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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 86 |
| Acc36I | ACCTGC | 1 cut(s) | 503 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 934 |
| AccII | CGCG | 2 cut(s) | 131, 597 |
| AccIII | TCCGGA | 1 cut(s) | 197 |
| AciI | CCGC | 4 cut(s) | 107, 110, 450, 782 |
| AclWI | GGATC | 2 cut(s) | 552, 750 |
| AcsI | RAATTY | 1 cut(s) | 685 |
| AcuI | CTGAAG | 2 cut(s) | 384, 930 |
| AcvI | CACGTG | 1 cut(s) | 226 |
| AfaI | GTAC | 1 cut(s) | 460 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 182, 934 |
| AflIII | ACRYGT | 4 cut(s) | 129, 223, 225, 595 |
| AgsI | TTSAA | 2 cut(s) | 343, 762 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 38 |
| AjnI | CCWGG | 2 cut(s) | 181, 328 |
| AluBI | AGCT | 6 cut(s) | 124, 357, 494, 536, 681, 914 |
| AluI | AGCT | 6 cut(s) | 124, 357, 494, 536, 681, 914 |
| Alw21I | GWGCWC | 2 cut(s) | 262, 377 |
| Alw26I | GTCTC | 1 cut(s) | 191 |
| Alw44I | GTGCAC | 1 cut(s) | 373 |
| AlwI | GGATC | 2 cut(s) | 552, 750 |
| Ama87I | CYCGRG | 2 cut(s) | 35, 647 |
| Aor13HI | TCCGGA | 1 cut(s) | 197 |
| AoxI | GGCC | 3 cut(s) | 6, 210, 851 |
| ApaLI | GTGCAC | 1 cut(s) | 373 |
| ApeKI | GCWGC | 4 cut(s) | 155, 350, 533, 914 |
| ApoI | RAATTY | 1 cut(s) | 685 |
| AspA2I | CCTAGG | 1 cut(s) | 25 |
| AspLEI | GCGC | 2 cut(s) | 115, 768 |
| AspS9I | GGNCC | 5 cut(s) | 32, 40, 88, 384, 841 |
| AsuHPI | GGTGA | 3 cut(s) | 431, 886, 917 |
| AsuNHI | GCTAGC | 1 cut(s) | 170 |
| AvaI | CYCGRG | 2 cut(s) | 35, 647 |
| AvaII | GGWCC | 5 cut(s) | 32, 40, 88, 384, 841 |
| AvrII | CCTAGG | 1 cut(s) | 25 |
| BaeGI | GKGCMC | 1 cut(s) | 377 |
| BanII | GRGCYC | 1 cut(s) | 446 |
| BbrPI | CACGTG | 1 cut(s) | 226 |
| BbsI | GAAGAC | 1 cut(s) | 69 |
| Bbv12I | GWGCWC | 2 cut(s) | 262, 377 |
| BbvI | GCAGC | 4 cut(s) | 167, 337, 545, 901 |
| BccI | CCATC | 4 cut(s) | 212, 469, 686, 782 |
| BceAI | ACGGC | 2 cut(s) | 97, 197 |
| BciT130I | CCWGG | 2 cut(s) | 183, 330 |
| BcoDI | GTCTC | 1 cut(s) | 191 |
| BfaI | CTAG | 4 cut(s) | 26, 171, 447, 495 |
| BfmI | CTRYAG | 1 cut(s) | 915 |
| BfoI | RGCGCY | 2 cut(s) | 116, 769 |
| BfuAI | ACCTGC | 1 cut(s) | 503 |
| BisI | GCNGC | 7 cut(s) | 108, 111, 156, 351, 534, 783, 915 |
| BlnI | CCTAGG | 1 cut(s) | 25 |
| BlsI | GCNGC | 7 cut(s) | 109, 112, 157, 352, 535, 784, 916 |
| Bme1390I | CCNGG | 2 cut(s) | 183, 330 |
| Bme18I | GGWCC | 5 cut(s) | 32, 40, 88, 384, 841 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 38 |
| BmeT110I | CYCGRG | 2 cut(s) | 35, 647 |
| BmgT120I | GGNCC | 5 cut(s) | 32, 40, 88, 384, 841 |
| BmiI | GGNNCC | 3 cut(s) | 34, 202, 324 |
| BmrFI | CCNGG | 2 cut(s) | 183, 330 |
| BmrI | ACTGGG | 1 cut(s) | 496 |
| BmsI | GCATC | 1 cut(s) | 337 |
| BmtI | GCTAGC | 1 cut(s) | 174 |
| BmuI | ACTGGG | 1 cut(s) | 496 |
| BpiI | GAAGAC | 1 cut(s) | 69 |
| BpuEI | CTTGAG | 1 cut(s) | 147 |
| BsaAI | YACGTR | 1 cut(s) | 226 |
| BsaI | GGTCTC | 1 cut(s) | 191 |
| BsaJI | CCNNGG | 4 cut(s) | 25, 36, 181, 646 |
| BsaWI | WCCGGW | 3 cut(s) | 197, 319, 416 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 210, 240, 483, 513 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 182, 934 |
| Bse118I | RCCGGY | 1 cut(s) | 405 |
| Bse1I | ACTGG | 2 cut(s) | 491, 928 |
| BseAI | TCCGGA | 1 cut(s) | 197 |
| BseBI | CCWGG | 2 cut(s) | 183, 330 |
| BseDI | CCNNGG | 4 cut(s) | 25, 36, 181, 646 |
| BseGI | GGATG | 2 cut(s) | 352, 774 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 182, 934 |
| BseNI | ACTGG | 2 cut(s) | 491, 928 |
| BseRI | GAGGAG | 1 cut(s) | 288 |
| BseSI | GKGCMC | 1 cut(s) | 377 |
| BseXI | GCAGC | 4 cut(s) | 167, 337, 545, 901 |
| Bsh1236I | CGCG | 2 cut(s) | 131, 597 |
| BshFI | GGCC | 3 cut(s) | 8, 212, 853 |
| BsiHKAI | GWGCWC | 2 cut(s) | 262, 377 |
| BsiHKCI | CYCGRG | 2 cut(s) | 35, 647 |
| BsiSI | CCGG | 5 cut(s) | 198, 302, 320, 406, 417 |
| BslFI | GGGAC | 1 cut(s) | 727 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 182, 934 |
| BsmAI | GTCTC | 1 cut(s) | 191 |
| BsmFI | GGGAC | 1 cut(s) | 727 |
| BsnI | GGCC | 3 cut(s) | 8, 212, 853 |
| Bso31I | GGTCTC | 1 cut(s) | 191 |
| BsoBI | CYCGRG | 2 cut(s) | 35, 647 |
| Bsp1286I | GDGCHC | 3 cut(s) | 262, 377, 446 |
| Bsp13I | TCCGGA | 1 cut(s) | 197 |
| Bsp143I | GATC | 4 cut(s) | 247, 544, 742, 885 |
| BspACI | CCGC | 4 cut(s) | 107, 110, 450, 782 |
| BspANI | GGCC | 3 cut(s) | 8, 212, 853 |
| BspEI | TCCGGA | 1 cut(s) | 197 |
| BspFNI | CGCG | 2 cut(s) | 131, 597 |
| BspLI | GGNNCC | 3 cut(s) | 34, 202, 324 |
| BspMAI | CTGCAG | 1 cut(s) | 919 |
| BspMI | ACCTGC | 1 cut(s) | 503 |
| BspOI | GCTAGC | 1 cut(s) | 174 |
| BspPI | GGATC | 2 cut(s) | 552, 750 |
| BspTNI | GGTCTC | 1 cut(s) | 191 |
| BsrFI | RCCGGY | 1 cut(s) | 405 |
| BsrI | ACTGG | 2 cut(s) | 491, 928 |
| BssAI | RCCGGY | 1 cut(s) | 405 |
| BssECI | CCNNGG | 4 cut(s) | 25, 36, 181, 646 |
| BssMI | GATC | 4 cut(s) | 247, 544, 742, 885 |
| BssT1I | CCWWGG | 1 cut(s) | 25 |
| Bst2UI | CCWGG | 2 cut(s) | 183, 330 |
| Bst4CI | ACNGT | 2 cut(s) | 22, 379 |
| BstBAI | YACGTR | 1 cut(s) | 226 |
| BstC8I | GCNNGC | 9 cut(s) | 172, 355, 373, 407, 595, 654, 855, 868, 947 |
| BstDEI | CTNAG | 1 cut(s) | 266 |
| BstF5I | GGATG | 2 cut(s) | 352, 774 |
| BstFNI | CGCG | 2 cut(s) | 131, 597 |
| BstH2I | RGCGCY | 2 cut(s) | 116, 769 |
| BstHHI | GCGC | 2 cut(s) | 115, 768 |
| BstKTI | GATC | 4 cut(s) | 250, 547, 745, 888 |
| BstMAI | GTCTC | 1 cut(s) | 191 |
| BstMBI | GATC | 4 cut(s) | 247, 544, 742, 885 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 121, 302, 763, 863, 920 |
| BstNI | CCWGG | 2 cut(s) | 183, 330 |
| BstSCI | CCNGG | 2 cut(s) | 181, 328 |
| BstSFI | CTRYAG | 1 cut(s) | 915 |
| BstSLI | GKGCMC | 1 cut(s) | 377 |
| BstUI | CGCG | 2 cut(s) | 131, 597 |
| BstV1I | GCAGC | 4 cut(s) | 167, 337, 545, 901 |
| BstV2I | GAAGAC | 1 cut(s) | 69 |
| BstX2I | RGATCY | 2 cut(s) | 544, 742 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 785, 953 |
| BstYI | RGATCY | 2 cut(s) | 544, 742 |
| BsuRI | GGCC | 3 cut(s) | 8, 212, 853 |
| BtsCI | GGATG | 2 cut(s) | 352, 774 |
| BtsIMutI | CAGTG | 1 cut(s) | 375 |
| BveI | ACCTGC | 1 cut(s) | 503 |
| Cac8I | GCNNGC | 9 cut(s) | 172, 355, 373, 407, 595, 654, 855, 868, 947 |
| CfoI | GCGC | 2 cut(s) | 115, 768 |
| Cfr10I | RCCGGY | 1 cut(s) | 405 |
| Cfr13I | GGNCC | 5 cut(s) | 32, 40, 88, 384, 841 |
| CseI | GACGC | 1 cut(s) | 137 |
| CsiI | ACCWGGT | 1 cut(s) | 328 |
| Csp6I | GTAC | 1 cut(s) | 459 |
| CviAII | CATG | 2 cut(s) | 437, 845 |
| CviQI | GTAC | 1 cut(s) | 459 |
| DdeI | CTNAG | 1 cut(s) | 266 |
| DpnI | GATC | 4 cut(s) | 249, 546, 744, 887 |
| DpnII | GATC | 4 cut(s) | 247, 544, 742, 885 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 86 |
| DriI | GACNNNNNGTC | 1 cut(s) | 38 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 86 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 38 |
| Eco130I | CCWWGG | 1 cut(s) | 25 |
| Eco24I | GRGCYC | 1 cut(s) | 446 |
| Eco31I | GGTCTC | 1 cut(s) | 191 |
| Eco47I | GGWCC | 5 cut(s) | 32, 40, 88, 384, 841 |
| Eco57I | CTGAAG | 2 cut(s) | 384, 930 |
| Eco72I | CACGTG | 1 cut(s) | 226 |
| Eco88I | CYCGRG | 2 cut(s) | 35, 647 |
| EcoO109I | RGGNCCY | 2 cut(s) | 40, 88 |
| EcoRII | CCWGG | 2 cut(s) | 181, 328 |
| EcoT14I | CCWWGG | 1 cut(s) | 25 |
| EcoT38I | GRGCYC | 1 cut(s) | 446 |
| ErhI | CCWWGG | 1 cut(s) | 25 |
| FaeI | CATG | 2 cut(s) | 440, 848 |
| FaiI | YATR | 6 cut(s) | 282, 398, 438, 562, 846, 951 |
| FaqI | GGGAC | 1 cut(s) | 727 |
| FatI | CATG | 2 cut(s) | 436, 844 |
| Fnu4HI | GCNGC | 7 cut(s) | 108, 111, 156, 351, 534, 783, 915 |
| FokI | GGATG | 2 cut(s) | 359, 761 |
| FriOI | GRGCYC | 1 cut(s) | 446 |
| Fsp4HI | GCNGC | 7 cut(s) | 108, 111, 156, 351, 534, 783, 915 |
| FspBI | CTAG | 4 cut(s) | 26, 171, 447, 495 |
| GlaI | GCGC | 2 cut(s) | 114, 767 |
| GluI | GCNGC | 7 cut(s) | 108, 111, 156, 351, 534, 783, 915 |
| HaeII | RGCGCY | 2 cut(s) | 116, 769 |
| HaeIII | GGCC | 3 cut(s) | 8, 212, 853 |
| HapII | CCGG | 5 cut(s) | 198, 302, 320, 406, 417 |
| HgaI | GACGC | 1 cut(s) | 137 |
| HhaI | GCGC | 2 cut(s) | 115, 768 |
| Hin1II | CATG | 2 cut(s) | 440, 848 |
| Hin6I | GCGC | 2 cut(s) | 113, 766 |
| HinP1I | GCGC | 2 cut(s) | 113, 766 |
| HindIII | AAGCTT | 1 cut(s) | 355 |
| HinfI | GANTC | 4 cut(s) | 433, 469, 795, 961 |
| HpaII | CCGG | 5 cut(s) | 198, 302, 320, 406, 417 |
| HphI | GGTGA | 3 cut(s) | 431, 886, 917 |
| Hpy166II | GTNNAC | 3 cut(s) | 32, 375, 387 |
| Hpy188I | TCNGA | 5 cut(s) | 138, 218, 474, 800, 910 |
| Hpy188III | TCNNGA | 4 cut(s) | 188, 198, 362, 806 |
| Hpy8I | GTNNAC | 3 cut(s) | 32, 375, 387 |
| Hpy99I | CGWCG | 2 cut(s) | 131, 218 |
| HpyAV | CCTTC | 2 cut(s) | 283, 337 |
| HpyCH4III | ACNGT | 2 cut(s) | 22, 379 |
| HpyCH4IV | ACGT | 1 cut(s) | 225 |
| HpyCH4V | TGCA | 5 cut(s) | 353, 375, 593, 857, 917 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 121, 302, 763, 863, 920 |
| HpyF3I | CTNAG | 1 cut(s) | 266 |
| HpySE526I | ACGT | 1 cut(s) | 225 |
| Hsp92II | CATG | 2 cut(s) | 440, 848 |
| HspAI | GCGC | 2 cut(s) | 113, 766 |
| Kpn2I | TCCGGA | 1 cut(s) | 197 |
| KroI | GCCGGC | 1 cut(s) | 405 |
| KroNI | GCCGGC | 1 cut(s) | 407 |
| Kzo9I | GATC | 4 cut(s) | 247, 544, 742, 885 |
| LmnI | GCTCC | 1 cut(s) | 491 |
| Lsp1109I | GCAGC | 4 cut(s) | 167, 337, 545, 901 |
| LweI | GCATC | 1 cut(s) | 337 |
| MabI | ACCWGGT | 1 cut(s) | 328 |
| MaeI | CTAG | 4 cut(s) | 26, 171, 447, 495 |
| MaeII | ACGT | 1 cut(s) | 225 |
| MaeIII | GTNAC | 3 cut(s) | 228, 505, 730 |
| MalI | GATC | 4 cut(s) | 249, 546, 744, 887 |
| MboI | GATC | 4 cut(s) | 247, 544, 742, 885 |
| MboII | GAAGA | 5 cut(s) | 74, 308, 405, 533, 617 |
| MfeI | CAATTG | 1 cut(s) | 858 |
| MflI | RGATCY | 2 cut(s) | 544, 742 |
| MhlI | GDGCHC | 3 cut(s) | 262, 377, 446 |
| MluCI | AATT | 6 cut(s) | 453, 568, 685, 737, 825, 858 |
| MluI | ACGCGT | 2 cut(s) | 129, 595 |
| MlyI | GAGTC | 1 cut(s) | 804 |
| MmeI | TCCRAC | 2 cut(s) | 70, 196 |
| MroI | TCCGGA | 1 cut(s) | 197 |
| MroNI | GCCGGC | 1 cut(s) | 405 |
| MseI | TTAA | 1 cut(s) | 683 |
| MspI | CCGG | 5 cut(s) | 198, 302, 320, 406, 417 |
| MspR9I | CCNGG | 2 cut(s) | 183, 330 |
| MunI | CAATTG | 1 cut(s) | 858 |
| MvaI | CCWGG | 2 cut(s) | 183, 330 |
| MvnI | CGCG | 2 cut(s) | 131, 597 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 121, 302, 763, 863, 920 |
| NaeI | GCCGGC | 1 cut(s) | 407 |
| NdeII | GATC | 4 cut(s) | 247, 544, 742, 885 |
| NgoMIV | GCCGGC | 1 cut(s) | 405 |
| NheI | GCTAGC | 1 cut(s) | 170 |
| NlaIII | CATG | 2 cut(s) | 440, 848 |
| NlaIV | GGNNCC | 3 cut(s) | 34, 202, 324 |
| NmeAIII | GCCGAG | 1 cut(s) | 310 |
| NmuCI | GTSAC | 3 cut(s) | 228, 505, 730 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 222 |
| PdiI | GCCGGC | 1 cut(s) | 407 |
| PfeI | GAWTC | 3 cut(s) | 433, 469, 961 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 934 |
| PkrI | GCNGC | 7 cut(s) | 109, 112, 157, 352, 535, 784, 916 |
| PleI | GAGTC | 1 cut(s) | 803 |
| PmaCI | CACGTG | 1 cut(s) | 226 |
| PmlI | CACGTG | 1 cut(s) | 226 |
| PpsI | GAGTC | 1 cut(s) | 803 |
| Ppu21I | YACGTR | 1 cut(s) | 226 |
| PpuMI | RGGWCCY | 2 cut(s) | 40, 88 |
| Psp5II | RGGWCCY | 2 cut(s) | 40, 88 |
| Psp6I | CCWGG | 2 cut(s) | 181, 328 |
| PspCI | CACGTG | 1 cut(s) | 226 |
| PspGI | CCWGG | 2 cut(s) | 181, 328 |
| PspN4I | GGNNCC | 3 cut(s) | 34, 202, 324 |
| PspPI | GGNCC | 5 cut(s) | 32, 40, 88, 384, 841 |
| PspPPI | RGGWCCY | 2 cut(s) | 40, 88 |
| PstI | CTGCAG | 1 cut(s) | 919 |
| PsuI | RGATCY | 2 cut(s) | 544, 742 |
| RsaI | GTAC | 1 cut(s) | 460 |
| RsaNI | GTAC | 1 cut(s) | 459 |
| SaqAI | TTAA | 1 cut(s) | 683 |
| SatI | GCNGC | 7 cut(s) | 108, 111, 156, 351, 534, 783, 915 |
| Sau3AI | GATC | 4 cut(s) | 247, 544, 742, 885 |
| Sau96I | GGNCC | 5 cut(s) | 32, 40, 88, 384, 841 |
| SchI | GAGTC | 1 cut(s) | 804 |
| ScrFI | CCNGG | 2 cut(s) | 183, 330 |
| SduI | GDGCHC | 3 cut(s) | 262, 377, 446 |
| SexAI | ACCWGGT | 1 cut(s) | 328 |
| SfaNI | GCATC | 1 cut(s) | 337 |
| SfcI | CTRYAG | 1 cut(s) | 915 |
| SinI | GGWCC | 5 cut(s) | 32, 40, 88, 384, 841 |
| SmlI | CTYRAG | 1 cut(s) | 162 |
| SmoI | CTYRAG | 1 cut(s) | 162 |
| Sse9I | AATT | 6 cut(s) | 453, 568, 685, 737, 825, 858 |
| SsiI | CCGC | 4 cut(s) | 107, 110, 450, 782 |
| SspMI | CTAG | 4 cut(s) | 26, 171, 447, 495 |
| StyD4I | CCNGG | 2 cut(s) | 181, 328 |
| StyI | CCWWGG | 1 cut(s) | 25 |
| TaaI | ACNGT | 2 cut(s) | 22, 379 |
| TaiI | ACGT | 1 cut(s) | 228 |
| TaqI | TCGA | 5 cut(s) | 60, 102, 126, 189, 207 |
| TasI | AATT | 6 cut(s) | 453, 568, 685, 737, 825, 858 |
| TauI | GCSGC | 3 cut(s) | 110, 113, 785 |
| TfiI | GAWTC | 3 cut(s) | 433, 469, 961 |
| Tru1I | TTAA | 1 cut(s) | 683 |
| Tru9I | TTAA | 1 cut(s) | 683 |
| TscAI | CASTG | 1 cut(s) | 382 |
| TseFI | GTSAC | 3 cut(s) | 228, 505, 730 |
| TseI | GCWGC | 4 cut(s) | 155, 350, 533, 914 |
| Tsp45I | GTSAC | 3 cut(s) | 228, 505, 730 |
| TspDTI | ATGAA | 3 cut(s) | 17, 425, 534 |
| TspGWI | ACGGA | 2 cut(s) | 737, 963 |
| TspRI | CASTG | 1 cut(s) | 382 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 934 |
| VneI | GTGCAC | 1 cut(s) | 373 |
| VpaK11BI | GGWCC | 5 cut(s) | 32, 40, 88, 384, 841 |
| XapI | RAATTY | 1 cut(s) | 685 |
| XmaJI | CCTAGG | 1 cut(s) | 25 |
| XspI | CTAG | 4 cut(s) | 26, 171, 447, 495 |