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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 174 |
| AccB1I | GGYRCC | 1 cut(s) | 577 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 132 |
| AccBSI | CCGCTC | 1 cut(s) | 974 |
| AccII | CGCG | 1 cut(s) | 1005 |
| AciI | CCGC | 1 cut(s) | 972 |
| AclWI | GGATC | 1 cut(s) | 15 |
| AcoI | YGGCCR | 1 cut(s) | 375 |
| AcuI | CTGAAG | 2 cut(s) | 133, 930 |
| AcyI | GRCGYC | 1 cut(s) | 171 |
| AfaI | GTAC | 2 cut(s) | 216, 397 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 132, 854 |
| AflIII | ACRYGT | 2 cut(s) | 186, 898 |
| AgsI | TTSAA | 3 cut(s) | 495, 551, 905 |
| AjiI | CACGTC | 1 cut(s) | 899 |
| AleI | CACNNNNGTG | 1 cut(s) | 592 |
| AluBI | AGCT | 4 cut(s) | 143, 198, 707, 922 |
| AluI | AGCT | 4 cut(s) | 143, 198, 707, 922 |
| Alw26I | GTCTC | 2 cut(s) | 81, 944 |
| AlwI | GGATC | 1 cut(s) | 15 |
| Ama87I | CYCGRG | 1 cut(s) | 113 |
| AoxI | GGCC | 5 cut(s) | 119, 205, 375, 860, 979 |
| ApeKI | GCWGC | 4 cut(s) | 23, 272, 818, 830 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 546, 792 |
| AspLEI | GCGC | 1 cut(s) | 1007 |
| AspS9I | GGNCC | 2 cut(s) | 135, 749 |
| AsuC2I | CCSGG | 1 cut(s) | 504 |
| AsuHPI | GGTGA | 1 cut(s) | 976 |
| AvaI | CYCGRG | 1 cut(s) | 113 |
| AvaII | GGWCC | 2 cut(s) | 135, 749 |
| BanI | GGYRCC | 1 cut(s) | 577 |
| BbsI | GAAGAC | 1 cut(s) | 671 |
| BbvI | GCAGC | 4 cut(s) | 35, 259, 805, 842 |
| BccI | CCATC | 2 cut(s) | 548, 974 |
| BcnI | CCSGG | 1 cut(s) | 504 |
| BcoDI | GTCTC | 2 cut(s) | 81, 944 |
| BfaI | CTAG | 4 cut(s) | 155, 681, 708, 864 |
| BglII | AGATCT | 1 cut(s) | 839 |
| BisI | GCNGC | 4 cut(s) | 24, 273, 819, 831 |
| BlsI | GCNGC | 4 cut(s) | 25, 274, 820, 832 |
| Bme1390I | CCNGG | 1 cut(s) | 504 |
| Bme18I | GGWCC | 2 cut(s) | 135, 749 |
| BmeT110I | CYCGRG | 1 cut(s) | 113 |
| BmgBI | CACGTC | 1 cut(s) | 899 |
| BmgT120I | GGNCC | 2 cut(s) | 135, 749 |
| BmiI | GGNNCC | 1 cut(s) | 579 |
| BmrFI | CCNGG | 1 cut(s) | 504 |
| BmsI | GCATC | 3 cut(s) | 79, 355, 523 |
| BpiI | GAAGAC | 1 cut(s) | 671 |
| BpuEI | CTTGAG | 3 cut(s) | 374, 575, 877 |
| BpuMI | CCSGG | 1 cut(s) | 504 |
| BsaBI | GATNNNNATC | 1 cut(s) | 965 |
| BsaHI | GRCGYC | 1 cut(s) | 171 |
| BsaJI | CCNNGG | 1 cut(s) | 581 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 59, 89 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 132, 854 |
| Bse1I | ACTGG | 1 cut(s) | 313 |
| Bse8I | GATNNNNATC | 1 cut(s) | 965 |
| BseDI | CCNNGG | 1 cut(s) | 581 |
| BseGI | GGATG | 2 cut(s) | 364, 538 |
| BseJI | GATNNNNATC | 1 cut(s) | 965 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 132, 854 |
| BseMII | CTCAG | 1 cut(s) | 1009 |
| BseNI | ACTGG | 1 cut(s) | 313 |
| BseRI | GAGGAG | 2 cut(s) | 80, 474 |
| BseXI | GCAGC | 4 cut(s) | 35, 259, 805, 842 |
| Bsh1236I | CGCG | 1 cut(s) | 1005 |
| Bsh1285I | CGRYCG | 1 cut(s) | 963 |
| BshFI | GGCC | 5 cut(s) | 121, 207, 377, 862, 981 |
| BshNI | GGYRCC | 1 cut(s) | 577 |
| BsiEI | CGRYCG | 1 cut(s) | 963 |
| BsiHKCI | CYCGRG | 1 cut(s) | 113 |
| BsiSI | CCGG | 2 cut(s) | 503, 917 |
| BslFI | GGGAC | 1 cut(s) | 970 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 132, 854 |
| BsmAI | GTCTC | 2 cut(s) | 81, 944 |
| BsmFI | GGGAC | 1 cut(s) | 970 |
| BsnI | GGCC | 5 cut(s) | 121, 207, 377, 862, 981 |
| BsoBI | CYCGRG | 1 cut(s) | 113 |
| Bsp1407I | TGTACA | 1 cut(s) | 214 |
| Bsp143I | GATC | 4 cut(s) | 7, 839, 907, 960 |
| BspACI | CCGC | 1 cut(s) | 972 |
| BspANI | GGCC | 5 cut(s) | 121, 207, 377, 862, 981 |
| BspCNI | CTCAG | 1 cut(s) | 1008 |
| BspFNI | CGCG | 1 cut(s) | 1005 |
| BspLI | GGNNCC | 1 cut(s) | 579 |
| BspPI | GGATC | 1 cut(s) | 15 |
| BspT107I | GGYRCC | 1 cut(s) | 577 |
| BsrBI | CCGCTC | 1 cut(s) | 974 |
| BsrGI | TGTACA | 1 cut(s) | 214 |
| BsrI | ACTGG | 1 cut(s) | 313 |
| BssECI | CCNNGG | 1 cut(s) | 581 |
| BssMI | GATC | 4 cut(s) | 7, 839, 907, 960 |
| BssNI | GRCGYC | 1 cut(s) | 171 |
| BssT1I | CCWWGG | 1 cut(s) | 581 |
| Bst6I | CTCTTC | 1 cut(s) | 680 |
| BstACI | GRCGYC | 1 cut(s) | 171 |
| BstAUI | TGTACA | 1 cut(s) | 214 |
| BstC8I | GCNNGC | 1 cut(s) | 327 |
| BstDEI | CTNAG | 3 cut(s) | 252, 519, 995 |
| BstF5I | GGATG | 2 cut(s) | 364, 538 |
| BstFNI | CGCG | 1 cut(s) | 1005 |
| BstHHI | GCGC | 1 cut(s) | 1007 |
| BstKTI | GATC | 4 cut(s) | 10, 842, 910, 963 |
| BstMAI | GTCTC | 2 cut(s) | 81, 944 |
| BstMBI | GATC | 4 cut(s) | 7, 839, 907, 960 |
| BstMCI | CGRYCG | 1 cut(s) | 963 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 204, 374, 827, 878, 971 |
| BstNSI | RCATGY | 4 cut(s) | 190, 221, 285, 329 |
| BstSCI | CCNGG | 1 cut(s) | 502 |
| BstUI | CGCG | 1 cut(s) | 1005 |
| BstV1I | GCAGC | 4 cut(s) | 35, 259, 805, 842 |
| BstV2I | GAAGAC | 1 cut(s) | 671 |
| BstX2I | RGATCY | 1 cut(s) | 839 |
| BstYI | RGATCY | 1 cut(s) | 839 |
| BsuRI | GGCC | 5 cut(s) | 121, 207, 377, 862, 981 |
| BtrI | CACGTC | 1 cut(s) | 899 |
| BtsCI | GGATG | 2 cut(s) | 364, 538 |
| Cac8I | GCNNGC | 1 cut(s) | 327 |
| CfoI | GCGC | 1 cut(s) | 1007 |
| Cfr13I | GGNCC | 2 cut(s) | 135, 749 |
| Csp6I | GTAC | 2 cut(s) | 215, 396 |
| CviAII | CATG | 5 cut(s) | 187, 218, 282, 326, 442 |
| CviQI | GTAC | 2 cut(s) | 215, 396 |
| DdeI | CTNAG | 3 cut(s) | 252, 519, 995 |
| DpnI | GATC | 4 cut(s) | 9, 841, 909, 962 |
| DpnII | GATC | 4 cut(s) | 7, 839, 907, 960 |
| EaeI | YGGCCR | 1 cut(s) | 375 |
| Eam1104I | CTCTTC | 1 cut(s) | 680 |
| EarI | CTCTTC | 1 cut(s) | 680 |
| Eco130I | CCWWGG | 1 cut(s) | 581 |
| Eco147I | AGGCCT | 1 cut(s) | 862 |
| Eco47I | GGWCC | 2 cut(s) | 135, 749 |
| Eco57I | CTGAAG | 2 cut(s) | 133, 930 |
| Eco88I | CYCGRG | 1 cut(s) | 113 |
| EcoO109I | RGGNCCY | 1 cut(s) | 749 |
| EcoT14I | CCWWGG | 1 cut(s) | 581 |
| EcoT22I | ATGCAT | 1 cut(s) | 370 |
| ErhI | CCWWGG | 1 cut(s) | 581 |
| FaeI | CATG | 5 cut(s) | 190, 221, 285, 329, 445 |
| FaqI | GGGAC | 1 cut(s) | 970 |
| FatI | CATG | 5 cut(s) | 186, 217, 281, 325, 441 |
| FauNDI | CATATG | 1 cut(s) | 370 |
| Fnu4HI | GCNGC | 4 cut(s) | 24, 273, 819, 831 |
| FokI | GGATG | 2 cut(s) | 371, 545 |
| Fsp4HI | GCNGC | 4 cut(s) | 24, 273, 819, 831 |
| FspBI | CTAG | 4 cut(s) | 155, 681, 708, 864 |
| GlaI | GCGC | 1 cut(s) | 1006 |
| GluI | GCNGC | 4 cut(s) | 24, 273, 819, 831 |
| HaeIII | GGCC | 5 cut(s) | 121, 207, 377, 862, 981 |
| HapII | CCGG | 2 cut(s) | 503, 917 |
| HhaI | GCGC | 1 cut(s) | 1007 |
| Hin1I | GRCGYC | 1 cut(s) | 171 |
| Hin1II | CATG | 5 cut(s) | 190, 221, 285, 329, 445 |
| Hin6I | GCGC | 1 cut(s) | 1005 |
| HinP1I | GCGC | 1 cut(s) | 1005 |
| HincII | GTYRAC | 3 cut(s) | 33, 105, 265 |
| HindII | GTYRAC | 3 cut(s) | 33, 105, 265 |
| HinfI | GANTC | 2 cut(s) | 312, 525 |
| HpaII | CCGG | 2 cut(s) | 503, 917 |
| HphI | GGTGA | 1 cut(s) | 976 |
| Hpy166II | GTNNAC | 3 cut(s) | 33, 105, 265 |
| Hpy188I | TCNGA | 5 cut(s) | 12, 152, 541, 721, 949 |
| Hpy188III | TCNNGA | 7 cut(s) | 80, 138, 391, 456, 551, 894, 905 |
| Hpy8I | GTNNAC | 3 cut(s) | 33, 105, 265 |
| HpyAV | CCTTC | 1 cut(s) | 685 |
| HpyCH4IV | ACGT | 2 cut(s) | 171, 898 |
| HpyCH4V | TGCA | 7 cut(s) | 221, 275, 285, 291, 329, 368, 821 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 204, 374, 827, 878, 971 |
| HpyF3I | CTNAG | 3 cut(s) | 252, 519, 995 |
| HpySE526I | ACGT | 2 cut(s) | 171, 898 |
| Hsp92I | GRCGYC | 1 cut(s) | 171 |
| Hsp92II | CATG | 5 cut(s) | 190, 221, 285, 329, 445 |
| HspAI | GCGC | 1 cut(s) | 1005 |
| Kzo9I | GATC | 4 cut(s) | 7, 839, 907, 960 |
| LmnI | GCTCC | 1 cut(s) | 919 |
| LpnPI | CCDG | 7 cut(s) | 151, 277, 294, 444, 516, 930, 939 |
| Lsp1109I | GCAGC | 4 cut(s) | 35, 259, 805, 842 |
| LweI | GCATC | 3 cut(s) | 79, 355, 523 |
| MaeI | CTAG | 4 cut(s) | 155, 681, 708, 864 |
| MaeII | ACGT | 2 cut(s) | 171, 898 |
| MaeIII | GTNAC | 2 cut(s) | 167, 585 |
| MalI | GATC | 4 cut(s) | 9, 841, 909, 962 |
| MbiI | CCGCTC | 1 cut(s) | 974 |
| MboI | GATC | 4 cut(s) | 7, 839, 907, 960 |
| MboII | GAAGA | 4 cut(s) | 476, 676, 697, 927 |
| MfeI | CAATTG | 1 cut(s) | 163 |
| MflI | RGATCY | 1 cut(s) | 839 |
| MluCI | AATT | 3 cut(s) | 97, 163, 330 |
| Mph1103I | ATGCAT | 1 cut(s) | 370 |
| MroXI | GAANNNNTTC | 2 cut(s) | 546, 792 |
| MseI | TTAA | 4 cut(s) | 180, 201, 243, 435 |
| MslI | CAYNNNNRTG | 2 cut(s) | 446, 592 |
| MspI | CCGG | 2 cut(s) | 503, 917 |
| MspR9I | CCNGG | 1 cut(s) | 504 |
| MunI | CAATTG | 1 cut(s) | 163 |
| MvnI | CGCG | 1 cut(s) | 1005 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 204, 374, 827, 878, 971 |
| NciI | CCSGG | 1 cut(s) | 504 |
| NdeI | CATATG | 1 cut(s) | 370 |
| NdeII | GATC | 4 cut(s) | 7, 839, 907, 960 |
| NlaIII | CATG | 5 cut(s) | 190, 221, 285, 329, 445 |
| NlaIV | GGNNCC | 1 cut(s) | 579 |
| NmeAIII | GCCGAG | 1 cut(s) | 957 |
| NmuCI | GTSAC | 2 cut(s) | 167, 585 |
| NsiI | ATGCAT | 1 cut(s) | 370 |
| NspI | RCATGY | 4 cut(s) | 190, 221, 285, 329 |
| OliI | CACNNNNGTG | 1 cut(s) | 592 |
| PaeI | GCATGC | 1 cut(s) | 329 |
| PceI | AGGCCT | 1 cut(s) | 862 |
| PciI | ACATGT | 1 cut(s) | 186 |
| PdmI | GAANNNNTTC | 2 cut(s) | 546, 792 |
| PfeI | GAWTC | 2 cut(s) | 312, 525 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 132 |
| PkrI | GCNGC | 4 cut(s) | 25, 274, 820, 832 |
| Ple19I | CGATCG | 1 cut(s) | 963 |
| PpuMI | RGGWCCY | 1 cut(s) | 749 |
| PscI | ACATGT | 1 cut(s) | 186 |
| Psp5II | RGGWCCY | 1 cut(s) | 749 |
| PspN4I | GGNNCC | 1 cut(s) | 579 |
| PspPI | GGNCC | 2 cut(s) | 135, 749 |
| PspPPI | RGGWCCY | 1 cut(s) | 749 |
| PsuI | RGATCY | 1 cut(s) | 839 |
| PvuI | CGATCG | 1 cut(s) | 963 |
| RsaI | GTAC | 2 cut(s) | 216, 397 |
| RsaNI | GTAC | 2 cut(s) | 215, 396 |
| RseI | CAYNNNNRTG | 2 cut(s) | 446, 592 |
| SaqAI | TTAA | 4 cut(s) | 180, 201, 243, 435 |
| SatI | GCNGC | 4 cut(s) | 24, 273, 819, 831 |
| Sau3AI | GATC | 4 cut(s) | 7, 839, 907, 960 |
| Sau96I | GGNCC | 2 cut(s) | 135, 749 |
| ScrFI | CCNGG | 1 cut(s) | 504 |
| SfaNI | GCATC | 3 cut(s) | 79, 355, 523 |
| SinI | GGWCC | 2 cut(s) | 135, 749 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 446, 592 |
| SmlI | CTYRAG | 3 cut(s) | 389, 590, 892 |
| SmoI | CTYRAG | 3 cut(s) | 389, 590, 892 |
| SphI | GCATGC | 1 cut(s) | 329 |
| Sse9I | AATT | 3 cut(s) | 97, 163, 330 |
| SseBI | AGGCCT | 1 cut(s) | 862 |
| SsiI | CCGC | 1 cut(s) | 972 |
| SspI | AATATT | 1 cut(s) | 491 |
| SspMI | CTAG | 4 cut(s) | 155, 681, 708, 864 |
| StuI | AGGCCT | 1 cut(s) | 862 |
| StyD4I | CCNGG | 1 cut(s) | 502 |
| StyI | CCWWGG | 1 cut(s) | 581 |
| TaiI | ACGT | 2 cut(s) | 174, 901 |
| TasI | AATT | 3 cut(s) | 97, 163, 330 |
| TatI | WGTACW | 2 cut(s) | 214, 395 |
| TfiI | GAWTC | 2 cut(s) | 312, 525 |
| Tru1I | TTAA | 4 cut(s) | 180, 201, 243, 435 |
| Tru9I | TTAA | 4 cut(s) | 180, 201, 243, 435 |
| TseFI | GTSAC | 2 cut(s) | 167, 585 |
| TseI | GCWGC | 4 cut(s) | 23, 272, 818, 830 |
| Tsp45I | GTSAC | 2 cut(s) | 167, 585 |
| TspDTI | ATGAA | 2 cut(s) | 17, 717 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 132 |
| VpaK11BI | GGWCC | 2 cut(s) | 135, 749 |
| XceI | RCATGY | 4 cut(s) | 190, 221, 285, 329 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 129 |
| XmnI | GAANNNNTTC | 2 cut(s) | 546, 792 |
| XspI | CTAG | 4 cut(s) | 155, 681, 708, 864 |
| ZraI | GACGTC | 1 cut(s) | 172 |
| Zsp2I | ATGCAT | 1 cut(s) | 370 |