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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1001 |
| AccB1I | GGYRCC | 2 cut(s) | 295, 2243 |
| AccBSI | CCGCTC | 1 cut(s) | 49 |
| AciI | CCGC | 1 cut(s) | 47 |
| AclWI | GGATC | 2 cut(s) | 1202, 1215 |
| AcsI | RAATTY | 3 cut(s) | 357, 1049, 1321 |
| AcuI | CTGAAG | 2 cut(s) | 915, 1938 |
| AfaI | GTAC | 7 cut(s) | 146, 392, 492, 1497, 1649, 2236, 2290 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1811, 1944 |
| AflII | CTTAAG | 1 cut(s) | 1262 |
| AflIII | ACRYGT | 2 cut(s) | 415, 1718 |
| AjnI | CCWGG | 3 cut(s) | 1846, 1937, 1943 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 872, 904, 1553, 1585, 2149, 2181 |
| Alw21I | GWGCWC | 1 cut(s) | 2326 |
| Alw26I | GTCTC | 1 cut(s) | 1928 |
| Alw44I | GTGCAC | 1 cut(s) | 2322 |
| AlwI | GGATC | 2 cut(s) | 1202, 1215 |
| AoxI | GGCC | 3 cut(s) | 638, 644, 1802 |
| ApaLI | GTGCAC | 1 cut(s) | 2322 |
| ApoI | RAATTY | 3 cut(s) | 357, 1049, 1321 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2118 |
| AspS9I | GGNCC | 6 cut(s) | 84, 423, 542, 596, 1400, 1941 |
| AsuHPI | GGTGA | 3 cut(s) | 256, 262, 1820 |
| AsuNHI | GCTAGC | 1 cut(s) | 1379 |
| AvaII | GGWCC | 6 cut(s) | 84, 423, 542, 596, 1400, 1941 |
| BaeGI | GKGCMC | 1 cut(s) | 2326 |
| BanI | GGYRCC | 2 cut(s) | 295, 2243 |
| BbsI | GAAGAC | 2 cut(s) | 309, 2207 |
| Bbv12I | GWGCWC | 1 cut(s) | 2326 |
| BccI | CCATC | 9 cut(s) | 74, 449, 980, 1136, 1529, 1598, 1814, 1851, 1972 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2267, 2301 |
| BciT130I | CCWGG | 3 cut(s) | 1848, 1939, 1945 |
| BcoDI | GTCTC | 1 cut(s) | 1928 |
| BfaI | CTAG | 5 cut(s) | 236, 384, 1380, 1530, 2341 |
| BfmI | CTRYAG | 4 cut(s) | 471, 759, 846, 2102 |
| BfrI | CTTAAG | 1 cut(s) | 1262 |
| BglII | AGATCT | 1 cut(s) | 1199 |
| Bme1390I | CCNGG | 3 cut(s) | 1848, 1939, 1945 |
| Bme18I | GGWCC | 6 cut(s) | 84, 423, 542, 596, 1400, 1941 |
| BmgT120I | GGNCC | 6 cut(s) | 84, 423, 542, 596, 1400, 1941 |
| BmrFI | CCNGG | 3 cut(s) | 1848, 1939, 1945 |
| BmtI | GCTAGC | 1 cut(s) | 1383 |
| BpiI | GAAGAC | 2 cut(s) | 309, 2207 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 146, 178 |
| BpmI | CTGGAG | 2 cut(s) | 417, 1431 |
| BpuEI | CTTGAG | 1 cut(s) | 701 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1017, 1146 |
| BsaI | GGTCTC | 1 cut(s) | 1928 |
| BsaJI | CCNNGG | 4 cut(s) | 55, 641, 789, 1190 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 415, 445, 1429, 1459 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1811, 1944 |
| Bse1I | ACTGG | 3 cut(s) | 317, 426, 1448 |
| Bse3DI | GCAATG | 3 cut(s) | 202, 1911, 2077 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1017, 1146 |
| BseBI | CCWGG | 3 cut(s) | 1848, 1939, 1945 |
| BseDI | CCNNGG | 4 cut(s) | 55, 641, 789, 1190 |
| BseGI | GGATG | 9 cut(s) | 85, 1522, 1539, 1579, 1794, 1843, 2135, 2227, 2336 |
| BseJI | GATNNNNATC | 2 cut(s) | 1017, 1146 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1811, 1944 |
| BseMI | GCAATG | 3 cut(s) | 202, 1911, 2077 |
| BseMII | CTCAG | 1 cut(s) | 916 |
| BseNI | ACTGG | 3 cut(s) | 317, 426, 1448 |
| BseRI | GAGGAG | 3 cut(s) | 167, 971, 1100 |
| BseSI | GKGCMC | 1 cut(s) | 2326 |
| BseYI | CCCAGC | 1 cut(s) | 2026 |
| BsgI | GTGCAG | 1 cut(s) | 2297 |
| BshFI | GGCC | 3 cut(s) | 640, 646, 1804 |
| BshNI | GGYRCC | 2 cut(s) | 295, 2243 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2326 |
| BslFI | GGGAC | 6 cut(s) | 97, 436, 555, 609, 1370, 2000 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1811, 1944 |
| BsmAI | GTCTC | 1 cut(s) | 1928 |
| BsmFI | GGGAC | 6 cut(s) | 97, 436, 555, 609, 1370, 2000 |
| BsmI | GAATGC | 1 cut(s) | 1241 |
| BsnI | GGCC | 3 cut(s) | 640, 646, 1804 |
| Bso31I | GGTCTC | 1 cut(s) | 1928 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2326 |
| Bsp143I | GATC | 8 cut(s) | 102, 445, 1018, 1182, 1194, 1199, 1207, 2184 |
| BspACI | CCGC | 1 cut(s) | 47 |
| BspANI | GGCC | 3 cut(s) | 640, 646, 1804 |
| BspCNI | CTCAG | 1 cut(s) | 915 |
| BspMAI | CTGCAG | 2 cut(s) | 475, 763 |
| BspOI | GCTAGC | 1 cut(s) | 1383 |
| BspPI | GGATC | 2 cut(s) | 1202, 1215 |
| BspT107I | GGYRCC | 2 cut(s) | 295, 2243 |
| BspTI | CTTAAG | 1 cut(s) | 1262 |
| BspTNI | GGTCTC | 1 cut(s) | 1928 |
| BsrBI | CCGCTC | 1 cut(s) | 49 |
| BsrDI | GCAATG | 3 cut(s) | 202, 1911, 2077 |
| BsrI | ACTGG | 3 cut(s) | 317, 426, 1448 |
| BssECI | CCNNGG | 4 cut(s) | 55, 641, 789, 1190 |
| BssMI | GATC | 8 cut(s) | 102, 445, 1018, 1182, 1194, 1199, 1207, 2184 |
| BssT1I | CCWWGG | 4 cut(s) | 55, 641, 789, 1190 |
| Bst2UI | CCWGG | 3 cut(s) | 1848, 1939, 1945 |
| Bst4CI | ACNGT | 2 cut(s) | 1705, 1854 |
| Bst6I | CTCTTC | 3 cut(s) | 813, 1069, 2157 |
| BstAFI | CTTAAG | 1 cut(s) | 1262 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1886, 2321 |
| BstC8I | GCNNGC | 3 cut(s) | 381, 648, 1381 |
| BstDEI | CTNAG | 5 cut(s) | 902, 979, 1221, 1326, 1602 |
| BstF5I | GGATG | 9 cut(s) | 85, 1522, 1539, 1579, 1794, 1843, 2135, 2227, 2336 |
| BstKTI | GATC | 8 cut(s) | 105, 448, 1021, 1185, 1197, 1202, 1210, 2187 |
| BstMAI | GTCTC | 1 cut(s) | 1928 |
| BstMBI | GATC | 8 cut(s) | 102, 445, 1018, 1182, 1194, 1199, 1207, 2184 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 662, 719, 1886, 2023, 2042, 2321 |
| BstNI | CCWGG | 3 cut(s) | 1848, 1939, 1945 |
| BstNSI | RCATGY | 4 cut(s) | 419, 629, 1722, 1776 |
| BstSCI | CCNGG | 3 cut(s) | 1846, 1937, 1943 |
| BstSFI | CTRYAG | 4 cut(s) | 471, 759, 846, 2102 |
| BstSLI | GKGCMC | 1 cut(s) | 2326 |
| BstV2I | GAAGAC | 2 cut(s) | 309, 2207 |
| BstX2I | RGATCY | 2 cut(s) | 1199, 1207 |
| BstYI | RGATCY | 2 cut(s) | 1199, 1207 |
| BsuRI | GGCC | 3 cut(s) | 640, 646, 1804 |
| BtgZI | GCGATG | 1 cut(s) | 1904 |
| BtsCI | GGATG | 9 cut(s) | 85, 1522, 1539, 1579, 1794, 1843, 2135, 2227, 2336 |
| BtsI | GCAGTG | 1 cut(s) | 343 |
| BtsIMutI | CAGTG | 2 cut(s) | 343, 1455 |
| Cac8I | GCNNGC | 3 cut(s) | 381, 648, 1381 |
| Cfr13I | GGNCC | 6 cut(s) | 84, 423, 542, 596, 1400, 1941 |
| CsiI | ACCWGGT | 1 cut(s) | 1943 |
| Csp6I | GTAC | 7 cut(s) | 145, 391, 491, 1496, 1648, 2235, 2289 |
| CviAII | CATG | 9 cut(s) | 108, 416, 572, 626, 1028, 1480, 1719, 1773, 2205 |
| CviQI | GTAC | 7 cut(s) | 145, 391, 491, 1496, 1648, 2235, 2289 |
| DdeI | CTNAG | 5 cut(s) | 902, 979, 1221, 1326, 1602 |
| DpnI | GATC | 8 cut(s) | 104, 447, 1020, 1184, 1196, 1201, 1209, 2186 |
| DpnII | GATC | 8 cut(s) | 102, 445, 1018, 1182, 1194, 1199, 1207, 2184 |
| DraI | TTTAAA | 1 cut(s) | 669 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1001 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1001 |
| Eam1104I | CTCTTC | 3 cut(s) | 813, 1069, 2157 |
| EarI | CTCTTC | 3 cut(s) | 813, 1069, 2157 |
| Eco130I | CCWWGG | 4 cut(s) | 55, 641, 789, 1190 |
| Eco147I | AGGCCT | 2 cut(s) | 640, 1804 |
| Eco31I | GGTCTC | 1 cut(s) | 1928 |
| Eco32I | GATATC | 1 cut(s) | 439 |
| Eco47I | GGWCC | 6 cut(s) | 84, 423, 542, 596, 1400, 1941 |
| Eco57I | CTGAAG | 2 cut(s) | 915, 1938 |
| EcoO109I | RGGNCCY | 2 cut(s) | 542, 596 |
| EcoRI | GAATTC | 1 cut(s) | 1321 |
| EcoRII | CCWGG | 3 cut(s) | 1846, 1937, 1943 |
| EcoRV | GATATC | 1 cut(s) | 439 |
| EcoT14I | CCWWGG | 4 cut(s) | 55, 641, 789, 1190 |
| EcoT22I | ATGCAT | 2 cut(s) | 139, 2260 |
| ErhI | CCWWGG | 4 cut(s) | 55, 641, 789, 1190 |
| FaeI | CATG | 9 cut(s) | 111, 419, 575, 629, 1031, 1483, 1722, 1776, 2208 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 518, 550, 572, 604 |
| FaqI | GGGAC | 6 cut(s) | 97, 436, 555, 609, 1370, 2000 |
| FatI | CATG | 9 cut(s) | 107, 415, 571, 625, 1027, 1479, 1718, 1772, 2204 |
| FauI | CCCGC | 1 cut(s) | 54 |
| FokI | GGATG | 9 cut(s) | 92, 1526, 1529, 1586, 1801, 1830, 2122, 2234, 2323 |
| FspBI | CTAG | 5 cut(s) | 236, 384, 1380, 1530, 2341 |
| GsaI | CCCAGC | 1 cut(s) | 2030 |
| GsuI | CTGGAG | 2 cut(s) | 417, 1431 |
| HaeIII | GGCC | 3 cut(s) | 640, 646, 1804 |
| Hin1II | CATG | 9 cut(s) | 111, 419, 575, 629, 1031, 1483, 1722, 1776, 2208 |
| HincII | GTYRAC | 1 cut(s) | 1708 |
| HindII | GTYRAC | 1 cut(s) | 1708 |
| HindIII | AAGCTT | 2 cut(s) | 677, 1955 |
| HinfI | GANTC | 5 cut(s) | 29, 204, 1133, 1294, 1752 |
| HphI | GGTGA | 3 cut(s) | 256, 262, 1820 |
| Hpy166II | GTNNAC | 3 cut(s) | 493, 1708, 2324 |
| Hpy188I | TCNGA | 9 cut(s) | 327, 994, 1012, 1106, 1120, 1187, 1199, 1212, 1299 |
| Hpy188III | TCNNGA | 6 cut(s) | 33, 217, 236, 434, 1417, 1530 |
| Hpy8I | GTNNAC | 3 cut(s) | 493, 1708, 2324 |
| HpyCH4III | ACNGT | 2 cut(s) | 1705, 1854 |
| HpyCH4IV | ACGT | 1 cut(s) | 486 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 662, 719, 1886, 2023, 2042, 2321 |
| HpyF3I | CTNAG | 5 cut(s) | 902, 979, 1221, 1326, 1602 |
| HpySE526I | ACGT | 1 cut(s) | 486 |
| Hsp92II | CATG | 9 cut(s) | 111, 419, 575, 629, 1031, 1483, 1722, 1776, 2208 |
| KflI | GGGWCCC | 1 cut(s) | 596 |
| Kzo9I | GATC | 8 cut(s) | 102, 445, 1018, 1182, 1194, 1199, 1207, 2184 |
| LmnI | GCTCC | 3 cut(s) | 54, 154, 2179 |
| MabI | ACCWGGT | 1 cut(s) | 1943 |
| MaeI | CTAG | 5 cut(s) | 236, 384, 1380, 1530, 2341 |
| MaeII | ACGT | 1 cut(s) | 486 |
| MaeIII | GTNAC | 4 cut(s) | 530, 584, 1063, 1826 |
| MalI | GATC | 8 cut(s) | 104, 447, 1020, 1184, 1196, 1201, 1209, 2186 |
| MbiI | CCGCTC | 1 cut(s) | 49 |
| MboI | GATC | 8 cut(s) | 102, 445, 1018, 1182, 1194, 1199, 1207, 2184 |
| MfeI | CAATTG | 3 cut(s) | 806, 1345, 1899 |
| MflI | RGATCY | 2 cut(s) | 1199, 1207 |
| MhlI | GDGCHC | 1 cut(s) | 2326 |
| MlyI | GAGTC | 1 cut(s) | 38 |
| MmeI | TCCRAC | 2 cut(s) | 1427, 1551 |
| Mph1103I | ATGCAT | 2 cut(s) | 139, 2260 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2118 |
| MseI | TTAA | 7 cut(s) | 120, 567, 621, 668, 1167, 1263, 1682 |
| MspA1I | CMGCKG | 1 cut(s) | 76 |
| MspCI | CTTAAG | 1 cut(s) | 1262 |
| MspR9I | CCNGG | 3 cut(s) | 1848, 1939, 1945 |
| MunI | CAATTG | 3 cut(s) | 806, 1345, 1899 |
| Mva1269I | GAATGC | 1 cut(s) | 1241 |
| MvaI | CCWGG | 3 cut(s) | 1848, 1939, 1945 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 662, 719, 1886, 2023, 2042, 2321 |
| NdeII | GATC | 8 cut(s) | 102, 445, 1018, 1182, 1194, 1199, 1207, 2184 |
| NheI | GCTAGC | 1 cut(s) | 1379 |
| NlaIII | CATG | 9 cut(s) | 111, 419, 575, 629, 1031, 1483, 1722, 1776, 2208 |
| NmuCI | GTSAC | 2 cut(s) | 1063, 1826 |
| NsiI | ATGCAT | 2 cut(s) | 139, 2260 |
| NspI | RCATGY | 4 cut(s) | 419, 629, 1722, 1776 |
| PceI | AGGCCT | 2 cut(s) | 640, 1804 |
| PciI | ACATGT | 2 cut(s) | 415, 1718 |
| PciSI | GCTCTTC | 1 cut(s) | 108 |
| PctI | GAATGC | 1 cut(s) | 1241 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2118 |
| PfeI | GAWTC | 4 cut(s) | 204, 1133, 1294, 1752 |
| PfoI | TCCNGGA | 1 cut(s) | 1846 |
| PleI | GAGTC | 1 cut(s) | 37 |
| PpsI | GAGTC | 1 cut(s) | 37 |
| PpuMI | RGGWCCY | 2 cut(s) | 542, 596 |
| PscI | ACATGT | 2 cut(s) | 415, 1718 |
| Psp5II | RGGWCCY | 2 cut(s) | 542, 596 |
| Psp6I | CCWGG | 3 cut(s) | 1846, 1937, 1943 |
| PspFI | CCCAGC | 1 cut(s) | 2026 |
| PspGI | CCWGG | 3 cut(s) | 1846, 1937, 1943 |
| PspPI | GGNCC | 6 cut(s) | 84, 423, 542, 596, 1400, 1941 |
| PspPPI | RGGWCCY | 2 cut(s) | 542, 596 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1681, 1713 |
| PstI | CTGCAG | 2 cut(s) | 475, 763 |
| PsuI | RGATCY | 2 cut(s) | 1199, 1207 |
| PvuII | CAGCTG | 1 cut(s) | 76 |
| RsaI | GTAC | 7 cut(s) | 146, 392, 492, 1497, 1649, 2236, 2290 |
| RsaNI | GTAC | 7 cut(s) | 145, 391, 491, 1496, 1648, 2235, 2289 |
| SaqAI | TTAA | 7 cut(s) | 120, 567, 621, 668, 1167, 1263, 1682 |
| Sau3AI | GATC | 8 cut(s) | 102, 445, 1018, 1182, 1194, 1199, 1207, 2184 |
| Sau96I | GGNCC | 6 cut(s) | 84, 423, 542, 596, 1400, 1941 |
| SchI | GAGTC | 1 cut(s) | 38 |
| ScrFI | CCNGG | 3 cut(s) | 1848, 1939, 1945 |
| SduI | GDGCHC | 1 cut(s) | 2326 |
| SexAI | ACCWGGT | 1 cut(s) | 1943 |
| SfcI | CTRYAG | 4 cut(s) | 471, 759, 846, 2102 |
| SinI | GGWCC | 6 cut(s) | 84, 423, 542, 596, 1400, 1941 |
| SmlI | CTYRAG | 2 cut(s) | 680, 1262 |
| SmoI | CTYRAG | 2 cut(s) | 680, 1262 |
| SseBI | AGGCCT | 2 cut(s) | 640, 1804 |
| SsiI | CCGC | 1 cut(s) | 47 |
| SspMI | CTAG | 5 cut(s) | 236, 384, 1380, 1530, 2341 |
| StuI | AGGCCT | 2 cut(s) | 640, 1804 |
| StyD4I | CCNGG | 3 cut(s) | 1846, 1937, 1943 |
| StyI | CCWWGG | 4 cut(s) | 55, 641, 789, 1190 |
| TaaI | ACNGT | 2 cut(s) | 1705, 1854 |
| TaiI | ACGT | 1 cut(s) | 489 |
| TaqI | TCGA | 2 cut(s) | 184, 2058 |
| TaqII | GACCGA | 1 cut(s) | 101 |
| TatI | WGTACW | 2 cut(s) | 390, 1647 |
| TfiI | GAWTC | 4 cut(s) | 204, 1133, 1294, 1752 |
| Tru1I | TTAA | 7 cut(s) | 120, 567, 621, 668, 1167, 1263, 1682 |
| Tru9I | TTAA | 7 cut(s) | 120, 567, 621, 668, 1167, 1263, 1682 |
| TscAI | CASTG | 2 cut(s) | 343, 1455 |
| TseFI | GTSAC | 2 cut(s) | 1063, 1826 |
| Tsp45I | GTSAC | 2 cut(s) | 1063, 1826 |
| TspDTI | ATGAA | 6 cut(s) | 196, 213, 1137, 1637, 1805, 1993 |
| TspRI | CASTG | 2 cut(s) | 343, 1455 |
| Vha464I | CTTAAG | 1 cut(s) | 1262 |
| VneI | GTGCAC | 1 cut(s) | 2322 |
| VpaK11BI | GGWCC | 6 cut(s) | 84, 423, 542, 596, 1400, 1941 |
| XapI | RAATTY | 3 cut(s) | 357, 1049, 1321 |
| XbaI | TCTAGA | 2 cut(s) | 235, 1529 |
| XceI | RCATGY | 4 cut(s) | 419, 629, 1722, 1776 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2118 |
| XspI | CTAG | 5 cut(s) | 236, 384, 1380, 1530, 2341 |
| Zsp2I | ATGCAT | 2 cut(s) | 139, 2260 |