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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 326 |
| AclWI | GGATC | 2 cut(s) | 54, 403 |
| AfaI | GTAC | 4 cut(s) | 351, 387, 412, 423 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 477 |
| AflIII | ACRYGT | 1 cut(s) | 107 |
| AgsI | TTSAA | 2 cut(s) | 103, 378 |
| AluBI | AGCT | 5 cut(s) | 166, 266, 356, 392, 506 |
| AluI | AGCT | 5 cut(s) | 166, 266, 356, 392, 506 |
| AlwI | GGATC | 2 cut(s) | 54, 403 |
| Ama87I | CYCGRG | 1 cut(s) | 493 |
| AoxI | GGCC | 1 cut(s) | 344 |
| ApeKI | GCWGC | 4 cut(s) | 140, 290, 356, 452 |
| AspS9I | GGNCC | 1 cut(s) | 468 |
| AsuHPI | GGTGA | 1 cut(s) | 213 |
| AvaI | CYCGRG | 1 cut(s) | 493 |
| AvaII | GGWCC | 1 cut(s) | 468 |
| AxyI | CCTNAGG | 1 cut(s) | 65 |
| BbvI | GCAGC | 4 cut(s) | 127, 277, 343, 439 |
| BccI | CCATC | 2 cut(s) | 445, 469 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 299 |
| BisI | GCNGC | 4 cut(s) | 141, 291, 357, 453 |
| BlsI | GCNGC | 4 cut(s) | 142, 292, 358, 454 |
| Bme18I | GGWCC | 1 cut(s) | 468 |
| BmeT110I | CYCGRG | 1 cut(s) | 493 |
| BmgT120I | GGNCC | 1 cut(s) | 468 |
| BmsI | GCATC | 3 cut(s) | 197, 311, 368 |
| BsaAI | YACGTR | 1 cut(s) | 385 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 477 |
| Bse21I | CCTNAGG | 1 cut(s) | 65 |
| BseGI | GGATG | 1 cut(s) | 13 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 477 |
| BseXI | GCAGC | 4 cut(s) | 127, 277, 343, 439 |
| BshFI | GGCC | 1 cut(s) | 346 |
| BsiHKCI | CYCGRG | 1 cut(s) | 493 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 477 |
| BsnI | GGCC | 1 cut(s) | 346 |
| BsoBI | CYCGRG | 1 cut(s) | 493 |
| Bsp1407I | TGTACA | 2 cut(s) | 349, 421 |
| Bsp143I | GATC | 3 cut(s) | 59, 338, 395 |
| BspANI | GGCC | 1 cut(s) | 346 |
| BspPI | GGATC | 2 cut(s) | 54, 403 |
| BsrGI | TGTACA | 2 cut(s) | 349, 421 |
| BssMI | GATC | 3 cut(s) | 59, 338, 395 |
| Bst6I | CTCTTC | 1 cut(s) | 152 |
| BstAUI | TGTACA | 2 cut(s) | 349, 421 |
| BstBAI | YACGTR | 1 cut(s) | 385 |
| BstDEI | CTNAG | 1 cut(s) | 65 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 475 |
| BstF5I | GGATG | 1 cut(s) | 13 |
| BstKTI | GATC | 3 cut(s) | 62, 341, 398 |
| BstMBI | GATC | 3 cut(s) | 59, 338, 395 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 299, 398 |
| BstNSI | RCATGY | 1 cut(s) | 111 |
| BstV1I | GCAGC | 4 cut(s) | 127, 277, 343, 439 |
| BstX2I | RGATCY | 2 cut(s) | 59, 395 |
| BstYI | RGATCY | 2 cut(s) | 59, 395 |
| Bsu36I | CCTNAGG | 1 cut(s) | 65 |
| BsuRI | GGCC | 1 cut(s) | 346 |
| BtsCI | GGATG | 1 cut(s) | 13 |
| Cfr13I | GGNCC | 1 cut(s) | 468 |
| Csp6I | GTAC | 4 cut(s) | 350, 386, 411, 422 |
| CviAII | CATG | 2 cut(s) | 108, 226 |
| CviQI | GTAC | 4 cut(s) | 350, 386, 411, 422 |
| DdeI | CTNAG | 1 cut(s) | 65 |
| DpnI | GATC | 3 cut(s) | 61, 340, 397 |
| DpnII | GATC | 3 cut(s) | 59, 338, 395 |
| Eam1104I | CTCTTC | 1 cut(s) | 152 |
| EarI | CTCTTC | 1 cut(s) | 152 |
| Eco147I | AGGCCT | 1 cut(s) | 346 |
| Eco47I | GGWCC | 1 cut(s) | 468 |
| Eco81I | CCTNAGG | 1 cut(s) | 65 |
| Eco88I | CYCGRG | 1 cut(s) | 493 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 475 |
| EcoO109I | RGGNCCY | 1 cut(s) | 468 |
| FaeI | CATG | 2 cut(s) | 111, 229 |
| FaiI | YATR | 2 cut(s) | 109, 227 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 278, 310 |
| FatI | CATG | 2 cut(s) | 107, 225 |
| FblI | GTMKAC | 1 cut(s) | 326 |
| Fnu4HI | GCNGC | 4 cut(s) | 141, 291, 357, 453 |
| FokI | GGATG | 1 cut(s) | 20 |
| Fsp4HI | GCNGC | 4 cut(s) | 141, 291, 357, 453 |
| GluI | GCNGC | 4 cut(s) | 141, 291, 357, 453 |
| HaeIII | GGCC | 1 cut(s) | 346 |
| Hin1II | CATG | 2 cut(s) | 111, 229 |
| HindIII | AAGCTT | 1 cut(s) | 164 |
| HphI | GGTGA | 1 cut(s) | 213 |
| Hpy166II | GTNNAC | 1 cut(s) | 327 |
| Hpy188I | TCNGA | 1 cut(s) | 193 |
| Hpy188III | TCNNGA | 2 cut(s) | 15, 26 |
| Hpy8I | GTNNAC | 1 cut(s) | 327 |
| HpyAV | CCTTC | 4 cut(s) | 12, 23, 280, 442 |
| HpyCH4IV | ACGT | 1 cut(s) | 384 |
| HpyCH4V | TGCA | 3 cut(s) | 55, 359, 455 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 299, 398 |
| HpyF3I | CTNAG | 1 cut(s) | 65 |
| HpySE526I | ACGT | 1 cut(s) | 384 |
| Hsp92II | CATG | 2 cut(s) | 111, 229 |
| Kzo9I | GATC | 3 cut(s) | 59, 338, 395 |
| LmnI | GCTCC | 1 cut(s) | 503 |
| LpnPI | CCDG | 3 cut(s) | 360, 378, 492 |
| Lsp1109I | GCAGC | 4 cut(s) | 127, 277, 343, 439 |
| LweI | GCATC | 3 cut(s) | 197, 311, 368 |
| MaeII | ACGT | 1 cut(s) | 384 |
| MaeIII | GTNAC | 1 cut(s) | 92 |
| MalI | GATC | 3 cut(s) | 61, 340, 397 |
| MboI | GATC | 3 cut(s) | 59, 338, 395 |
| MboII | GAAGA | 2 cut(s) | 169, 191 |
| MfeI | CAATTG | 1 cut(s) | 76 |
| MflI | RGATCY | 2 cut(s) | 59, 395 |
| MluCI | AATT | 1 cut(s) | 76 |
| MmeI | TCCRAC | 2 cut(s) | 291, 391 |
| MnlI | CCTC | 3 cut(s) | 153, 237, 481 |
| MseI | TTAA | 4 cut(s) | 39, 150, 168, 296 |
| MunI | CAATTG | 1 cut(s) | 76 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 299, 398 |
| NdeII | GATC | 3 cut(s) | 59, 338, 395 |
| NlaIII | CATG | 2 cut(s) | 111, 229 |
| NmuCI | GTSAC | 1 cut(s) | 92 |
| NspI | RCATGY | 1 cut(s) | 111 |
| PceI | AGGCCT | 1 cut(s) | 346 |
| PciI | ACATGT | 1 cut(s) | 107 |
| PkrI | GCNGC | 4 cut(s) | 142, 292, 358, 454 |
| Ppu21I | YACGTR | 1 cut(s) | 385 |
| PpuMI | RGGWCCY | 1 cut(s) | 468 |
| PscI | ACATGT | 1 cut(s) | 107 |
| Psp5II | RGGWCCY | 1 cut(s) | 468 |
| PspPI | GGNCC | 1 cut(s) | 468 |
| PspPPI | RGGWCCY | 1 cut(s) | 468 |
| PsuI | RGATCY | 2 cut(s) | 59, 395 |
| RsaI | GTAC | 4 cut(s) | 351, 387, 412, 423 |
| RsaNI | GTAC | 4 cut(s) | 350, 386, 411, 422 |
| SaqAI | TTAA | 4 cut(s) | 39, 150, 168, 296 |
| SatI | GCNGC | 4 cut(s) | 141, 291, 357, 453 |
| Sau3AI | GATC | 3 cut(s) | 59, 338, 395 |
| Sau96I | GGNCC | 1 cut(s) | 468 |
| SfaNI | GCATC | 3 cut(s) | 197, 311, 368 |
| SinI | GGWCC | 1 cut(s) | 468 |
| Sse9I | AATT | 1 cut(s) | 76 |
| SseBI | AGGCCT | 1 cut(s) | 346 |
| StuI | AGGCCT | 1 cut(s) | 346 |
| TaiI | ACGT | 1 cut(s) | 387 |
| TaqI | TCGA | 1 cut(s) | 14 |
| TasI | AATT | 1 cut(s) | 76 |
| TatI | WGTACW | 3 cut(s) | 349, 410, 421 |
| Tru1I | TTAA | 4 cut(s) | 39, 150, 168, 296 |
| Tru9I | TTAA | 4 cut(s) | 39, 150, 168, 296 |
| TseFI | GTSAC | 1 cut(s) | 92 |
| TseI | GCWGC | 4 cut(s) | 140, 290, 356, 452 |
| Tsp45I | GTSAC | 1 cut(s) | 92 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| VpaK11BI | GGWCC | 1 cut(s) | 468 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 475 |
| XceI | RCATGY | 1 cut(s) | 111 |
| XmiI | GTMKAC | 1 cut(s) | 326 |