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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 338 |
| AarI | CACCTGC | 1 cut(s) | 451 |
| Acc36I | ACCTGC | 1 cut(s) | 451 |
| AccI | GTMKAC | 1 cut(s) | 888 |
| AciI | CCGC | 3 cut(s) | 758, 1068, 1377 |
| AclWI | GGATC | 4 cut(s) | 201, 446, 459, 877 |
| AcsI | RAATTY | 2 cut(s) | 159, 575 |
| AfaI | GTAC | 9 cut(s) | 77, 153, 610, 637, 708, 962, 1171, 1239, 1390 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 410, 1052 |
| AgsI | TTSAA | 8 cut(s) | 164, 305, 374, 817, 827, 925, 982, 1338 |
| AhlI | ACTAGT | 1 cut(s) | 166 |
| AjnI | CCWGG | 1 cut(s) | 1097 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 55, 87 |
| Alw21I | GWGCWC | 1 cut(s) | 1136 |
| AlwI | GGATC | 4 cut(s) | 201, 446, 459, 877 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1165, 1397 |
| Ama87I | CYCGRG | 1 cut(s) | 971 |
| AoxI | GGCC | 3 cut(s) | 503, 601, 789 |
| ApoI | RAATTY | 2 cut(s) | 159, 575 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1151 |
| AspS9I | GGNCC | 2 cut(s) | 602, 831 |
| AsuC2I | CCSGG | 1 cut(s) | 383 |
| AsuHPI | GGTGA | 2 cut(s) | 584, 602 |
| AvaI | CYCGRG | 1 cut(s) | 971 |
| AvaII | GGWCC | 1 cut(s) | 831 |
| AxyI | CCTNAGG | 1 cut(s) | 405 |
| BamHI | GGATCC | 1 cut(s) | 451 |
| BbsI | GAAGAC | 1 cut(s) | 989 |
| Bbv12I | GWGCWC | 1 cut(s) | 1136 |
| BccI | CCATC | 7 cut(s) | 14, 19, 92, 245, 404, 842, 1120 |
| BciT130I | CCWGG | 1 cut(s) | 1099 |
| BciVI | GTATCC | 1 cut(s) | 787 |
| BcnI | CCSGG | 1 cut(s) | 383 |
| BcuI | ACTAGT | 1 cut(s) | 166 |
| BfaI | CTAG | 8 cut(s) | 167, 282, 348, 710, 852, 933, 1278, 1410 |
| BfmI | CTRYAG | 2 cut(s) | 49, 793 |
| BfuAI | ACCTGC | 1 cut(s) | 451 |
| BfuI | GTATCC | 1 cut(s) | 787 |
| BmcAI | AGTACT | 3 cut(s) | 637, 708, 1239 |
| Bme1390I | CCNGG | 2 cut(s) | 383, 1099 |
| Bme18I | GGWCC | 1 cut(s) | 831 |
| BmeT110I | CYCGRG | 1 cut(s) | 971 |
| BmgT120I | GGNCC | 2 cut(s) | 602, 831 |
| BmiI | GGNNCC | 2 cut(s) | 453, 1375 |
| BmrFI | CCNGG | 2 cut(s) | 383, 1099 |
| BmsI | GCATC | 3 cut(s) | 919, 992, 1072 |
| BpiI | GAAGAC | 1 cut(s) | 989 |
| BpuEI | CTTGAG | 3 cut(s) | 411, 1101, 1327 |
| BpuMI | CCSGG | 1 cut(s) | 383 |
| BsaBI | GATNNNNATC | 2 cut(s) | 962, 1006 |
| BsaJI | CCNNGG | 4 cut(s) | 447, 900, 970, 1098 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 410, 1052 |
| Bse1I | ACTGG | 2 cut(s) | 991, 1177 |
| Bse21I | CCTNAGG | 1 cut(s) | 405 |
| Bse8I | GATNNNNATC | 2 cut(s) | 962, 1006 |
| BseBI | CCWGG | 1 cut(s) | 1099 |
| BseDI | CCNNGG | 4 cut(s) | 447, 900, 970, 1098 |
| BseGI | GGATG | 9 cut(s) | 30, 100, 190, 415, 523, 550, 963, 1007, 1261 |
| BseJI | GATNNNNATC | 2 cut(s) | 962, 1006 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 410, 1052 |
| BseMII | CTCAG | 1 cut(s) | 396 |
| BseNI | ACTGG | 2 cut(s) | 991, 1177 |
| BseYI | CCCAGC | 1 cut(s) | 1165 |
| BsgI | GTGCAG | 2 cut(s) | 738, 803 |
| BshFI | GGCC | 3 cut(s) | 505, 603, 791 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1136 |
| BsiHKCI | CYCGRG | 1 cut(s) | 971 |
| BsiSI | CCGG | 1 cut(s) | 383 |
| BslFI | GGGAC | 1 cut(s) | 875 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 410, 1052 |
| BsmFI | GGGAC | 1 cut(s) | 875 |
| BsnI | GGCC | 3 cut(s) | 505, 603, 791 |
| BsoBI | CYCGRG | 1 cut(s) | 971 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1136 |
| Bsp1407I | TGTACA | 1 cut(s) | 960 |
| Bsp143I | GATC | 5 cut(s) | 193, 451, 869, 1007, 1412 |
| BspACI | CCGC | 3 cut(s) | 758, 1068, 1377 |
| BspANI | GGCC | 3 cut(s) | 505, 603, 791 |
| BspCNI | CTCAG | 1 cut(s) | 397 |
| BspLI | GGNNCC | 2 cut(s) | 453, 1375 |
| BspMI | ACCTGC | 1 cut(s) | 451 |
| BspPI | GGATC | 4 cut(s) | 201, 446, 459, 877 |
| BsrGI | TGTACA | 1 cut(s) | 960 |
| BsrI | ACTGG | 2 cut(s) | 991, 1177 |
| BssECI | CCNNGG | 4 cut(s) | 447, 900, 970, 1098 |
| BssMI | GATC | 5 cut(s) | 193, 451, 869, 1007, 1412 |
| BssT1I | CCWWGG | 1 cut(s) | 447 |
| Bst2UI | CCWGG | 1 cut(s) | 1099 |
| Bst4CI | ACNGT | 6 cut(s) | 53, 80, 640, 904, 1028, 1161 |
| Bst6I | CTCTTC | 3 cut(s) | 300, 350, 642 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1325 |
| BstAUI | TGTACA | 1 cut(s) | 960 |
| BstC8I | GCNNGC | 2 cut(s) | 433, 789 |
| BstDEI | CTNAG | 4 cut(s) | 108, 405, 801, 1427 |
| BstDSI | CCRYGG | 1 cut(s) | 900 |
| BstF5I | GGATG | 9 cut(s) | 30, 100, 190, 415, 523, 550, 963, 1007, 1261 |
| BstKTI | GATC | 5 cut(s) | 196, 454, 872, 1010, 1415 |
| BstMBI | GATC | 5 cut(s) | 193, 451, 869, 1007, 1412 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 797, 806, 1274, 1325, 1331, 1355 |
| BstNI | CCWGG | 1 cut(s) | 1099 |
| BstSCI | CCNGG | 2 cut(s) | 381, 1097 |
| BstSFI | CTRYAG | 2 cut(s) | 49, 793 |
| BstV2I | GAAGAC | 1 cut(s) | 989 |
| BstX2I | RGATCY | 2 cut(s) | 193, 451 |
| BstYI | RGATCY | 2 cut(s) | 193, 451 |
| Bsu36I | CCTNAGG | 1 cut(s) | 405 |
| BsuI | GTATCC | 1 cut(s) | 787 |
| BsuRI | GGCC | 3 cut(s) | 505, 603, 791 |
| BtgI | CCRYGG | 1 cut(s) | 900 |
| BtsCI | GGATG | 9 cut(s) | 30, 100, 190, 415, 523, 550, 963, 1007, 1261 |
| BtsIMutI | CAGTG | 1 cut(s) | 58 |
| BveI | ACCTGC | 1 cut(s) | 451 |
| Cac8I | GCNNGC | 2 cut(s) | 433, 789 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1165, 1397 |
| Cfr13I | GGNCC | 2 cut(s) | 602, 831 |
| CseI | GACGC | 1 cut(s) | 137 |
| Csp6I | GTAC | 9 cut(s) | 76, 152, 609, 636, 707, 961, 1170, 1238, 1389 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1084, 1119 |
| CviAII | CATG | 3 cut(s) | 200, 838, 1049 |
| CviQI | GTAC | 9 cut(s) | 76, 152, 609, 636, 707, 961, 1170, 1238, 1389 |
| DdeI | CTNAG | 4 cut(s) | 108, 405, 801, 1427 |
| DpnI | GATC | 5 cut(s) | 195, 453, 871, 1009, 1414 |
| DpnII | GATC | 5 cut(s) | 193, 451, 869, 1007, 1412 |
| DraI | TTTAAA | 3 cut(s) | 952, 994, 1038 |
| Eam1104I | CTCTTC | 3 cut(s) | 300, 350, 642 |
| EarI | CTCTTC | 3 cut(s) | 300, 350, 642 |
| Eco130I | CCWWGG | 1 cut(s) | 447 |
| Eco147I | AGGCCT | 1 cut(s) | 791 |
| Eco47I | GGWCC | 1 cut(s) | 831 |
| Eco81I | CCTNAGG | 1 cut(s) | 405 |
| Eco88I | CYCGRG | 1 cut(s) | 971 |
| EcoRII | CCWGG | 1 cut(s) | 1097 |
| EcoT14I | CCWWGG | 1 cut(s) | 447 |
| ErhI | CCWWGG | 1 cut(s) | 447 |
| FaeI | CATG | 3 cut(s) | 203, 841, 1052 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1291, 1323 |
| FaqI | GGGAC | 1 cut(s) | 875 |
| FatI | CATG | 3 cut(s) | 199, 837, 1048 |
| FauI | CCCGC | 1 cut(s) | 751 |
| FauNDI | CATATG | 2 cut(s) | 240, 1111 |
| FblI | GTMKAC | 1 cut(s) | 888 |
| FokI | GGATG | 9 cut(s) | 37, 107, 197, 422, 530, 557, 970, 1014, 1268 |
| FspBI | CTAG | 8 cut(s) | 167, 282, 348, 710, 852, 933, 1278, 1410 |
| GsaI | CCCAGC | 1 cut(s) | 1169 |
| HaeIII | GGCC | 3 cut(s) | 505, 603, 791 |
| HapII | CCGG | 1 cut(s) | 383 |
| HgaI | GACGC | 1 cut(s) | 137 |
| Hin1II | CATG | 3 cut(s) | 203, 841, 1052 |
| HinfI | GANTC | 6 cut(s) | 386, 467, 692, 734, 1042, 1139 |
| HpaII | CCGG | 1 cut(s) | 383 |
| HphI | GGTGA | 2 cut(s) | 584, 602 |
| Hpy166II | GTNNAC | 4 cut(s) | 152, 889, 907, 1055 |
| Hpy188I | TCNGA | 5 cut(s) | 32, 226, 697, 730, 874 |
| Hpy188III | TCNNGA | 2 cut(s) | 471, 1344 |
| Hpy8I | GTNNAC | 4 cut(s) | 152, 889, 907, 1055 |
| HpyAV | CCTTC | 4 cut(s) | 51, 563, 1210, 1258 |
| HpyCH4III | ACNGT | 6 cut(s) | 53, 80, 640, 904, 1028, 1161 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 797, 806, 1274, 1325, 1331, 1355 |
| HpyF3I | CTNAG | 4 cut(s) | 108, 405, 801, 1427 |
| Hsp92II | CATG | 3 cut(s) | 203, 841, 1052 |
| Kzo9I | GATC | 5 cut(s) | 193, 451, 869, 1007, 1412 |
| LmnI | GCTCC | 4 cut(s) | 841, 1065, 1333, 1357 |
| LweI | GCATC | 3 cut(s) | 919, 992, 1072 |
| MaeI | CTAG | 8 cut(s) | 167, 282, 348, 710, 852, 933, 1278, 1410 |
| MaeIII | GTNAC | 2 cut(s) | 3, 234 |
| MalI | GATC | 5 cut(s) | 195, 453, 871, 1009, 1414 |
| MboI | GATC | 5 cut(s) | 193, 451, 869, 1007, 1412 |
| MflI | RGATCY | 2 cut(s) | 193, 451 |
| MhlI | GDGCHC | 1 cut(s) | 1136 |
| MluCI | AATT | 4 cut(s) | 132, 159, 474, 575 |
| MlyI | GAGTC | 2 cut(s) | 1051, 1133 |
| MmeI | TCCRAC | 1 cut(s) | 610 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1151 |
| MseI | TTAA | 7 cut(s) | 38, 114, 951, 993, 1037, 1208, 1361 |
| MspA1I | CMGCKG | 2 cut(s) | 758, 1379 |
| MspI | CCGG | 1 cut(s) | 383 |
| MspR9I | CCNGG | 2 cut(s) | 383, 1099 |
| MvaI | CCWGG | 1 cut(s) | 1099 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 797, 806, 1274, 1325, 1331, 1355 |
| NciI | CCSGG | 1 cut(s) | 383 |
| NdeI | CATATG | 2 cut(s) | 240, 1111 |
| NdeII | GATC | 5 cut(s) | 193, 451, 869, 1007, 1412 |
| NlaIII | CATG | 3 cut(s) | 203, 841, 1052 |
| NlaIV | GGNNCC | 2 cut(s) | 453, 1375 |
| NmuCI | GTSAC | 1 cut(s) | 3 |
| PaqCI | CACCTGC | 1 cut(s) | 451 |
| PceI | AGGCCT | 1 cut(s) | 791 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1151 |
| PfeI | GAWTC | 4 cut(s) | 386, 467, 692, 734 |
| PfoI | TCCNGGA | 1 cut(s) | 381 |
| PleI | GAGTC | 2 cut(s) | 1050, 1133 |
| PpsI | GAGTC | 2 cut(s) | 1050, 1133 |
| PsiI | TTATAA | 1 cut(s) | 338 |
| Psp6I | CCWGG | 1 cut(s) | 1097 |
| PspFI | CCCAGC | 1 cut(s) | 1165 |
| PspGI | CCWGG | 1 cut(s) | 1097 |
| PspN4I | GGNNCC | 2 cut(s) | 453, 1375 |
| PspPI | GGNCC | 2 cut(s) | 602, 831 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1165, 1397 |
| PsuI | RGATCY | 2 cut(s) | 193, 451 |
| RsaI | GTAC | 9 cut(s) | 77, 153, 610, 637, 708, 962, 1171, 1239, 1390 |
| RsaNI | GTAC | 9 cut(s) | 76, 152, 609, 636, 707, 961, 1170, 1238, 1389 |
| SaqAI | TTAA | 7 cut(s) | 38, 114, 951, 993, 1037, 1208, 1361 |
| Sau3AI | GATC | 5 cut(s) | 193, 451, 869, 1007, 1412 |
| Sau96I | GGNCC | 2 cut(s) | 602, 831 |
| ScaI | AGTACT | 3 cut(s) | 637, 708, 1239 |
| SchI | GAGTC | 2 cut(s) | 1051, 1133 |
| ScrFI | CCNGG | 2 cut(s) | 383, 1099 |
| SduI | GDGCHC | 1 cut(s) | 1136 |
| SfaNI | GCATC | 3 cut(s) | 919, 992, 1072 |
| SfcI | CTRYAG | 2 cut(s) | 49, 793 |
| SinI | GGWCC | 1 cut(s) | 831 |
| SmlI | CTYRAG | 3 cut(s) | 426, 1116, 1342 |
| SmoI | CTYRAG | 3 cut(s) | 426, 1116, 1342 |
| SpeI | ACTAGT | 1 cut(s) | 166 |
| Sse9I | AATT | 4 cut(s) | 132, 159, 474, 575 |
| SseBI | AGGCCT | 1 cut(s) | 791 |
| SsiI | CCGC | 3 cut(s) | 758, 1068, 1377 |
| SspMI | CTAG | 8 cut(s) | 167, 282, 348, 710, 852, 933, 1278, 1410 |
| StuI | AGGCCT | 1 cut(s) | 791 |
| StyD4I | CCNGG | 2 cut(s) | 381, 1097 |
| StyI | CCWWGG | 1 cut(s) | 447 |
| TaaI | ACNGT | 6 cut(s) | 53, 80, 640, 904, 1028, 1161 |
| TaqI | TCGA | 1 cut(s) | 660 |
| TasI | AATT | 4 cut(s) | 132, 159, 474, 575 |
| TatI | WGTACW | 5 cut(s) | 608, 635, 706, 960, 1237 |
| TfiI | GAWTC | 4 cut(s) | 386, 467, 692, 734 |
| Tru1I | TTAA | 7 cut(s) | 38, 114, 951, 993, 1037, 1208, 1361 |
| Tru9I | TTAA | 7 cut(s) | 38, 114, 951, 993, 1037, 1208, 1361 |
| TscAI | CASTG | 1 cut(s) | 58 |
| TseFI | GTSAC | 1 cut(s) | 3 |
| Tsp45I | GTSAC | 1 cut(s) | 3 |
| TspDTI | ATGAA | 6 cut(s) | 225, 327, 507, 537, 684, 747 |
| TspGWI | ACGGA | 1 cut(s) | 769 |
| TspRI | CASTG | 1 cut(s) | 58 |
| VpaK11BI | GGWCC | 1 cut(s) | 831 |
| XapI | RAATTY | 2 cut(s) | 159, 575 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 50 |
| XmiI | GTMKAC | 1 cut(s) | 888 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1151 |
| XspI | CTAG | 8 cut(s) | 167, 282, 348, 710, 852, 933, 1278, 1410 |
| ZrmI | AGTACT | 3 cut(s) | 637, 708, 1239 |