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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 689 |
| Acc36I | ACCTGC | 2 cut(s) | 689, 917 |
| AccB1I | GGYRCC | 1 cut(s) | 868 |
| AccI | GTMKAC | 1 cut(s) | 548 |
| AclWI | GGATC | 2 cut(s) | 407, 812 |
| AcoI | YGGCCR | 1 cut(s) | 982 |
| AcsI | RAATTY | 1 cut(s) | 664 |
| AcuI | CTGAAG | 1 cut(s) | 835 |
| AfaI | GTAC | 5 cut(s) | 246, 397, 451, 532, 890 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 239, 563 |
| AflIII | ACRYGT | 1 cut(s) | 971 |
| AgsI | TTSAA | 6 cut(s) | 347, 809, 880, 910, 922, 967 |
| AhlI | ACTAGT | 1 cut(s) | 533 |
| AjnI | CCWGG | 2 cut(s) | 232, 820 |
| AluBI | AGCT | 7 cut(s) | 16, 61, 68, 737, 959, 991, 1054 |
| AluI | AGCT | 7 cut(s) | 16, 61, 68, 737, 959, 991, 1054 |
| Alw21I | GWGCWC | 1 cut(s) | 961 |
| Alw26I | GTCTC | 1 cut(s) | 1052 |
| AlwI | GGATC | 2 cut(s) | 407, 812 |
| AoxI | GGCC | 1 cut(s) | 982 |
| ApeKI | GCWGC | 3 cut(s) | 16, 61, 737 |
| ApoI | RAATTY | 1 cut(s) | 664 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 917 |
| AsuHPI | GGTGA | 3 cut(s) | 16, 109, 416 |
| AsuNHI | GCTAGC | 2 cut(s) | 64, 287 |
| BalI | TGGCCA | 1 cut(s) | 984 |
| BanI | GGYRCC | 1 cut(s) | 868 |
| BanII | GRGCYC | 1 cut(s) | 961 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 514, 546 |
| BauI | CACGAG | 1 cut(s) | 188 |
| BbsI | GAAGAC | 2 cut(s) | 438, 974 |
| Bbv12I | GWGCWC | 1 cut(s) | 961 |
| BbvI | GCAGC | 3 cut(s) | 3, 48, 724 |
| BccI | CCATC | 3 cut(s) | 377, 395, 947 |
| BciT130I | CCWGG | 2 cut(s) | 234, 822 |
| BciVI | GTATCC | 1 cut(s) | 240 |
| BcoDI | GTCTC | 1 cut(s) | 1052 |
| BcuI | ACTAGT | 1 cut(s) | 533 |
| BfaI | CTAG | 4 cut(s) | 65, 75, 288, 534 |
| BfuAI | ACCTGC | 2 cut(s) | 689, 917 |
| BfuI | GTATCC | 1 cut(s) | 240 |
| BisI | GCNGC | 3 cut(s) | 17, 62, 738 |
| BlpI | GCTNAGC | 1 cut(s) | 69 |
| BlsI | GCNGC | 3 cut(s) | 18, 63, 739 |
| Bme1390I | CCNGG | 2 cut(s) | 234, 822 |
| BmiI | GGNNCC | 2 cut(s) | 826, 870 |
| BmrFI | CCNGG | 2 cut(s) | 234, 822 |
| BmrI | ACTGGG | 1 cut(s) | 475 |
| BmsI | GCATC | 3 cut(s) | 151, 609, 771 |
| BmtI | GCTAGC | 2 cut(s) | 68, 291 |
| BmuI | ACTGGG | 1 cut(s) | 475 |
| BpiI | GAAGAC | 2 cut(s) | 438, 974 |
| BpmI | CTGGAG | 1 cut(s) | 1076 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 69 |
| BpuEI | CTTGAG | 1 cut(s) | 120 |
| BsaBI | GATNNNNATC | 1 cut(s) | 411 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 452, 482 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 239, 563 |
| Bse1I | ACTGG | 3 cut(s) | 274, 470, 481 |
| Bse3DI | GCAATG | 1 cut(s) | 1050 |
| Bse8I | GATNNNNATC | 1 cut(s) | 411 |
| BseBI | CCWGG | 2 cut(s) | 234, 822 |
| BseGI | GGATG | 5 cut(s) | 199, 388, 574, 624, 958 |
| BseJI | GATNNNNATC | 1 cut(s) | 411 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 239, 563 |
| BseMI | GCAATG | 1 cut(s) | 1050 |
| BseMII | CTCAG | 1 cut(s) | 60 |
| BseNI | ACTGG | 3 cut(s) | 274, 470, 481 |
| BseRI | GAGGAG | 4 cut(s) | 26, 171, 473, 659 |
| BseXI | GCAGC | 3 cut(s) | 3, 48, 724 |
| BsgI | GTGCAG | 3 cut(s) | 326, 331, 537 |
| BshFI | GGCC | 1 cut(s) | 984 |
| BshNI | GGYRCC | 1 cut(s) | 868 |
| BsiHKAI | GWGCWC | 1 cut(s) | 961 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 239, 563 |
| BsmAI | GTCTC | 1 cut(s) | 1052 |
| BsnI | GGCC | 1 cut(s) | 984 |
| Bsp1286I | GDGCHC | 1 cut(s) | 961 |
| Bsp1407I | TGTACA | 1 cut(s) | 888 |
| Bsp143I | GATC | 3 cut(s) | 412, 817, 935 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 69 |
| BspANI | GGCC | 1 cut(s) | 984 |
| BspCNI | CTCAG | 1 cut(s) | 61 |
| BspLI | GGNNCC | 2 cut(s) | 826, 870 |
| BspMI | ACCTGC | 2 cut(s) | 689, 917 |
| BspOI | GCTAGC | 2 cut(s) | 68, 291 |
| BspPI | GGATC | 2 cut(s) | 407, 812 |
| BspT107I | GGYRCC | 1 cut(s) | 868 |
| BsrDI | GCAATG | 1 cut(s) | 1050 |
| BsrGI | TGTACA | 1 cut(s) | 888 |
| BsrI | ACTGG | 3 cut(s) | 274, 470, 481 |
| BssMI | GATC | 3 cut(s) | 412, 817, 935 |
| BssSI | CACGAG | 1 cut(s) | 188 |
| Bst2BI | CACGAG | 1 cut(s) | 188 |
| Bst2UI | CCWGG | 2 cut(s) | 234, 822 |
| Bst4CI | ACNGT | 1 cut(s) | 249 |
| Bst6I | CTCTTC | 1 cut(s) | 363 |
| BstAUI | TGTACA | 1 cut(s) | 888 |
| BstC8I | GCNNGC | 4 cut(s) | 66, 289, 688, 786 |
| BstDEI | CTNAG | 2 cut(s) | 69, 672 |
| BstF5I | GGATG | 5 cut(s) | 199, 388, 574, 624, 958 |
| BstKTI | GATC | 3 cut(s) | 415, 820, 938 |
| BstMAI | GTCTC | 1 cut(s) | 1052 |
| BstMBI | GATC | 3 cut(s) | 412, 817, 935 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 25, 34, 70, 725, 734, 785 |
| BstNI | CCWGG | 2 cut(s) | 234, 822 |
| BstNSI | RCATGY | 2 cut(s) | 629, 975 |
| BstSCI | CCNGG | 2 cut(s) | 232, 820 |
| BstV1I | GCAGC | 3 cut(s) | 3, 48, 724 |
| BstV2I | GAAGAC | 2 cut(s) | 438, 974 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 715 |
| BsuI | GTATCC | 1 cut(s) | 240 |
| BsuRI | GGCC | 1 cut(s) | 984 |
| BtsCI | GGATG | 5 cut(s) | 199, 388, 574, 624, 958 |
| BtsI | GCAGTG | 3 cut(s) | 280, 314, 319 |
| BtsIMutI | CAGTG | 4 cut(s) | 280, 314, 319, 945 |
| BveI | ACCTGC | 2 cut(s) | 689, 917 |
| Cac8I | GCNNGC | 4 cut(s) | 66, 289, 688, 786 |
| Csp6I | GTAC | 5 cut(s) | 245, 396, 450, 531, 889 |
| CviAII | CATG | 3 cut(s) | 626, 972, 1026 |
| CviQI | GTAC | 5 cut(s) | 245, 396, 450, 531, 889 |
| DdeI | CTNAG | 2 cut(s) | 69, 672 |
| DpnI | GATC | 3 cut(s) | 414, 819, 937 |
| DpnII | GATC | 3 cut(s) | 412, 817, 935 |
| EaeI | YGGCCR | 1 cut(s) | 982 |
| Eam1104I | CTCTTC | 1 cut(s) | 363 |
| EarI | CTCTTC | 1 cut(s) | 363 |
| Ecl136II | GAGCTC | 1 cut(s) | 959 |
| Eco24I | GRGCYC | 1 cut(s) | 961 |
| Eco53kI | GAGCTC | 1 cut(s) | 959 |
| Eco57I | CTGAAG | 1 cut(s) | 835 |
| EcoICRI | GAGCTC | 1 cut(s) | 959 |
| EcoRII | CCWGG | 2 cut(s) | 232, 820 |
| EcoT38I | GRGCYC | 1 cut(s) | 961 |
| FaeI | CATG | 3 cut(s) | 629, 975, 1029 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 703, 735 |
| FatI | CATG | 3 cut(s) | 625, 971, 1025 |
| FblI | GTMKAC | 1 cut(s) | 548 |
| Fnu4HI | GCNGC | 3 cut(s) | 17, 62, 738 |
| FokI | GGATG | 5 cut(s) | 206, 395, 581, 631, 965 |
| FriOI | GRGCYC | 1 cut(s) | 961 |
| Fsp4HI | GCNGC | 3 cut(s) | 17, 62, 738 |
| FspBI | CTAG | 4 cut(s) | 65, 75, 288, 534 |
| GluI | GCNGC | 3 cut(s) | 17, 62, 738 |
| GsuI | CTGGAG | 1 cut(s) | 1076 |
| HaeIII | GGCC | 1 cut(s) | 984 |
| Hin1II | CATG | 3 cut(s) | 629, 975, 1029 |
| HinfI | GANTC | 5 cut(s) | 362, 602, 635, 918, 1067 |
| HphI | GGTGA | 3 cut(s) | 16, 109, 416 |
| Hpy166II | GTNNAC | 3 cut(s) | 185, 245, 549 |
| Hpy188I | TCNGA | 5 cut(s) | 367, 607, 640, 862, 1004 |
| Hpy188III | TCNNGA | 3 cut(s) | 137, 355, 880 |
| Hpy8I | GTNNAC | 3 cut(s) | 185, 245, 549 |
| HpyAV | CCTTC | 4 cut(s) | 493, 749, 793, 859 |
| HpyCH4III | ACNGT | 1 cut(s) | 249 |
| HpyCH4V | TGCA | 9 cut(s) | 164, 307, 312, 554, 622, 629, 740, 779, 1043 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 25, 34, 70, 725, 734, 785 |
| HpyF3I | CTNAG | 2 cut(s) | 69, 672 |
| Hsp92II | CATG | 3 cut(s) | 629, 975, 1029 |
| Kzo9I | GATC | 3 cut(s) | 412, 817, 935 |
| LmnI | GCTCC | 4 cut(s) | 13, 58, 769, 956 |
| Lsp1109I | GCAGC | 3 cut(s) | 3, 48, 724 |
| LweI | GCATC | 3 cut(s) | 151, 609, 771 |
| MaeI | CTAG | 4 cut(s) | 65, 75, 288, 534 |
| MaeIII | GTNAC | 3 cut(s) | 265, 314, 845 |
| MalI | GATC | 3 cut(s) | 414, 819, 937 |
| MboI | GATC | 3 cut(s) | 412, 817, 935 |
| MboII | GAAGA | 6 cut(s) | 335, 380, 443, 623, 922, 979 |
| MfeI | CAATTG | 2 cut(s) | 630, 831 |
| MhlI | GDGCHC | 1 cut(s) | 961 |
| MlsI | TGGCCA | 1 cut(s) | 984 |
| MluCI | AATT | 5 cut(s) | 111, 419, 630, 664, 831 |
| MluNI | TGGCCA | 1 cut(s) | 984 |
| MlyI | GAGTC | 2 cut(s) | 371, 1061 |
| MmeI | TCCRAC | 4 cut(s) | 204, 345, 450, 982 |
| Mox20I | TGGCCA | 1 cut(s) | 984 |
| MroXI | GAANNNNTTC | 1 cut(s) | 917 |
| MscI | TGGCCA | 1 cut(s) | 984 |
| MseI | TTAA | 2 cut(s) | 105, 207 |
| Msp20I | TGGCCA | 1 cut(s) | 984 |
| MspR9I | CCNGG | 2 cut(s) | 234, 822 |
| MunI | CAATTG | 2 cut(s) | 630, 831 |
| MvaI | CCWGG | 2 cut(s) | 234, 822 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 25, 34, 70, 725, 734, 785 |
| NdeII | GATC | 3 cut(s) | 412, 817, 935 |
| NheI | GCTAGC | 2 cut(s) | 64, 287 |
| NlaIII | CATG | 3 cut(s) | 629, 975, 1029 |
| NlaIV | GGNNCC | 2 cut(s) | 826, 870 |
| NmuCI | GTSAC | 2 cut(s) | 314, 845 |
| NspI | RCATGY | 2 cut(s) | 629, 975 |
| PaqCI | CACCTGC | 1 cut(s) | 689 |
| PciI | ACATGT | 1 cut(s) | 971 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 435 |
| PdmI | GAANNNNTTC | 1 cut(s) | 917 |
| PfeI | GAWTC | 3 cut(s) | 602, 635, 918 |
| PflFI | GACNNNGTC | 1 cut(s) | 679 |
| PfoI | TCCNGGA | 2 cut(s) | 232, 820 |
| PkrI | GCNGC | 3 cut(s) | 18, 63, 739 |
| PleI | GAGTC | 2 cut(s) | 370, 1061 |
| PpsI | GAGTC | 2 cut(s) | 370, 1061 |
| PscI | ACATGT | 1 cut(s) | 971 |
| Psp124BI | GAGCTC | 1 cut(s) | 961 |
| Psp6I | CCWGG | 2 cut(s) | 232, 820 |
| PspGI | CCWGG | 2 cut(s) | 232, 820 |
| PspN4I | GGNNCC | 2 cut(s) | 826, 870 |
| PsyI | GACNNNGTC | 1 cut(s) | 679 |
| RsaI | GTAC | 5 cut(s) | 246, 397, 451, 532, 890 |
| RsaNI | GTAC | 5 cut(s) | 245, 396, 450, 531, 889 |
| SacI | GAGCTC | 1 cut(s) | 961 |
| SaqAI | TTAA | 2 cut(s) | 105, 207 |
| SatI | GCNGC | 3 cut(s) | 17, 62, 738 |
| Sau3AI | GATC | 3 cut(s) | 412, 817, 935 |
| SchI | GAGTC | 2 cut(s) | 371, 1061 |
| ScrFI | CCNGG | 2 cut(s) | 234, 822 |
| SduI | GDGCHC | 1 cut(s) | 961 |
| SfaNI | GCATC | 3 cut(s) | 151, 609, 771 |
| SmlI | CTYRAG | 1 cut(s) | 135 |
| SmoI | CTYRAG | 1 cut(s) | 135 |
| SpeI | ACTAGT | 1 cut(s) | 533 |
| Sse9I | AATT | 5 cut(s) | 111, 419, 630, 664, 831 |
| SspMI | CTAG | 4 cut(s) | 65, 75, 288, 534 |
| SstI | GAGCTC | 1 cut(s) | 961 |
| StyD4I | CCNGG | 2 cut(s) | 232, 820 |
| TaaI | ACNGT | 1 cut(s) | 249 |
| TasI | AATT | 5 cut(s) | 111, 419, 630, 664, 831 |
| TatI | WGTACW | 3 cut(s) | 244, 395, 888 |
| TfiI | GAWTC | 3 cut(s) | 602, 635, 918 |
| Tru1I | TTAA | 2 cut(s) | 105, 207 |
| Tru9I | TTAA | 2 cut(s) | 105, 207 |
| TscAI | CASTG | 4 cut(s) | 280, 314, 319, 945 |
| TseFI | GTSAC | 2 cut(s) | 314, 845 |
| TseI | GCWGC | 3 cut(s) | 16, 61, 737 |
| Tsp45I | GTSAC | 2 cut(s) | 314, 845 |
| TspDTI | ATGAA | 4 cut(s) | 47, 210, 624, 1014 |
| TspRI | CASTG | 4 cut(s) | 280, 314, 319, 945 |
| Tth111I | GACNNNGTC | 1 cut(s) | 679 |
| XapI | RAATTY | 1 cut(s) | 664 |
| XceI | RCATGY | 2 cut(s) | 629, 975 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 835 |
| XmiI | GTMKAC | 1 cut(s) | 548 |
| XmnI | GAANNNNTTC | 1 cut(s) | 917 |
| XspI | CTAG | 4 cut(s) | 65, 75, 288, 534 |