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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 20, 478, 497 |
| AfaI | GTAC | 2 cut(s) | 118, 498 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 549 |
| AflIII | ACRYGT | 1 cut(s) | 188 |
| AgsI | TTSAA | 6 cut(s) | 260, 379, 387, 434, 459, 489 |
| AjnI | CCWGG | 1 cut(s) | 61 |
| AluBI | AGCT | 6 cut(s) | 221, 272, 322, 383, 437, 578 |
| AluI | AGCT | 6 cut(s) | 221, 272, 322, 383, 437, 578 |
| Alw26I | GTCTC | 2 cut(s) | 147, 319 |
| AlwI | GGATC | 3 cut(s) | 20, 478, 497 |
| Ama87I | CYCGRG | 1 cut(s) | 565 |
| AoxI | GGCC | 3 cut(s) | 68, 172, 425 |
| ApeKI | GCWGC | 8 cut(s) | 58, 92, 227, 272, 292, 407, 437, 527 |
| AspS9I | GGNCC | 1 cut(s) | 69 |
| AsuHPI | GGTGA | 1 cut(s) | 32 |
| AvaI | CYCGRG | 1 cut(s) | 565 |
| BaeGI | GKGCMC | 1 cut(s) | 466 |
| BbvI | GCAGC | 8 cut(s) | 70, 79, 214, 259, 304, 394, 424, 514 |
| BccI | CCATC | 1 cut(s) | 107 |
| BciT130I | CCWGG | 1 cut(s) | 63 |
| BcoDI | GTCTC | 2 cut(s) | 147, 319 |
| BfaI | CTAG | 1 cut(s) | 15 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 67 |
| BisI | GCNGC | 8 cut(s) | 59, 93, 228, 273, 293, 408, 438, 528 |
| BlsI | GCNGC | 8 cut(s) | 60, 94, 229, 274, 294, 409, 439, 529 |
| Bme1390I | CCNGG | 1 cut(s) | 63 |
| BmeT110I | CYCGRG | 1 cut(s) | 565 |
| BmgT120I | GGNCC | 1 cut(s) | 69 |
| BmrFI | CCNGG | 1 cut(s) | 63 |
| BmsI | GCATC | 4 cut(s) | 123, 449, 521, 539 |
| BpuEI | CTTGAG | 1 cut(s) | 37 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 549 |
| BseBI | CCWGG | 1 cut(s) | 63 |
| BseGI | GGATG | 1 cut(s) | 138 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 549 |
| BseMII | CTCAG | 2 cut(s) | 314, 363 |
| BseRI | GAGGAG | 1 cut(s) | 33 |
| BseSI | GKGCMC | 1 cut(s) | 466 |
| BseXI | GCAGC | 8 cut(s) | 70, 79, 214, 259, 304, 394, 424, 514 |
| BsgI | GTGCAG | 1 cut(s) | 459 |
| BshFI | GGCC | 3 cut(s) | 70, 174, 427 |
| BsiHKCI | CYCGRG | 1 cut(s) | 565 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 549 |
| BsmAI | GTCTC | 2 cut(s) | 147, 319 |
| BsnI | GGCC | 3 cut(s) | 70, 174, 427 |
| BsoBI | CYCGRG | 1 cut(s) | 565 |
| Bsp1286I | GDGCHC | 1 cut(s) | 466 |
| Bsp1407I | TGTACA | 1 cut(s) | 496 |
| Bsp143I | GATC | 3 cut(s) | 25, 470, 502 |
| BspANI | GGCC | 3 cut(s) | 70, 174, 427 |
| BspCNI | CTCAG | 2 cut(s) | 315, 364 |
| BspPI | GGATC | 3 cut(s) | 20, 478, 497 |
| BsrGI | TGTACA | 1 cut(s) | 496 |
| BssMI | GATC | 3 cut(s) | 25, 470, 502 |
| Bst2UI | CCWGG | 1 cut(s) | 63 |
| Bst4CI | ACNGT | 2 cut(s) | 121, 161 |
| BstAUI | TGTACA | 1 cut(s) | 496 |
| BstC8I | GCNNGC | 1 cut(s) | 400 |
| BstDEI | CTNAG | 4 cut(s) | 146, 312, 323, 372 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 547 |
| BstF5I | GGATG | 1 cut(s) | 138 |
| BstKTI | GATC | 3 cut(s) | 28, 473, 505 |
| BstMAI | GTCTC | 2 cut(s) | 147, 319 |
| BstMBI | GATC | 3 cut(s) | 25, 470, 502 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 67, 227, 292, 404 |
| BstNI | CCWGG | 1 cut(s) | 63 |
| BstNSI | RCATGY | 1 cut(s) | 192 |
| BstSCI | CCNGG | 1 cut(s) | 61 |
| BstSLI | GKGCMC | 1 cut(s) | 466 |
| BstV1I | GCAGC | 8 cut(s) | 70, 79, 214, 259, 304, 394, 424, 514 |
| BstX2I | RGATCY | 3 cut(s) | 25, 470, 502 |
| BstYI | RGATCY | 3 cut(s) | 25, 470, 502 |
| BsuRI | GGCC | 3 cut(s) | 70, 174, 427 |
| BtsCI | GGATG | 1 cut(s) | 138 |
| Cac8I | GCNNGC | 1 cut(s) | 400 |
| Cfr13I | GGNCC | 1 cut(s) | 69 |
| CseI | GACGC | 1 cut(s) | 404 |
| Csp6I | GTAC | 2 cut(s) | 117, 497 |
| CviAII | CATG | 2 cut(s) | 189, 307 |
| CviQI | GTAC | 2 cut(s) | 117, 497 |
| DdeI | CTNAG | 4 cut(s) | 146, 312, 323, 372 |
| DpnI | GATC | 3 cut(s) | 27, 472, 504 |
| DpnII | GATC | 3 cut(s) | 25, 470, 502 |
| Eco147I | AGGCCT | 1 cut(s) | 427 |
| Eco88I | CYCGRG | 1 cut(s) | 565 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 547 |
| EcoRII | CCWGG | 1 cut(s) | 61 |
| EcoT22I | ATGCAT | 1 cut(s) | 514 |
| FaeI | CATG | 2 cut(s) | 192, 310 |
| FaiI | YATR | 6 cut(s) | 99, 177, 190, 308, 354, 356 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 15, 47 |
| FatI | CATG | 2 cut(s) | 188, 306 |
| Fnu4HI | GCNGC | 8 cut(s) | 59, 93, 228, 273, 293, 408, 438, 528 |
| FokI | GGATG | 1 cut(s) | 145 |
| Fsp4HI | GCNGC | 8 cut(s) | 59, 93, 228, 273, 293, 408, 438, 528 |
| FspBI | CTAG | 1 cut(s) | 15 |
| GluI | GCNGC | 8 cut(s) | 59, 93, 228, 273, 293, 408, 438, 528 |
| HaeIII | GGCC | 3 cut(s) | 70, 174, 427 |
| HgaI | GACGC | 1 cut(s) | 404 |
| Hin1II | CATG | 2 cut(s) | 192, 310 |
| HindIII | AAGCTT | 1 cut(s) | 381 |
| HphI | GGTGA | 1 cut(s) | 32 |
| Hpy166II | GTNNAC | 1 cut(s) | 164 |
| Hpy188I | TCNGA | 1 cut(s) | 547 |
| Hpy188III | TCNNGA | 1 cut(s) | 15 |
| Hpy8I | GTNNAC | 1 cut(s) | 164 |
| HpyAV | CCTTC | 3 cut(s) | 205, 257, 361 |
| HpyCH4III | ACNGT | 2 cut(s) | 121, 161 |
| HpyCH4V | TGCA | 6 cut(s) | 136, 402, 440, 476, 512, 530 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 67, 227, 292, 404 |
| HpyF3I | CTNAG | 4 cut(s) | 146, 312, 323, 372 |
| Hsp92II | CATG | 2 cut(s) | 192, 310 |
| Kzo9I | GATC | 3 cut(s) | 25, 470, 502 |
| LmnI | GCTCC | 2 cut(s) | 415, 575 |
| LpnPI | CCDG | 4 cut(s) | 48, 75, 441, 564 |
| Lsp1109I | GCAGC | 8 cut(s) | 70, 79, 214, 259, 304, 394, 424, 514 |
| LweI | GCATC | 4 cut(s) | 123, 449, 521, 539 |
| MaeI | CTAG | 1 cut(s) | 15 |
| MalI | GATC | 3 cut(s) | 27, 472, 504 |
| MboI | GATC | 3 cut(s) | 25, 470, 502 |
| MboII | GAAGA | 2 cut(s) | 35, 272 |
| MflI | RGATCY | 3 cut(s) | 25, 470, 502 |
| MhlI | GDGCHC | 1 cut(s) | 466 |
| MluCI | AATT | 2 cut(s) | 333, 483 |
| MmeI | TCCRAC | 1 cut(s) | 372 |
| MnlI | CCTC | 8 cut(s) | 11, 51, 54, 117, 237, 312, 351, 553 |
| Mph1103I | ATGCAT | 1 cut(s) | 514 |
| MseI | TTAA | 3 cut(s) | 336, 362, 536 |
| MspR9I | CCNGG | 1 cut(s) | 63 |
| MvaI | CCWGG | 1 cut(s) | 63 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 67, 227, 292, 404 |
| NdeII | GATC | 3 cut(s) | 25, 470, 502 |
| NlaIII | CATG | 2 cut(s) | 192, 310 |
| NsiI | ATGCAT | 1 cut(s) | 514 |
| NspI | RCATGY | 1 cut(s) | 192 |
| PceI | AGGCCT | 1 cut(s) | 427 |
| PciI | ACATGT | 1 cut(s) | 188 |
| PkrI | GCNGC | 8 cut(s) | 60, 94, 229, 274, 294, 409, 439, 529 |
| PscI | ACATGT | 1 cut(s) | 188 |
| Psp6I | CCWGG | 1 cut(s) | 61 |
| PspGI | CCWGG | 1 cut(s) | 61 |
| PspPI | GGNCC | 1 cut(s) | 69 |
| PsuI | RGATCY | 3 cut(s) | 25, 470, 502 |
| RsaI | GTAC | 2 cut(s) | 118, 498 |
| RsaNI | GTAC | 2 cut(s) | 117, 497 |
| SaqAI | TTAA | 3 cut(s) | 336, 362, 536 |
| SatI | GCNGC | 8 cut(s) | 59, 93, 228, 273, 293, 408, 438, 528 |
| Sau3AI | GATC | 3 cut(s) | 25, 470, 502 |
| Sau96I | GGNCC | 1 cut(s) | 69 |
| ScrFI | CCNGG | 1 cut(s) | 63 |
| SduI | GDGCHC | 1 cut(s) | 466 |
| SfaNI | GCATC | 4 cut(s) | 123, 449, 521, 539 |
| SmlI | CTYRAG | 1 cut(s) | 52 |
| SmoI | CTYRAG | 1 cut(s) | 52 |
| Sse9I | AATT | 2 cut(s) | 333, 483 |
| SseBI | AGGCCT | 1 cut(s) | 427 |
| SspI | AATATT | 1 cut(s) | 256 |
| SspMI | CTAG | 1 cut(s) | 15 |
| StuI | AGGCCT | 1 cut(s) | 427 |
| StyD4I | CCNGG | 1 cut(s) | 61 |
| TaaI | ACNGT | 2 cut(s) | 121, 161 |
| TasI | AATT | 2 cut(s) | 333, 483 |
| TatI | WGTACW | 1 cut(s) | 496 |
| Tru1I | TTAA | 3 cut(s) | 336, 362, 536 |
| Tru9I | TTAA | 3 cut(s) | 336, 362, 536 |
| TseI | GCWGC | 8 cut(s) | 58, 92, 227, 272, 292, 407, 437, 527 |
| TspDTI | ATGAA | 1 cut(s) | 114 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 547 |
| XbaI | TCTAGA | 1 cut(s) | 14 |
| XceI | RCATGY | 1 cut(s) | 192 |
| XspI | CTAG | 1 cut(s) | 15 |
| Zsp2I | ATGCAT | 1 cut(s) | 514 |