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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 867 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 26 |
| AatII | GACGTC | 1 cut(s) | 30 |
| Acc36I | ACCTGC | 1 cut(s) | 901 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 332 |
| AccI | GTMKAC | 2 cut(s) | 18, 90 |
| AclWI | GGATC | 4 cut(s) | 92, 1040, 1261, 1274 |
| AcsI | RAATTY | 1 cut(s) | 742 |
| AcuI | CTGAAG | 1 cut(s) | 243 |
| AcyI | GRCGYC | 1 cut(s) | 27 |
| AfaI | GTAC | 1 cut(s) | 706 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 332, 787 |
| AflIII | ACRYGT | 1 cut(s) | 1014 |
| AgsI | TTSAA | 7 cut(s) | 314, 421, 748, 775, 922, 973, 1184 |
| AjnI | CCWGG | 1 cut(s) | 856 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 345, 377 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 701, 733 |
| AluBI | AGCT | 7 cut(s) | 197, 269, 638, 770, 969, 1139, 1173 |
| AluI | AGCT | 7 cut(s) | 197, 269, 638, 770, 969, 1139, 1173 |
| Alw21I | GWGCWC | 2 cut(s) | 640, 714 |
| AlwI | GGATC | 4 cut(s) | 92, 1040, 1261, 1274 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 720 |
| AoxI | GGCC | 2 cut(s) | 531, 789 |
| ApeKI | GCWGC | 2 cut(s) | 371, 1139 |
| ApoI | RAATTY | 1 cut(s) | 742 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 890, 922 |
| AspS9I | GGNCC | 4 cut(s) | 52, 778, 789, 835 |
| AsuHPI | GGTGA | 1 cut(s) | 574 |
| AsuNHI | GCTAGC | 1 cut(s) | 988 |
| AvaII | GGWCC | 3 cut(s) | 52, 778, 835 |
| BamHI | GGATCC | 1 cut(s) | 1266 |
| BanII | GRGCYC | 2 cut(s) | 340, 640 |
| BbsI | GAAGAC | 1 cut(s) | 123 |
| Bbv12I | GWGCWC | 2 cut(s) | 640, 714 |
| BbvI | GCAGC | 2 cut(s) | 383, 1126 |
| BccI | CCATC | 7 cut(s) | 68, 626, 800, 826, 844, 1100, 1245 |
| BciT130I | CCWGG | 1 cut(s) | 858 |
| BciVI | GTATCC | 1 cut(s) | 1081 |
| BfaI | CTAG | 5 cut(s) | 270, 413, 680, 909, 989 |
| BfuAI | ACCTGC | 1 cut(s) | 901 |
| BfuI | GTATCC | 1 cut(s) | 1081 |
| BisI | GCNGC | 2 cut(s) | 372, 1140 |
| BlsI | GCNGC | 2 cut(s) | 373, 1141 |
| Bme1390I | CCNGG | 1 cut(s) | 858 |
| Bme18I | GGWCC | 3 cut(s) | 52, 778, 835 |
| BmgT120I | GGNCC | 4 cut(s) | 52, 778, 789, 835 |
| BmiI | GGNNCC | 4 cut(s) | 54, 443, 855, 1268 |
| BmrFI | CCNGG | 1 cut(s) | 858 |
| BmsI | GCATC | 3 cut(s) | 25, 482, 1161 |
| BmtI | GCTAGC | 1 cut(s) | 992 |
| BpiI | GAAGAC | 1 cut(s) | 123 |
| BpmI | CTGGAG | 2 cut(s) | 617, 1139 |
| BsaHI | GRCGYC | 1 cut(s) | 27 |
| BsaJI | CCNNGG | 1 cut(s) | 857 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 521, 551, 701, 731 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 332, 787 |
| Bse1I | ACTGG | 3 cut(s) | 152, 908, 1122 |
| BseBI | CCWGG | 1 cut(s) | 858 |
| BseDI | CCNNGG | 1 cut(s) | 857 |
| BseGI | GGATG | 5 cut(s) | 91, 115, 211, 301, 1152 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 332, 787 |
| BseMII | CTCAG | 3 cut(s) | 192, 393, 973 |
| BseNI | ACTGG | 3 cut(s) | 152, 908, 1122 |
| BseRI | GAGGAG | 1 cut(s) | 1215 |
| BseXI | GCAGC | 2 cut(s) | 383, 1126 |
| BshFI | GGCC | 2 cut(s) | 533, 791 |
| BsiHKAI | GWGCWC | 2 cut(s) | 640, 714 |
| BslFI | GGGAC | 1 cut(s) | 1079 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 332, 787 |
| BsmFI | GGGAC | 1 cut(s) | 1079 |
| BsnI | GGCC | 2 cut(s) | 533, 791 |
| Bsp1286I | GDGCHC | 3 cut(s) | 340, 640, 714 |
| Bsp143I | GATC | 3 cut(s) | 97, 1032, 1266 |
| BspANI | GGCC | 2 cut(s) | 533, 791 |
| BspCNI | CTCAG | 3 cut(s) | 193, 392, 972 |
| BspLI | GGNNCC | 4 cut(s) | 54, 443, 855, 1268 |
| BspMI | ACCTGC | 1 cut(s) | 901 |
| BspOI | GCTAGC | 1 cut(s) | 992 |
| BspPI | GGATC | 4 cut(s) | 92, 1040, 1261, 1274 |
| BsrI | ACTGG | 3 cut(s) | 152, 908, 1122 |
| BssECI | CCNNGG | 1 cut(s) | 857 |
| BssMI | GATC | 3 cut(s) | 97, 1032, 1266 |
| BssNI | GRCGYC | 1 cut(s) | 27 |
| Bst2UI | CCWGG | 1 cut(s) | 858 |
| Bst4CI | ACNGT | 1 cut(s) | 928 |
| Bst6I | CTCTTC | 4 cut(s) | 165, 348, 539, 1040 |
| BstACI | GRCGYC | 1 cut(s) | 27 |
| BstC8I | GCNNGC | 3 cut(s) | 195, 267, 990 |
| BstDEI | CTNAG | 7 cut(s) | 201, 379, 447, 480, 616, 825, 959 |
| BstF5I | GGATG | 5 cut(s) | 91, 115, 211, 301, 1152 |
| BstKTI | GATC | 3 cut(s) | 100, 1035, 1269 |
| BstMBI | GATC | 3 cut(s) | 97, 1032, 1266 |
| BstNI | CCWGG | 1 cut(s) | 858 |
| BstNSI | RCATGY | 1 cut(s) | 1018 |
| BstSCI | CCNGG | 1 cut(s) | 856 |
| BstV1I | GCAGC | 2 cut(s) | 383, 1126 |
| BstV2I | GAAGAC | 1 cut(s) | 123 |
| BstX2I | RGATCY | 1 cut(s) | 1266 |
| BstYI | RGATCY | 1 cut(s) | 1266 |
| BsuI | GTATCC | 1 cut(s) | 1081 |
| BsuRI | GGCC | 2 cut(s) | 533, 791 |
| BtgZI | GCGATG | 1 cut(s) | 778 |
| BtsCI | GGATG | 5 cut(s) | 91, 115, 211, 301, 1152 |
| BtsI | GCAGTG | 1 cut(s) | 70 |
| BtsIMutI | CAGTG | 4 cut(s) | 70, 901, 933, 967 |
| BveI | ACCTGC | 1 cut(s) | 901 |
| Cac8I | GCNNGC | 3 cut(s) | 195, 267, 990 |
| CaiI | CAGNNNCTG | 1 cut(s) | 720 |
| Cfr13I | GGNCC | 4 cut(s) | 52, 778, 789, 835 |
| Csp6I | GTAC | 1 cut(s) | 705 |
| CviAII | CATG | 7 cut(s) | 49, 102, 188, 304, 368, 436, 1015 |
| CviQI | GTAC | 1 cut(s) | 705 |
| DdeI | CTNAG | 7 cut(s) | 201, 379, 447, 480, 616, 825, 959 |
| DpnI | GATC | 3 cut(s) | 99, 1034, 1268 |
| DpnII | GATC | 3 cut(s) | 97, 1032, 1266 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 26 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 26 |
| Eam1104I | CTCTTC | 4 cut(s) | 165, 348, 539, 1040 |
| EarI | CTCTTC | 4 cut(s) | 165, 348, 539, 1040 |
| Ecl136II | GAGCTC | 1 cut(s) | 638 |
| Eco147I | AGGCCT | 1 cut(s) | 533 |
| Eco24I | GRGCYC | 2 cut(s) | 340, 640 |
| Eco47I | GGWCC | 3 cut(s) | 52, 778, 835 |
| Eco53kI | GAGCTC | 1 cut(s) | 638 |
| Eco57I | CTGAAG | 1 cut(s) | 243 |
| EcoICRI | GAGCTC | 1 cut(s) | 638 |
| EcoRII | CCWGG | 1 cut(s) | 856 |
| EcoT38I | GRGCYC | 2 cut(s) | 340, 640 |
| FaeI | CATG | 7 cut(s) | 52, 105, 191, 307, 371, 439, 1018 |
| FaqI | GGGAC | 1 cut(s) | 1079 |
| FatI | CATG | 7 cut(s) | 48, 101, 187, 303, 367, 435, 1014 |
| FauNDI | CATATG | 1 cut(s) | 259 |
| FblI | GTMKAC | 2 cut(s) | 18, 90 |
| Fnu4HI | GCNGC | 2 cut(s) | 372, 1140 |
| FokI | GGATG | 5 cut(s) | 98, 122, 218, 308, 1139 |
| FriOI | GRGCYC | 2 cut(s) | 340, 640 |
| Fsp4HI | GCNGC | 2 cut(s) | 372, 1140 |
| FspBI | CTAG | 5 cut(s) | 270, 413, 680, 909, 989 |
| GluI | GCNGC | 2 cut(s) | 372, 1140 |
| GsuI | CTGGAG | 2 cut(s) | 617, 1139 |
| HaeIII | GGCC | 2 cut(s) | 533, 791 |
| Hin1I | GRCGYC | 1 cut(s) | 27 |
| Hin1II | CATG | 7 cut(s) | 52, 105, 191, 307, 371, 439, 1018 |
| HincII | GTYRAC | 1 cut(s) | 804 |
| HindII | GTYRAC | 1 cut(s) | 804 |
| HindIII | AAGCTT | 2 cut(s) | 768, 967 |
| HinfI | GANTC | 3 cut(s) | 344, 996, 1051 |
| HphI | GGTGA | 1 cut(s) | 574 |
| Hpy166II | GTNNAC | 5 cut(s) | 19, 91, 181, 645, 804 |
| Hpy188I | TCNGA | 3 cut(s) | 349, 382, 658 |
| Hpy188III | TCNNGA | 5 cut(s) | 341, 413, 596, 1085, 1167 |
| Hpy8I | GTNNAC | 5 cut(s) | 19, 91, 181, 645, 804 |
| HpyAV | CCTTC | 5 cut(s) | 502, 769, 988, 1072, 1224 |
| HpyCH4III | ACNGT | 1 cut(s) | 928 |
| HpyCH4IV | ACGT | 2 cut(s) | 27, 647 |
| HpyCH4V | TGCA | 6 cut(s) | 38, 371, 403, 473, 896, 1152 |
| HpyF3I | CTNAG | 7 cut(s) | 201, 379, 447, 480, 616, 825, 959 |
| HpySE526I | ACGT | 2 cut(s) | 27, 647 |
| Hsp92I | GRCGYC | 1 cut(s) | 27 |
| Hsp92II | CATG | 7 cut(s) | 52, 105, 191, 307, 371, 439, 1018 |
| Kzo9I | GATC | 3 cut(s) | 97, 1032, 1266 |
| LmnI | GCTCC | 4 cut(s) | 635, 709, 853, 1202 |
| Lsp1109I | GCAGC | 2 cut(s) | 383, 1126 |
| LweI | GCATC | 3 cut(s) | 25, 482, 1161 |
| MaeI | CTAG | 5 cut(s) | 270, 413, 680, 909, 989 |
| MaeII | ACGT | 2 cut(s) | 27, 647 |
| MaeIII | GTNAC | 3 cut(s) | 44, 912, 938 |
| MalI | GATC | 3 cut(s) | 99, 1034, 1268 |
| MboI | GATC | 3 cut(s) | 97, 1032, 1266 |
| MflI | RGATCY | 1 cut(s) | 1266 |
| MhlI | GDGCHC | 3 cut(s) | 340, 640, 714 |
| MluCI | AATT | 4 cut(s) | 127, 742, 782, 1179 |
| MlyI | GAGTC | 2 cut(s) | 338, 1005 |
| MmeI | TCCRAC | 2 cut(s) | 256, 563 |
| MseI | TTAA | 1 cut(s) | 933 |
| MspR9I | CCNGG | 1 cut(s) | 858 |
| MvaI | CCWGG | 1 cut(s) | 858 |
| NdeI | CATATG | 1 cut(s) | 259 |
| NdeII | GATC | 3 cut(s) | 97, 1032, 1266 |
| NheI | GCTAGC | 1 cut(s) | 988 |
| NlaIII | CATG | 7 cut(s) | 52, 105, 191, 307, 371, 439, 1018 |
| NlaIV | GGNNCC | 4 cut(s) | 54, 443, 855, 1268 |
| NmuCI | GTSAC | 2 cut(s) | 912, 938 |
| NspI | RCATGY | 1 cut(s) | 1018 |
| PceI | AGGCCT | 1 cut(s) | 533 |
| PciI | ACATGT | 1 cut(s) | 1014 |
| PfeI | GAWTC | 1 cut(s) | 1051 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 332 |
| PkrI | GCNGC | 2 cut(s) | 373, 1141 |
| PleI | GAGTC | 2 cut(s) | 338, 1004 |
| PpsI | GAGTC | 2 cut(s) | 338, 1004 |
| PscI | ACATGT | 1 cut(s) | 1014 |
| PsiI | TTATAA | 1 cut(s) | 867 |
| Psp124BI | GAGCTC | 1 cut(s) | 640 |
| Psp6I | CCWGG | 1 cut(s) | 856 |
| PspGI | CCWGG | 1 cut(s) | 856 |
| PspN4I | GGNNCC | 4 cut(s) | 54, 443, 855, 1268 |
| PspPI | GGNCC | 4 cut(s) | 52, 778, 789, 835 |
| PstNI | CAGNNNCTG | 1 cut(s) | 720 |
| PsuI | RGATCY | 1 cut(s) | 1266 |
| RsaI | GTAC | 1 cut(s) | 706 |
| RsaNI | GTAC | 1 cut(s) | 705 |
| SacI | GAGCTC | 1 cut(s) | 640 |
| SaqAI | TTAA | 1 cut(s) | 933 |
| SatI | GCNGC | 2 cut(s) | 372, 1140 |
| Sau3AI | GATC | 3 cut(s) | 97, 1032, 1266 |
| Sau96I | GGNCC | 4 cut(s) | 52, 778, 789, 835 |
| SchI | GAGTC | 2 cut(s) | 338, 1005 |
| ScrFI | CCNGG | 1 cut(s) | 858 |
| SduI | GDGCHC | 3 cut(s) | 340, 640, 714 |
| SfaNI | GCATC | 3 cut(s) | 25, 482, 1161 |
| SinI | GGWCC | 3 cut(s) | 52, 778, 835 |
| Sse9I | AATT | 4 cut(s) | 127, 742, 782, 1179 |
| SseBI | AGGCCT | 1 cut(s) | 533 |
| SspMI | CTAG | 5 cut(s) | 270, 413, 680, 909, 989 |
| SstI | GAGCTC | 1 cut(s) | 640 |
| StuI | AGGCCT | 1 cut(s) | 533 |
| StyD4I | CCNGG | 1 cut(s) | 856 |
| TaaI | ACNGT | 1 cut(s) | 928 |
| TaiI | ACGT | 2 cut(s) | 30, 650 |
| TasI | AATT | 4 cut(s) | 127, 742, 782, 1179 |
| TfiI | GAWTC | 1 cut(s) | 1051 |
| Tru1I | TTAA | 1 cut(s) | 933 |
| Tru9I | TTAA | 1 cut(s) | 933 |
| TscAI | CASTG | 4 cut(s) | 70, 908, 933, 967 |
| TseFI | GTSAC | 2 cut(s) | 912, 938 |
| TseI | GCWGC | 2 cut(s) | 371, 1139 |
| Tsp45I | GTSAC | 2 cut(s) | 912, 938 |
| TspDTI | ATGAA | 6 cut(s) | 129, 366, 857, 970, 1058, 1091 |
| TspGWI | ACGGA | 1 cut(s) | 722 |
| TspRI | CASTG | 4 cut(s) | 70, 908, 933, 967 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 332 |
| VpaK11BI | GGWCC | 3 cut(s) | 52, 778, 835 |
| XapI | RAATTY | 1 cut(s) | 742 |
| XbaI | TCTAGA | 1 cut(s) | 412 |
| XceI | RCATGY | 1 cut(s) | 1018 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 433 |
| XmiI | GTMKAC | 2 cut(s) | 18, 90 |
| XspI | CTAG | 5 cut(s) | 270, 413, 680, 909, 989 |
| ZraI | GACGTC | 1 cut(s) | 28 |