut(s) | 239 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 528 |
| AgsI | TTSAA | 5 cut(s) | 109, 394, 443, 586, 611 |
| AjnI | CCWGG | 1 cut(s) | 246 |
| AleI | CACNNNNGTG | 1 cut(s) | 350 |
| AluBI | AGCT | 8 cut(s) | 14, 114, 130, 335, 413, 460, 602, 663 |
| AluI | AGCT | 8 cut(s) | 14, 114, 130, 335, 413, 460, 602, 663 |
| Alw26I | GTCTC | 1 cut(s) | 482 |
| AoxI | GGCC | 2 cut(s) | 46, 311 |
| ApeKI | GCWGC | 4 cut(s) | 127, 560, 660, 663 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 500 |
| AspS9I | GGNCC | 1 cut(s) | 244 |
| AsuC2I | CCSGG | 1 cut(s) | 72 |
| AsuHPI | GGTGA | 1 cut(s) | 605 |
| AvaII | GGWCC | 1 cut(s) | 244 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 221, 253 |
| BbvCI | CCTCAGC | 1 cut(s) | 603 |
| BbvI | GCAGC | 4 cut(s) | 139, 547, 650, 672 |
| BccI | CCATC | 3 cut(s) | 89, 267, 666 |
| BciT130I | CCWGG | 1 cut(s) | 248 |
| BcnI | CCSGG | 1 cut(s) | 72 |
| BcoDI | GTCTC | 1 cut(s) | 482 |
| BfaI | CTAG | 1 cut(s) | 414 |
| BfmI | CTRYAG | 1 cut(s) | 664 |
| BisI | GCNGC | 4 cut(s) | 128, 561, 661, 664 |
| BlsI | GCNGC | 4 cut(s) | 129, 562, 662, 665 |
| Bme1390I | CCNGG | 2 cut(s) | 72, 248 |
| Bme18I | GGWCC | 1 cut(s) | 244 |
| BmgT120I | GGNCC | 1 cut(s) | 244 |
| BmrFI | CCNGG | 2 cut(s) | 72, 248 |
| BmsI | GCATC | 1 cut(s) | 142 |
| Bpu10I | CCTNAGC | 1 cut(s) | 603 |
| BpuMI | CCSGG | 1 cut(s) | 72 |
| BsaAI | YACGTR | 1 cut(s) | 428 |
| BsaJI | CCNNGG | 2 cut(s) | 505, 527 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 528 |
| Bse118I | RCCGGY | 1 cut(s) | 48 |
| Bse1I | ACTGG | 1 cut(s) | 688 |
| Bse3DI | GCAATG | 1 cut(s) | 192 |
| BseBI | CCWGG | 1 cut(s) | 248 |
| BseDI | CCNNGG | 2 cut(s) | 505, 527 |
| BseGI | GGATG | 3 cut(s) | 67, 100, 278 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 528 |
| BseMI | GCAATG | 1 cut(s) | 192 |
| BseMII | CTCAG | 1 cut(s) | 594 |
| BseNI | ACTGG | 1 cut(s) | 688 |
| BseXI | GCAGC | 4 cut(s) | 139, 547, 650, 672 |
| BshFI | GGCC | 2 cut(s) | 48, 313 |
| BsiSI | CCGG | 2 cut(s) | 49, 71 |
| BslFI | GGGAC | 2 cut(s) | 190, 689 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 528 |
| BsmAI | GTCTC | 1 cut(s) | 482 |
| BsmFI | GGGAC | 2 cut(s) | 190, 689 |
| BsnI | GGCC | 2 cut(s) | 48, 313 |
| Bsp1407I | TGTACA | 1 cut(s) | 237 |
| Bsp143I | GATC | 1 cut(s) | 552 |
| BspANI | GGCC | 2 cut(s) | 48, 313 |
| BspCNI | CTCAG | 1 cut(s) | 595 |
| BspMAI | CTGCAG | 1 cut(s) | 668 |
| BsrDI | GCAATG | 1 cut(s) | 192 |
| BsrFI | RCCGGY | 1 cut(s) | 48 |
| BsrGI | TGTACA | 1 cut(s) | 237 |
| BsrI | ACTGG | 1 cut(s) | 688 |
| BssAI | RCCGGY | 1 cut(s) | 48 |
| BssECI | CCNNGG | 2 cut(s) | 505, 527 |
| BssMI | GATC | 1 cut(s) | 552 |
| BssT1I | CCWWGG | 2 cut(s) | 505, 527 |
| Bst2UI | CCWGG | 1 cut(s) | 248 |
| Bst6I | CTCTTC | 3 cut(s) | 302, 438, 461 |
| BstAUI | TGTACA | 1 cut(s) | 237 |
| BstBAI | YACGTR | 1 cut(s) | 428 |
| BstDEI | CTNAG | 1 cut(s) | 603 |
| BstF5I | GGATG | 3 cut(s) | 67, 100, 278 |
| BstKTI | GATC | 1 cut(s) | 555 |
| BstMAI | GTCTC | 1 cut(s) | 482 |
| BstMBI | GATC | 1 cut(s) | 552 |
| BstNI | CCWGG | 1 cut(s) | 248 |
| BstNSI | RCATGY | 3 cut(s) | 660, 696, 704 |
| BstSCI | CCNGG | 2 cut(s) | 70, 246 |
| BstSFI | CTRYAG | 1 cut(s) | 664 |
| BstV1I | GCAGC | 4 cut(s) | 139, 547, 650, 672 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 324 |
| BsuRI | GGCC | 2 cut(s) | 48, 313 |
| BtsCI | GGATG | 3 cut(s) | 67, 100, 278 |
| Cfr10I | RCCGGY | 1 cut(s) | 48 |
| Cfr13I | GGNCC | 1 cut(s) | 244 |
| Csp6I | GTAC | 1 cut(s) | 238 |
| CviAII | CATG | 7 cut(s) | 213, 219, 436, 643, 657, 693, 701 |
| CviQI | GTAC | 1 cut(s) | 238 |
| DdeI | CTNAG | 1 cut(s) | 603 |
| DpnI | GATC | 1 cut(s) | 554 |
| DpnII | GATC | 1 cut(s) | 552 |
| EaeI | YGGCCR | 1 cut(s) | 46 |
| Eam1104I | CTCTTC | 3 cut(s) | 302, 438, 461 |
| EarI | CTCTTC | 3 cut(s) | 302, 438, 461 |
| Eco130I | CCWWGG | 2 cut(s) | 505, 527 |
| Eco147I | AGGCCT | 1 cut(s) | 313 |
| Eco47I | GGWCC | 1 cut(s) | 244 |
| Eco57I | CTGAAG | 1 cut(s) | 248 |
| EcoO109I | RGGNCCY | 1 cut(s) | 244 |
| EcoRII | CCWGG | 1 cut(s) | 246 |
| EcoT14I | CCWWGG | 2 cut(s) | 505, 527 |
| ErhI | CCWWGG | 2 cut(s) | 505, 527 |
| FaeI | CATG | 7 cut(s) | 216, 222, 439, 646, 660, 696, 704 |
| FaqI | GGGAC | 2 cut(s) | 190, 689 |
| FatI | CATG | 7 cut(s) | 212, 218, 435, 642, 656, 692, 700 |
| FauNDI | CATATG | 1 cut(s) | 181 |
| Fnu4HI | GCNGC | 4 cut(s) | 128, 561, 661, 664 |
| FokI | GGATG | 3 cut(s) | 74, 107, 285 |
| Fsp4HI | GCNGC | 4 cut(s) | 128, 561, 661, 664 |
| FspBI | CTAG | 1 cut(s) | 414 |
| GluI | GCNGC | 4 cut(s) | 128, 561, 661, 664 |
| HaeIII | GGCC | 2 cut(s) | 48, 313 |
| HapII | CCGG | 2 cut(s) | 49, 71 |
| Hin1II | CATG | 7 cut(s) | 216, 222, 439, 646, 660, 696, 704 |
| HindIII | AAGCTT | 2 cut(s) | 333, 458 |
| HinfI | GANTC | 3 cut(s) | 209, 472, 687 |
| HpaII | CCGG | 2 cut(s) | 49, 71 |
| HphI | GGTGA | 1 cut(s) | 605 |
| Hpy166II | GTNNAC | 1 cut(s) | 640 |
| Hpy188I | TCNGA | 2 cut(s) | 228, 477 |
| Hpy188III | TCNNGA | 1 cut(s) | 55 |
| Hpy8I | GTNNAC | 1 cut(s) | 640 |
| HpyAV | CCTTC | 3 cut(s) | 52, 592, 614 |
| HpyCH4IV | ACGT | 1 cut(s) | 427 |
| HpyCH4V | TGCA | 7 cut(s) | 185, 330, 563, 660, 666, 696, 704 |
| HpyF3I | CTNAG | 1 cut(s) | 603 |
| HpySE526I | ACGT | 1 cut(s) | 427 |
| Hsp92II | CATG | 7 cut(s) | 216, 222, 439, 646, 660, 696, 704 |
| Kzo9I | GATC | 1 cut(s) | 552 |
| LmnI | GCTCC | 2 cut(s) | 98, 266 |
| LpnPI | CCDG | 6 cut(s) | 62, 84, 233, 255, 260, 669 |
| Lsp1109I | GCAGC | 4 cut(s) | 139, 547, 650, 672 |
| LweI | GCATC | 1 cut(s) | 142 |
| MaeI | CTAG | 1 cut(s) | 414 |
| MaeII | ACGT | 1 cut(s) | 427 |
| MaeIII | GTNAC | 2 cut(s) | 23, 359 |
| MalI | GATC | 1 cut(s) | 554 |
| MboI | GATC | 1 cut(s) | 552 |
| MboII | GAAGA | 6 cut(s) | 319, 430, 455, 478, 508, 681 |
| MluCI | AATT | 1 cut(s) | 355 |
| MlyI | GAGTC | 1 cut(s) | 218 |
| MmeI | TCCRAC | 2 cut(s) | 124, 380 |
| MnlI | CCTC | 6 cut(s) | 116, 303, 324, 462, 598, 639 |
| MroXI | GAANNNNTTC | 1 cut(s) | 500 |
| MseI | TTAA | 2 cut(s) | 342, 539 |
| MslI | CAYNNNNRTG | 2 cut(s) | 217, 350 |
| MspA1I | CMGCKG | 1 cut(s) | 663 |
| MspI | CCGG | 2 cut(s) | 49, 71 |
| MspR9I | CCNGG | 2 cut(s) | 72, 248 |
| MvaI | CCWGG | 1 cut(s) | 248 |
| NciI | CCSGG | 1 cut(s) | 72 |
| NdeI | CATATG | 1 cut(s) | 181 |
| NdeII | GATC | 1 cut(s) | 552 |
| NlaIII | CATG | 7 cut(s) | 216, 222, 439, 646, 660, 696, 704 |
| NmuCI | GTSAC | 2 cut(s) | 23, 359 |
| NspI | RCATGY | 3 cut(s) | 660, 696, 704 |
| OliI | CACNNNNGTG | 1 cut(s) | 350 |
| PceI | AGGCCT | 1 cut(s) | 313 |
| PdmI | GAANNNNTTC | 1 cut(s) | 500 |
| PfeI | GAWTC | 2 cut(s) | 472, 687 |
| PkrI | GCNGC | 4 cut(s) | 129, 562, 662, 665 |
| PleI | GAGTC | 1 cut(s) | 217 |
| PpsI | GAGTC | 1 cut(s) | 217 |
| Ppu21I | YACGTR | 1 cut(s) | 428 |
| PpuMI | RGGWCCY | 1 cut(s) | 244 |
| Psp5II | RGGWCCY | 1 cut(s) | 244 |
| Psp6I | CCWGG | 1 cut(s) | 246 |
| PspGI | CCWGG | 1 cut(s) | 246 |
| PspPI | GGNCC | 1 cut(s) | 244 |
| PspPPI | RGGWCCY | 1 cut(s) | 244 |
| PstI | CTGCAG | 1 cut(s) | 668 |
| PvuII | CAGCTG | 1 cut(s) | 663 |
| RsaI | GTAC | 1 cut(s) | 239 |
| RsaNI | GTAC | 1 cut(s) | 238 |
| RseI | CAYNNNNRTG | 2 cut(s) | 217, 350 |
| SaqAI | TTAA | 2 cut(s) | 342, 539 |
| SatI | GCNGC | 4 cut(s) | 128, 561, 661, 664 |
| Sau3AI | GATC | 1 cut(s) | 552 |
| Sau96I | GGNCC | 1 cut(s) | 244 |
| SchI | GAGTC | 1 cut(s) | 218 |
| ScrFI | CCNGG | 2 cut(s) | 72, 248 |
| SfaNI | GCATC | 1 cut(s) | 142 |
| SfcI | CTRYAG | 1 cut(s) | 664 |
| SinI | GGWCC | 1 cut(s) | 244 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 217, 350 |
| Sse9I | AATT | 1 cut(s) | 355 |
| SseBI | AGGCCT | 1 cut(s) | 313 |
| SspMI | CTAG | 1 cut(s) | 414 |
| StuI | AGGCCT | 1 cut(s) | 313 |
| StyD4I | CCNGG | 2 cut(s) | 70, 246 |
| StyI | CCWWGG | 2 cut(s) | 505, 527 |
| TaiI | ACGT | 1 cut(s) | 430 |
| TaqI | TCGA | 3 cut(s) | 56, 76, 121 |
| TasI | AATT | 1 cut(s) | 355 |
| TatI | WGTACW | 1 cut(s) | 237 |
| TfiI | GAWTC | 2 cut(s) | 472, 687 |
| Tru1I | TTAA | 2 cut(s) | 342, 539 |
| Tru9I | TTAA | 2 cut(s) | 342, 539 |
| TseFI | GTSAC | 2 cut(s) | 23, 359 |
| TseI | GCWGC | 4 cut(s) | 127, 560, 660, 663 |
| Tsp45I | GTSAC | 2 cut(s) | 23, 359 |
| TspDTI | ATGAA | 4 cut(s) | 81, 479, 509, 612 |
| VpaK11BI | GGWCC | 1 cut(s) | 244 |
| XceI | RCATGY | 3 cut(s) | 660, 696, 704 |
| XmnI | GAANNNNTTC | 1 cut(s) | 500 |
| XspI | CTAG | 1 cut(s) | 414 |