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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 800 |
| AclWI | GGATC | 2 cut(s) | 303, 945 |
| AcoI | YGGCCR | 2 cut(s) | 97, 846 |
| AcuI | CTGAAG | 2 cut(s) | 671, 993 |
| AflII | CTTAAG | 1 cut(s) | 200 |
| AflIII | ACRYGT | 1 cut(s) | 752 |
| AgsI | TTSAA | 7 cut(s) | 25, 439, 490, 539, 682, 966, 1193 |
| AjnI | CCWGG | 1 cut(s) | 1080 |
| AluBI | AGCT | 7 cut(s) | 41, 87, 103, 205, 431, 649, 759 |
| AluI | AGCT | 7 cut(s) | 41, 87, 103, 205, 431, 649, 759 |
| AlwI | GGATC | 2 cut(s) | 303, 945 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1074 |
| AoxI | GGCC | 5 cut(s) | 97, 407, 846, 899, 980 |
| ApeKI | GCWGC | 6 cut(s) | 656, 759, 970, 1068, 1139, 1142 |
| AsuC2I | CCSGG | 1 cut(s) | 833 |
| AsuHPI | GGTGA | 2 cut(s) | 701, 1040 |
| BalI | TGGCCA | 1 cut(s) | 99 |
| BbsI | GAAGAC | 2 cut(s) | 872, 1117 |
| BbvCI | CCTCAGC | 1 cut(s) | 699 |
| BbvI | GCAGC | 6 cut(s) | 643, 746, 982, 1080, 1126, 1129 |
| BccI | CCATC | 3 cut(s) | 62, 230, 1025 |
| BciT130I | CCWGG | 1 cut(s) | 1082 |
| BcnI | CCSGG | 1 cut(s) | 833 |
| BfaI | CTAG | 3 cut(s) | 635, 1040, 1152 |
| BfmI | CTRYAG | 1 cut(s) | 760 |
| BfrI | CTTAAG | 1 cut(s) | 200 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 979 |
| BglII | AGATCT | 1 cut(s) | 1055 |
| BisI | GCNGC | 6 cut(s) | 657, 760, 971, 1069, 1140, 1143 |
| BlsI | GCNGC | 6 cut(s) | 658, 761, 972, 1070, 1141, 1144 |
| Bme1390I | CCNGG | 2 cut(s) | 833, 1082 |
| BmrFI | CCNGG | 2 cut(s) | 833, 1082 |
| BmsI | GCATC | 2 cut(s) | 115, 367 |
| BpiI | GAAGAC | 2 cut(s) | 872, 1117 |
| BpmI | CTGGAG | 1 cut(s) | 939 |
| Bpu10I | CCTNAGC | 3 cut(s) | 13, 618, 699 |
| BpuMI | CCSGG | 1 cut(s) | 833 |
| BsaJI | CCNNGG | 2 cut(s) | 601, 623 |
| Bse1I | ACTGG | 1 cut(s) | 784 |
| BseBI | CCWGG | 1 cut(s) | 1082 |
| BseDI | CCNNGG | 2 cut(s) | 601, 623 |
| BseGI | GGATG | 4 cut(s) | 73, 382, 396, 841 |
| BseMII | CTCAG | 2 cut(s) | 471, 690 |
| BseNI | ACTGG | 1 cut(s) | 784 |
| BseRI | GAGGAG | 2 cut(s) | 368, 835 |
| BseXI | GCAGC | 6 cut(s) | 643, 746, 982, 1080, 1126, 1129 |
| BsgI | GTGCAG | 1 cut(s) | 1087 |
| BshFI | GGCC | 5 cut(s) | 99, 409, 848, 901, 982 |
| BsiSI | CCGG | 1 cut(s) | 833 |
| BslFI | GGGAC | 1 cut(s) | 785 |
| BsmFI | GGGAC | 1 cut(s) | 785 |
| BsnI | GGCC | 5 cut(s) | 99, 409, 848, 901, 982 |
| Bsp143I | GATC | 4 cut(s) | 295, 937, 1055, 1195 |
| BspACI | CCGC | 1 cut(s) | 800 |
| BspANI | GGCC | 5 cut(s) | 99, 409, 848, 901, 982 |
| BspCNI | CTCAG | 2 cut(s) | 472, 691 |
| BspMAI | CTGCAG | 1 cut(s) | 764 |
| BspPI | GGATC | 2 cut(s) | 303, 945 |
| BspTI | CTTAAG | 1 cut(s) | 200 |
| BsrI | ACTGG | 1 cut(s) | 784 |
| BssECI | CCNNGG | 2 cut(s) | 601, 623 |
| BssMI | GATC | 4 cut(s) | 295, 937, 1055, 1195 |
| BssT1I | CCWWGG | 2 cut(s) | 601, 623 |
| Bst2UI | CCWGG | 1 cut(s) | 1082 |
| Bst4CI | ACNGT | 3 cut(s) | 112, 455, 854 |
| Bst6I | CTCTTC | 1 cut(s) | 557 |
| BstAFI | CTTAAG | 1 cut(s) | 200 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1074 |
| BstC8I | GCNNGC | 3 cut(s) | 101, 794, 798 |
| BstDEI | CTNAG | 4 cut(s) | 13, 480, 618, 699 |
| BstF5I | GGATG | 4 cut(s) | 73, 382, 396, 841 |
| BstKTI | GATC | 4 cut(s) | 298, 940, 1058, 1198 |
| BstMBI | GATC | 4 cut(s) | 295, 937, 1055, 1195 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 806, 979, 1074 |
| BstNI | CCWGG | 1 cut(s) | 1082 |
| BstNSI | RCATGY | 3 cut(s) | 756, 800, 1221 |
| BstSCI | CCNGG | 2 cut(s) | 831, 1080 |
| BstSFI | CTRYAG | 1 cut(s) | 760 |
| BstV1I | GCAGC | 6 cut(s) | 643, 746, 982, 1080, 1126, 1129 |
| BstV2I | GAAGAC | 2 cut(s) | 872, 1117 |
| BstX2I | RGATCY | 2 cut(s) | 937, 1055 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 420 |
| BstYI | RGATCY | 2 cut(s) | 937, 1055 |
| BsuRI | GGCC | 5 cut(s) | 99, 409, 848, 901, 982 |
| BtsCI | GGATG | 4 cut(s) | 73, 382, 396, 841 |
| Cac8I | GCNNGC | 3 cut(s) | 101, 794, 798 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1074 |
| CseI | GACGC | 1 cut(s) | 1013 |
| CsiI | ACCWGGT | 1 cut(s) | 1080 |
| CviAII | CATG | 6 cut(s) | 186, 753, 789, 797, 1184, 1218 |
| DdeI | CTNAG | 4 cut(s) | 13, 480, 618, 699 |
| DpnI | GATC | 4 cut(s) | 297, 939, 1057, 1197 |
| DpnII | GATC | 4 cut(s) | 295, 937, 1055, 1195 |
| DraI | TTTAAA | 2 cut(s) | 81, 1000 |
| EaeI | YGGCCR | 2 cut(s) | 97, 846 |
| Eam1104I | CTCTTC | 1 cut(s) | 557 |
| EarI | CTCTTC | 1 cut(s) | 557 |
| Eco130I | CCWWGG | 2 cut(s) | 601, 623 |
| Eco147I | AGGCCT | 2 cut(s) | 409, 901 |
| Eco57I | CTGAAG | 2 cut(s) | 671, 993 |
| EcoRII | CCWGG | 1 cut(s) | 1080 |
| EcoT14I | CCWWGG | 2 cut(s) | 601, 623 |
| EcoT22I | ATGCAT | 1 cut(s) | 382 |
| ErhI | CCWWGG | 2 cut(s) | 601, 623 |
| FaeI | CATG | 6 cut(s) | 189, 756, 792, 800, 1187, 1221 |
| FaqI | GGGAC | 1 cut(s) | 785 |
| FatI | CATG | 6 cut(s) | 185, 752, 788, 796, 1183, 1217 |
| FauNDI | CATATG | 1 cut(s) | 249 |
| Fnu4HI | GCNGC | 6 cut(s) | 657, 760, 971, 1069, 1140, 1143 |
| FokI | GGATG | 4 cut(s) | 80, 389, 403, 848 |
| Fsp4HI | GCNGC | 6 cut(s) | 657, 760, 971, 1069, 1140, 1143 |
| FspBI | CTAG | 3 cut(s) | 635, 1040, 1152 |
| GluI | GCNGC | 6 cut(s) | 657, 760, 971, 1069, 1140, 1143 |
| GsuI | CTGGAG | 1 cut(s) | 939 |
| HaeIII | GGCC | 5 cut(s) | 99, 409, 848, 901, 982 |
| HapII | CCGG | 1 cut(s) | 833 |
| HgaI | GACGC | 1 cut(s) | 1013 |
| Hin1II | CATG | 6 cut(s) | 189, 756, 792, 800, 1187, 1221 |
| HincII | GTYRAC | 2 cut(s) | 736, 1168 |
| HindII | GTYRAC | 2 cut(s) | 736, 1168 |
| HinfI | GANTC | 5 cut(s) | 33, 182, 549, 568, 783 |
| HpaII | CCGG | 1 cut(s) | 833 |
| HphI | GGTGA | 2 cut(s) | 701, 1040 |
| Hpy166II | GTNNAC | 4 cut(s) | 255, 321, 736, 1168 |
| Hpy188I | TCNGA | 3 cut(s) | 481, 573, 1012 |
| Hpy188III | TCNNGA | 2 cut(s) | 553, 956 |
| Hpy8I | GTNNAC | 4 cut(s) | 255, 321, 736, 1168 |
| HpyAV | CCTTC | 8 cut(s) | 286, 355, 622, 646, 710, 1038, 1156, 1172 |
| HpyCH4III | ACNGT | 3 cut(s) | 112, 455, 854 |
| HpyCH4V | TGCA | 7 cut(s) | 128, 213, 380, 762, 792, 1068, 1077 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 806, 979, 1074 |
| HpyF3I | CTNAG | 4 cut(s) | 13, 480, 618, 699 |
| Hsp92II | CATG | 6 cut(s) | 189, 756, 792, 800, 1187, 1221 |
| Kzo9I | GATC | 4 cut(s) | 295, 937, 1055, 1195 |
| LmnI | GCTCC | 3 cut(s) | 17, 71, 239 |
| Lsp1109I | GCAGC | 6 cut(s) | 643, 746, 982, 1080, 1126, 1129 |
| LweI | GCATC | 2 cut(s) | 115, 367 |
| MabI | ACCWGGT | 1 cut(s) | 1080 |
| MaeI | CTAG | 3 cut(s) | 635, 1040, 1152 |
| MaeIII | GTNAC | 3 cut(s) | 455, 526, 1213 |
| MalI | GATC | 4 cut(s) | 297, 939, 1057, 1197 |
| MboI | GATC | 4 cut(s) | 295, 937, 1055, 1195 |
| MflI | RGATCY | 2 cut(s) | 937, 1055 |
| MlsI | TGGCCA | 1 cut(s) | 99 |
| MluCI | AATT | 3 cut(s) | 167, 259, 269 |
| MluNI | TGGCCA | 1 cut(s) | 99 |
| MlyI | GAGTC | 2 cut(s) | 176, 558 |
| MmeI | TCCRAC | 2 cut(s) | 97, 476 |
| Mox20I | TGGCCA | 1 cut(s) | 99 |
| Mph1103I | ATGCAT | 1 cut(s) | 382 |
| MscI | TGGCCA | 1 cut(s) | 99 |
| MseI | TTAA | 6 cut(s) | 80, 201, 906, 999, 1061, 1098 |
| MslI | CAYNNNNRTG | 2 cut(s) | 190, 385 |
| Msp20I | TGGCCA | 1 cut(s) | 99 |
| MspCI | CTTAAG | 1 cut(s) | 200 |
| MspI | CCGG | 1 cut(s) | 833 |
| MspR9I | CCNGG | 2 cut(s) | 833, 1082 |
| MvaI | CCWGG | 1 cut(s) | 1082 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 806, 979, 1074 |
| NciI | CCSGG | 1 cut(s) | 833 |
| NdeI | CATATG | 1 cut(s) | 249 |
| NdeII | GATC | 4 cut(s) | 295, 937, 1055, 1195 |
| NlaIII | CATG | 6 cut(s) | 189, 756, 792, 800, 1187, 1221 |
| NmuCI | GTSAC | 3 cut(s) | 455, 526, 1213 |
| NsiI | ATGCAT | 1 cut(s) | 382 |
| NspI | RCATGY | 3 cut(s) | 756, 800, 1221 |
| PaeI | GCATGC | 1 cut(s) | 800 |
| PceI | AGGCCT | 2 cut(s) | 409, 901 |
| PciI | ACATGT | 1 cut(s) | 752 |
| PfeI | GAWTC | 3 cut(s) | 33, 568, 783 |
| PkrI | GCNGC | 6 cut(s) | 658, 761, 972, 1070, 1141, 1144 |
| PleI | GAGTC | 2 cut(s) | 176, 557 |
| PpsI | GAGTC | 2 cut(s) | 176, 557 |
| PscI | ACATGT | 1 cut(s) | 752 |
| Psp6I | CCWGG | 1 cut(s) | 1080 |
| PspGI | CCWGG | 1 cut(s) | 1080 |
| PstI | CTGCAG | 1 cut(s) | 764 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1074 |
| PsuI | RGATCY | 2 cut(s) | 937, 1055 |
| RseI | CAYNNNNRTG | 2 cut(s) | 190, 385 |
| SaqAI | TTAA | 6 cut(s) | 80, 201, 906, 999, 1061, 1098 |
| SatI | GCNGC | 6 cut(s) | 657, 760, 971, 1069, 1140, 1143 |
| Sau3AI | GATC | 4 cut(s) | 295, 937, 1055, 1195 |
| SchI | GAGTC | 2 cut(s) | 176, 558 |
| ScrFI | CCNGG | 2 cut(s) | 833, 1082 |
| SexAI | ACCWGGT | 1 cut(s) | 1080 |
| SfaNI | GCATC | 2 cut(s) | 115, 367 |
| SfcI | CTRYAG | 1 cut(s) | 760 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 190, 385 |
| SmlI | CTYRAG | 1 cut(s) | 200 |
| SmoI | CTYRAG | 1 cut(s) | 200 |
| SphI | GCATGC | 1 cut(s) | 800 |
| Sse9I | AATT | 3 cut(s) | 167, 259, 269 |
| SseBI | AGGCCT | 2 cut(s) | 409, 901 |
| SsiI | CCGC | 1 cut(s) | 800 |
| SspI | AATATT | 3 cut(s) | 534, 948, 962 |
| SspMI | CTAG | 3 cut(s) | 635, 1040, 1152 |
| StuI | AGGCCT | 2 cut(s) | 409, 901 |
| StyD4I | CCNGG | 2 cut(s) | 831, 1080 |
| StyI | CCWWGG | 2 cut(s) | 601, 623 |
| TaaI | ACNGT | 3 cut(s) | 112, 455, 854 |
| TaqI | TCGA | 2 cut(s) | 714, 1108 |
| TasI | AATT | 3 cut(s) | 167, 259, 269 |
| TfiI | GAWTC | 3 cut(s) | 33, 568, 783 |
| Tru1I | TTAA | 6 cut(s) | 80, 201, 906, 999, 1061, 1098 |
| Tru9I | TTAA | 6 cut(s) | 80, 201, 906, 999, 1061, 1098 |
| TseFI | GTSAC | 3 cut(s) | 455, 526, 1213 |
| TseI | GCWGC | 6 cut(s) | 656, 759, 970, 1068, 1139, 1142 |
| Tsp45I | GTSAC | 3 cut(s) | 455, 526, 1213 |
| TspDTI | ATGAA | 6 cut(s) | 305, 374, 417, 575, 803, 1188 |
| Vha464I | CTTAAG | 1 cut(s) | 200 |
| XceI | RCATGY | 3 cut(s) | 756, 800, 1221 |
| XspI | CTAG | 3 cut(s) | 635, 1040, 1152 |
| Zsp2I | ATGCAT | 1 cut(s) | 382 |