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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 186 |
| AclI | AACGTT | 1 cut(s) | 181 |
| AcsI | RAATTY | 1 cut(s) | 128 |
| AcvI | CACGTG | 1 cut(s) | 166 |
| AfaI | GTAC | 1 cut(s) | 124 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 69, 401 |
| AgsI | TTSAA | 4 cut(s) | 134, 367, 509, 515 |
| AjnI | CCWGG | 2 cut(s) | 283, 436 |
| AluBI | AGCT | 3 cut(s) | 49, 206, 268 |
| AluI | AGCT | 3 cut(s) | 49, 206, 268 |
| Alw21I | GWGCWC | 1 cut(s) | 270 |
| AoxI | GGCC | 2 cut(s) | 392, 439 |
| ApeKI | GCWGC | 3 cut(s) | 288, 359, 452 |
| ApoI | RAATTY | 1 cut(s) | 128 |
| AsuHPI | GGTGA | 2 cut(s) | 16, 313 |
| BanII | GRGCYC | 1 cut(s) | 270 |
| BbrPI | CACGTG | 1 cut(s) | 166 |
| BbsI | GAAGAC | 2 cut(s) | 14, 311 |
| Bbv12I | GWGCWC | 1 cut(s) | 270 |
| BbvCI | CCTCAGC | 1 cut(s) | 89 |
| BbvI | GCAGC | 3 cut(s) | 300, 371, 439 |
| BccI | CCATC | 1 cut(s) | 404 |
| BciT130I | CCWGG | 2 cut(s) | 285, 438 |
| BfaI | CTAG | 3 cut(s) | 330, 534, 544 |
| BglII | AGATCT | 1 cut(s) | 326 |
| BisI | GCNGC | 3 cut(s) | 289, 360, 453 |
| BlsI | GCNGC | 3 cut(s) | 290, 361, 454 |
| Bme1390I | CCNGG | 2 cut(s) | 285, 438 |
| BmrFI | CCNGG | 2 cut(s) | 285, 438 |
| BmsI | GCATC | 2 cut(s) | 457, 493 |
| BpiI | GAAGAC | 2 cut(s) | 14, 311 |
| Bpu10I | CCTNAGC | 1 cut(s) | 89 |
| BpuEI | CTTGAG | 1 cut(s) | 254 |
| BsaAI | YACGTR | 1 cut(s) | 166 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 69, 401 |
| Bse118I | RCCGGY | 1 cut(s) | 172 |
| Bse1I | ACTGG | 2 cut(s) | 395, 488 |
| BseBI | CCWGG | 2 cut(s) | 285, 438 |
| BseGI | GGATG | 4 cut(s) | 415, 419, 433, 484 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 69, 401 |
| BseMII | CTCAG | 3 cut(s) | 64, 80, 198 |
| BseNI | ACTGG | 2 cut(s) | 395, 488 |
| BseRI | GAGGAG | 1 cut(s) | 278 |
| BseXI | GCAGC | 3 cut(s) | 300, 371, 439 |
| BshFI | GGCC | 2 cut(s) | 394, 441 |
| BsiHKAI | GWGCWC | 1 cut(s) | 270 |
| BsiSI | CCGG | 1 cut(s) | 173 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 69, 401 |
| BsnI | GGCC | 2 cut(s) | 394, 441 |
| Bsp1286I | GDGCHC | 1 cut(s) | 270 |
| Bsp1407I | TGTACA | 1 cut(s) | 122 |
| Bsp143I | GATC | 1 cut(s) | 326 |
| BspANI | GGCC | 2 cut(s) | 394, 441 |
| BspCNI | CTCAG | 3 cut(s) | 63, 81, 199 |
| BsrFI | RCCGGY | 1 cut(s) | 172 |
| BsrGI | TGTACA | 1 cut(s) | 122 |
| BsrI | ACTGG | 2 cut(s) | 395, 488 |
| BssAI | RCCGGY | 1 cut(s) | 172 |
| BssMI | GATC | 1 cut(s) | 326 |
| Bst2UI | CCWGG | 2 cut(s) | 285, 438 |
| Bst4CI | ACNGT | 3 cut(s) | 142, 195, 215 |
| BstAUI | TGTACA | 1 cut(s) | 122 |
| BstBAI | YACGTR | 1 cut(s) | 166 |
| BstC8I | GCNNGC | 2 cut(s) | 450, 482 |
| BstDEI | CTNAG | 3 cut(s) | 50, 89, 207 |
| BstF5I | GGATG | 4 cut(s) | 415, 419, 433, 484 |
| BstKTI | GATC | 1 cut(s) | 329 |
| BstMBI | GATC | 1 cut(s) | 326 |
| BstNI | CCWGG | 2 cut(s) | 285, 438 |
| BstNSI | RCATGY | 2 cut(s) | 33, 484 |
| BstSCI | CCNGG | 2 cut(s) | 283, 436 |
| BstV1I | GCAGC | 3 cut(s) | 300, 371, 439 |
| BstV2I | GAAGAC | 2 cut(s) | 14, 311 |
| BstX2I | RGATCY | 1 cut(s) | 326 |
| BstYI | RGATCY | 1 cut(s) | 326 |
| BsuRI | GGCC | 2 cut(s) | 394, 441 |
| BtsCI | GGATG | 4 cut(s) | 415, 419, 433, 484 |
| BtsIMutI | CAGTG | 2 cut(s) | 220, 402 |
| Cac8I | GCNNGC | 2 cut(s) | 450, 482 |
| Cfr10I | RCCGGY | 1 cut(s) | 172 |
| Csp6I | GTAC | 1 cut(s) | 123 |
| CviAII | CATG | 3 cut(s) | 26, 30, 481 |
| CviJI | RGCY | 8 cut(s) | 49, 176, 206, 224, 268, 375, 394, 441 |
| CviKI_1 | RGCY | 8 cut(s) | 49, 176, 206, 224, 268, 375, 394, 441 |
| CviQI | GTAC | 1 cut(s) | 123 |
| DdeI | CTNAG | 3 cut(s) | 50, 89, 207 |
| DpnI | GATC | 1 cut(s) | 328 |
| DpnII | GATC | 1 cut(s) | 326 |
| Ecl136II | GAGCTC | 1 cut(s) | 268 |
| Eco24I | GRGCYC | 1 cut(s) | 270 |
| Eco53kI | GAGCTC | 1 cut(s) | 268 |
| Eco72I | CACGTG | 1 cut(s) | 166 |
| EcoICRI | GAGCTC | 1 cut(s) | 268 |
| EcoRII | CCWGG | 2 cut(s) | 283, 436 |
| EcoT22I | ATGCAT | 2 cut(s) | 31, 486 |
| EcoT38I | GRGCYC | 1 cut(s) | 270 |
| FaeI | CATG | 3 cut(s) | 29, 33, 484 |
| FatI | CATG | 3 cut(s) | 25, 29, 480 |
| FauNDI | CATATG | 1 cut(s) | 496 |
| Fnu4HI | GCNGC | 3 cut(s) | 289, 360, 453 |
| FokI | GGATG | 4 cut(s) | 420, 422, 426, 471 |
| FriOI | GRGCYC | 1 cut(s) | 270 |
| Fsp4HI | GCNGC | 3 cut(s) | 289, 360, 453 |
| FspBI | CTAG | 3 cut(s) | 330, 534, 544 |
| GluI | GCNGC | 3 cut(s) | 289, 360, 453 |
| HaeIII | GGCC | 2 cut(s) | 394, 441 |
| HapII | CCGG | 1 cut(s) | 173 |
| Hin1II | CATG | 3 cut(s) | 29, 33, 484 |
| HincII | GTYRAC | 1 cut(s) | 431 |
| HindII | GTYRAC | 1 cut(s) | 431 |
| HpaII | CCGG | 1 cut(s) | 173 |
| HphI | GGTGA | 2 cut(s) | 16, 313 |
| Hpy166II | GTNNAC | 2 cut(s) | 123, 431 |
| Hpy188I | TCNGA | 2 cut(s) | 36, 53 |
| Hpy8I | GTNNAC | 2 cut(s) | 123, 431 |
| HpyAV | CCTTC | 3 cut(s) | 212, 311, 377 |
| HpyCH4III | ACNGT | 3 cut(s) | 142, 195, 215 |
| HpyCH4IV | ACGT | 2 cut(s) | 165, 181 |
| HpyCH4V | TGCA | 7 cut(s) | 29, 60, 163, 242, 359, 484, 500 |
| HpyF3I | CTNAG | 3 cut(s) | 50, 89, 207 |
| HpySE526I | ACGT | 2 cut(s) | 165, 181 |
| Hsp92II | CATG | 3 cut(s) | 29, 33, 484 |
| Kzo9I | GATC | 1 cut(s) | 326 |
| LmnI | GCTCC | 2 cut(s) | 232, 265 |
| LpnPI | CCDG | 8 cut(s) | 186, 270, 297, 323, 408, 423, 450, 501 |
| Lsp1109I | GCAGC | 3 cut(s) | 300, 371, 439 |
| LweI | GCATC | 2 cut(s) | 457, 493 |
| MaeI | CTAG | 3 cut(s) | 330, 534, 544 |
| MaeII | ACGT | 2 cut(s) | 165, 181 |
| MaeIII | GTNAC | 2 cut(s) | 166, 416 |
| MalI | GATC | 1 cut(s) | 328 |
| MboI | GATC | 1 cut(s) | 326 |
| MboII | GAAGA | 6 cut(s) | 19, 288, 316, 336, 527, 534 |
| MfeI | CAATTG | 2 cut(s) | 443, 501 |
| MflI | RGATCY | 1 cut(s) | 326 |
| MhlI | GDGCHC | 1 cut(s) | 270 |
| MluCI | AATT | 6 cut(s) | 128, 157, 294, 443, 501, 510 |
| MnlI | CCTC | 4 cut(s) | 73, 84, 256, 314 |
| Mph1103I | ATGCAT | 2 cut(s) | 31, 486 |
| MseI | TTAA | 1 cut(s) | 423 |
| MslI | CAYNNNNRTG | 1 cut(s) | 83 |
| MspI | CCGG | 1 cut(s) | 173 |
| MspR9I | CCNGG | 2 cut(s) | 285, 438 |
| MunI | CAATTG | 2 cut(s) | 443, 501 |
| MvaI | CCWGG | 2 cut(s) | 285, 438 |
| NdeI | CATATG | 1 cut(s) | 496 |
| NdeII | GATC | 1 cut(s) | 326 |
| NlaIII | CATG | 3 cut(s) | 29, 33, 484 |
| NmuCI | GTSAC | 2 cut(s) | 166, 416 |
| NsiI | ATGCAT | 2 cut(s) | 31, 486 |
| NspI | RCATGY | 2 cut(s) | 33, 484 |
| PaeI | GCATGC | 1 cut(s) | 484 |
| PkrI | GCNGC | 3 cut(s) | 290, 361, 454 |
| PmaCI | CACGTG | 1 cut(s) | 166 |
| PmlI | CACGTG | 1 cut(s) | 166 |
| Ppu21I | YACGTR | 1 cut(s) | 166 |
| PsiI | TTATAA | 1 cut(s) | 186 |
| Psp124BI | GAGCTC | 1 cut(s) | 270 |
| Psp1406I | AACGTT | 1 cut(s) | 181 |
| Psp6I | CCWGG | 2 cut(s) | 283, 436 |
| PspCI | CACGTG | 1 cut(s) | 166 |
| PspGI | CCWGG | 2 cut(s) | 283, 436 |
| PsuI | RGATCY | 1 cut(s) | 326 |
| RsaI | GTAC | 1 cut(s) | 124 |
| RsaNI | GTAC | 1 cut(s) | 123 |
| RseI | CAYNNNNRTG | 1 cut(s) | 83 |
| SacI | GAGCTC | 1 cut(s) | 270 |
| SaqAI | TTAA | 1 cut(s) | 423 |
| SatI | GCNGC | 3 cut(s) | 289, 360, 453 |
| Sau3AI | GATC | 1 cut(s) | 326 |
| ScrFI | CCNGG | 2 cut(s) | 285, 438 |
| SduI | GDGCHC | 1 cut(s) | 270 |
| SfaNI | GCATC | 2 cut(s) | 457, 493 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 83 |
| SmlI | CTYRAG | 1 cut(s) | 269 |
| SmoI | CTYRAG | 1 cut(s) | 269 |
| SphI | GCATGC | 1 cut(s) | 484 |
| Sse9I | AATT | 6 cut(s) | 128, 157, 294, 443, 501, 510 |
| SspMI | CTAG | 3 cut(s) | 330, 534, 544 |
| SstI | GAGCTC | 1 cut(s) | 270 |
| StyD4I | CCNGG | 2 cut(s) | 283, 436 |
| TaaI | ACNGT | 3 cut(s) | 142, 195, 215 |
| TaiI | ACGT | 2 cut(s) | 168, 184 |
| TasI | AATT | 6 cut(s) | 128, 157, 294, 443, 501, 510 |
| TatI | WGTACW | 1 cut(s) | 122 |
| Tru1I | TTAA | 1 cut(s) | 423 |
| Tru9I | TTAA | 1 cut(s) | 423 |
| TscAI | CASTG | 2 cut(s) | 220, 402 |
| TseFI | GTSAC | 2 cut(s) | 166, 416 |
| TseI | GCWGC | 3 cut(s) | 288, 359, 452 |
| Tsp45I | GTSAC | 2 cut(s) | 166, 416 |
| TspDTI | ATGAA | 1 cut(s) | 134 |
| TspRI | CASTG | 2 cut(s) | 220, 402 |
| XapI | RAATTY | 1 cut(s) | 128 |
| XceI | RCATGY | 2 cut(s) | 33, 484 |
| XspI | CTAG | 3 cut(s) | 330, 534, 544 |
| Zsp2I | ATGCAT | 2 cut(s) | 31, 486 |