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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 942, 1938 |
| Acc36I | ACCTGC | 1 cut(s) | 1499 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1247 |
| AccI | GTMKAC | 2 cut(s) | 417, 969 |
| AciI | CCGC | 1 cut(s) | 20 |
| AclWI | GGATC | 4 cut(s) | 764, 1394, 2111, 2153 |
| AcoI | YGGCCR | 2 cut(s) | 1444, 1564 |
| AcsI | RAATTY | 3 cut(s) | 755, 1085, 1813 |
| AcuI | CTGAAG | 1 cut(s) | 1511 |
| AfaI | GTAC | 4 cut(s) | 302, 531, 1027, 1606 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 391, 779, 1247, 1562, 1858 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 379 |
| AjnI | CCWGG | 3 cut(s) | 1441, 1831, 1927 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 70, 102, 1260, 1292 |
| AleI | CACNNNNGTG | 1 cut(s) | 1412 |
| Alw21I | GWGCWC | 2 cut(s) | 1489, 1785 |
| Alw26I | GTCTC | 1 cut(s) | 1097 |
| Alw44I | GTGCAC | 1 cut(s) | 1485 |
| AlwI | GGATC | 4 cut(s) | 764, 1394, 2111, 2153 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1791, 1955 |
| AoxI | GGCC | 3 cut(s) | 1444, 1564, 1741 |
| ApaLI | GTGCAC | 1 cut(s) | 1485 |
| ApeKI | GCWGC | 2 cut(s) | 1151, 2210 |
| ApoI | RAATTY | 3 cut(s) | 755, 1085, 1813 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1961, 1993 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 681, 852, 1814 |
| AspS9I | GGNCC | 4 cut(s) | 1716, 1741, 1849, 1906 |
| AsuHPI | GGTGA | 5 cut(s) | 418, 593, 684, 729, 853 |
| AvaII | GGWCC | 3 cut(s) | 1716, 1849, 1906 |
| AxyI | CCTNAGG | 1 cut(s) | 1362 |
| BaeGI | GKGCMC | 1 cut(s) | 1489 |
| BalI | TGGCCA | 2 cut(s) | 1446, 1566 |
| BanII | GRGCYC | 1 cut(s) | 1255 |
| BbsI | GAAGAC | 3 cut(s) | 147, 966, 1044 |
| Bbv12I | GWGCWC | 2 cut(s) | 1489, 1785 |
| BbvI | GCAGC | 2 cut(s) | 1138, 2197 |
| BccI | CCATC | 3 cut(s) | 1489, 1529, 1697 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 614, 648 |
| BciT130I | CCWGG | 3 cut(s) | 1443, 1833, 1929 |
| BclI | TGATCA | 2 cut(s) | 52, 981 |
| BcoDI | GTCTC | 1 cut(s) | 1097 |
| BfaI | CTAG | 7 cut(s) | 32, 999, 1185, 1532, 1667, 1980, 2277 |
| BfmI | CTRYAG | 1 cut(s) | 1137 |
| BfuAI | ACCTGC | 1 cut(s) | 1499 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 41 |
| BglII | AGATCT | 1 cut(s) | 571 |
| BisI | GCNGC | 2 cut(s) | 1152, 2211 |
| BlsI | GCNGC | 2 cut(s) | 1153, 2212 |
| BmcAI | AGTACT | 1 cut(s) | 1606 |
| Bme1390I | CCNGG | 3 cut(s) | 1443, 1833, 1929 |
| Bme18I | GGWCC | 3 cut(s) | 1716, 1849, 1906 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 379 |
| BmgT120I | GGNCC | 4 cut(s) | 1716, 1741, 1849, 1906 |
| BmiI | GGNNCC | 4 cut(s) | 855, 876, 1358, 1926 |
| BmrFI | CCNGG | 3 cut(s) | 1443, 1833, 1929 |
| BmsI | GCATC | 9 cut(s) | 123, 133, 283, 466, 496, 985, 997, 1142, 1582 |
| BpiI | GAAGAC | 3 cut(s) | 147, 966, 1044 |
| BpmI | CTGGAG | 3 cut(s) | 185, 861, 2210 |
| BpuEI | CTTGAG | 2 cut(s) | 846, 1532 |
| Bsa29I | ATCGAT | 2 cut(s) | 127, 131 |
| BsaJI | CCNNGG | 6 cut(s) | 304, 695, 1441, 1832, 1896, 1928 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 211, 241, 314, 344, 1625, 1655, 2293, 2323 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 391, 779, 1247, 1562, 1858 |
| Bse1I | ACTGG | 7 cut(s) | 202, 455, 878, 1073, 1454, 1979, 2193 |
| Bse21I | CCTNAGG | 1 cut(s) | 1362 |
| Bse3DI | GCAATG | 2 cut(s) | 68, 1632 |
| BseBI | CCWGG | 3 cut(s) | 1443, 1833, 1929 |
| BseCI | ATCGAT | 2 cut(s) | 127, 131 |
| BseDI | CCNNGG | 6 cut(s) | 304, 695, 1441, 1832, 1896, 1928 |
| BseGI | GGATG | 4 cut(s) | 274, 1036, 1473, 1597 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 391, 779, 1247, 1562, 1858 |
| BseMI | GCAATG | 2 cut(s) | 68, 1632 |
| BseMII | CTCAG | 5 cut(s) | 270, 939, 1308, 1376, 2044 |
| BseNI | ACTGG | 7 cut(s) | 202, 455, 878, 1073, 1454, 1979, 2193 |
| BseRI | GAGGAG | 4 cut(s) | 712, 2286, 2314, 2317 |
| BseSI | GKGCMC | 1 cut(s) | 1489 |
| BseXI | GCAGC | 2 cut(s) | 1138, 2197 |
| BseYI | CCCAGC | 1 cut(s) | 1709 |
| BsgI | GTGCAG | 2 cut(s) | 133, 1797 |
| Bsh1285I | CGRYCG | 2 cut(s) | 131, 243 |
| BshFI | GGCC | 3 cut(s) | 1446, 1566, 1743 |
| BshVI | ATCGAT | 2 cut(s) | 127, 131 |
| BsiEI | CGRYCG | 2 cut(s) | 131, 243 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1489, 1785 |
| BsiSI | CCGG | 2 cut(s) | 36, 137 |
| BslFI | GGGAC | 2 cut(s) | 367, 2150 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 391, 779, 1247, 1562, 1858 |
| BsmAI | GTCTC | 1 cut(s) | 1097 |
| BsmFI | GGGAC | 2 cut(s) | 367, 2150 |
| BsmI | GAATGC | 1 cut(s) | 2223 |
| BsnI | GGCC | 3 cut(s) | 1446, 1566, 1743 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1255, 1489, 1785 |
| Bsp19I | CCATGG | 1 cut(s) | 304 |
| BspACI | CCGC | 1 cut(s) | 20 |
| BspANI | GGCC | 3 cut(s) | 1446, 1566, 1743 |
| BspCNI | CTCAG | 5 cut(s) | 271, 940, 1307, 1375, 2043 |
| BspDI | ATCGAT | 2 cut(s) | 127, 131 |
| BspHI | TCATGA | 2 cut(s) | 685, 1117 |
| BspLI | GGNNCC | 4 cut(s) | 855, 876, 1358, 1926 |
| BspMI | ACCTGC | 1 cut(s) | 1499 |
| BspPI | GGATC | 4 cut(s) | 764, 1394, 2111, 2153 |
| BsrDI | GCAATG | 2 cut(s) | 68, 1632 |
| BsrI | ACTGG | 7 cut(s) | 202, 455, 878, 1073, 1454, 1979, 2193 |
| BssECI | CCNNGG | 6 cut(s) | 304, 695, 1441, 1832, 1896, 1928 |
| BssT1I | CCWWGG | 2 cut(s) | 304, 1896 |
| Bst2UI | CCWGG | 3 cut(s) | 1443, 1833, 1929 |
| Bst4CI | ACNGT | 5 cut(s) | 15, 223, 241, 1414, 1999 |
| Bst6I | CTCTTC | 7 cut(s) | 717, 843, 1086, 1095, 1263, 1385, 2111 |
| BstC8I | GCNNGC | 6 cut(s) | 152, 214, 868, 1448, 1568, 2061 |
| BstDEI | CTNAG | 9 cut(s) | 279, 559, 948, 964, 1294, 1362, 1481, 1869, 2030 |
| BstDSI | CCRYGG | 1 cut(s) | 304 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 389 |
| BstF5I | GGATG | 4 cut(s) | 274, 1036, 1473, 1597 |
| BstMAI | GTCTC | 1 cut(s) | 1097 |
| BstMCI | CGRYCG | 2 cut(s) | 131, 243 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 41, 872 |
| BstNI | CCWGG | 3 cut(s) | 1443, 1833, 1929 |
| BstNSI | RCATGY | 1 cut(s) | 2089 |
| BstSCI | CCNGG | 3 cut(s) | 1441, 1831, 1927 |
| BstSFI | CTRYAG | 1 cut(s) | 1137 |
| BstSLI | GKGCMC | 1 cut(s) | 1489 |
| BstV1I | GCAGC | 2 cut(s) | 1138, 2197 |
| BstV2I | GAAGAC | 3 cut(s) | 147, 966, 1044 |
| BstX2I | RGATCY | 3 cut(s) | 571, 769, 2158 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 636, 1903 |
| BstYI | RGATCY | 3 cut(s) | 571, 769, 2158 |
| Bsu15I | ATCGAT | 2 cut(s) | 127, 131 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1362 |
| BsuRI | GGCC | 3 cut(s) | 1446, 1566, 1743 |
| BsuTUI | ATCGAT | 2 cut(s) | 127, 131 |
| BtgI | CCRYGG | 1 cut(s) | 304 |
| BtsCI | GGATG | 4 cut(s) | 274, 1036, 1473, 1597 |
| BtsIMutI | CAGTG | 6 cut(s) | 885, 991, 1487, 1972, 2004, 2038 |
| BveI | ACCTGC | 1 cut(s) | 1499 |
| Cac8I | GCNNGC | 6 cut(s) | 152, 214, 868, 1448, 1568, 2061 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1791, 1955 |
| CciI | TCATGA | 2 cut(s) | 685, 1117 |
| Cfr13I | GGNCC | 4 cut(s) | 1716, 1741, 1849, 1906 |
| ClaI | ATCGAT | 2 cut(s) | 127, 131 |
| Csp6I | GTAC | 4 cut(s) | 301, 530, 1026, 1605 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 484, 519 |
| CviQI | GTAC | 4 cut(s) | 301, 530, 1026, 1605 |
| DdeI | CTNAG | 9 cut(s) | 279, 559, 948, 964, 1294, 1362, 1481, 1869, 2030 |
| DraI | TTTAAA | 1 cut(s) | 1504 |
| DriI | GACNNNNNGTC | 1 cut(s) | 379 |
| EaeI | YGGCCR | 2 cut(s) | 1444, 1564 |
| Eam1104I | CTCTTC | 7 cut(s) | 717, 843, 1086, 1095, 1263, 1385, 2111 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 379 |
| EarI | CTCTTC | 7 cut(s) | 717, 843, 1086, 1095, 1263, 1385, 2111 |
| EciI | GGCGGA | 1 cut(s) | 9 |
| Eco130I | CCWWGG | 2 cut(s) | 304, 1896 |
| Eco24I | GRGCYC | 1 cut(s) | 1255 |
| Eco47I | GGWCC | 3 cut(s) | 1716, 1849, 1906 |
| Eco57I | CTGAAG | 1 cut(s) | 1511 |
| Eco81I | CCTNAGG | 1 cut(s) | 1362 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 389 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1741 |
| EcoRII | CCWGG | 3 cut(s) | 1441, 1831, 1927 |
| EcoT14I | CCWWGG | 2 cut(s) | 304, 1896 |
| EcoT38I | GRGCYC | 1 cut(s) | 1255 |
| ErhI | CCWWGG | 2 cut(s) | 304, 1896 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1415, 1447 |
| FaqI | GGGAC | 2 cut(s) | 367, 2150 |
| FauNDI | CATATG | 1 cut(s) | 2230 |
| FbaI | TGATCA | 2 cut(s) | 52, 981 |
| FblI | GTMKAC | 2 cut(s) | 417, 969 |
| Fnu4HI | GCNGC | 2 cut(s) | 1152, 2211 |
| FokI | GGATG | 4 cut(s) | 261, 1043, 1480, 1604 |
| FriOI | GRGCYC | 1 cut(s) | 1255 |
| Fsp4HI | GCNGC | 2 cut(s) | 1152, 2211 |
| FspBI | CTAG | 7 cut(s) | 32, 999, 1185, 1532, 1667, 1980, 2277 |
| GluI | GCNGC | 2 cut(s) | 1152, 2211 |
| GsaI | CCCAGC | 1 cut(s) | 1713 |
| GsuI | CTGGAG | 3 cut(s) | 185, 861, 2210 |
| HaeIII | GGCC | 3 cut(s) | 1446, 1566, 1743 |
| HapII | CCGG | 2 cut(s) | 36, 137 |
| HincII | GTYRAC | 1 cut(s) | 1875 |
| HindII | GTYRAC | 1 cut(s) | 1875 |
| HindIII | AAGCTT | 2 cut(s) | 488, 2038 |
| HpaII | CCGG | 2 cut(s) | 36, 137 |
| HphI | GGTGA | 5 cut(s) | 418, 593, 684, 729, 853 |
| Hpy188I | TCNGA | 8 cut(s) | 52, 91, 257, 483, 595, 1264, 1297, 1729 |
| Hpy99I | CGWCG | 1 cut(s) | 235 |
| HpyAV | CCTTC | 5 cut(s) | 780, 1156, 1840, 2059, 2143 |
| HpyCH4III | ACNGT | 5 cut(s) | 15, 223, 241, 1414, 1999 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 41, 872 |
| HpyF3I | CTNAG | 9 cut(s) | 279, 559, 948, 964, 1294, 1362, 1481, 1869, 2030 |
| Ksp22I | TGATCA | 2 cut(s) | 52, 981 |
| LmnI | GCTCC | 6 cut(s) | 232, 880, 1633, 1706, 1924, 2273 |
| Lsp1109I | GCAGC | 2 cut(s) | 1138, 2197 |
| LweI | GCATC | 9 cut(s) | 123, 133, 283, 466, 496, 985, 997, 1142, 1582 |
| MaeI | CTAG | 7 cut(s) | 32, 999, 1185, 1532, 1667, 1980, 2277 |
| MaeIII | GTNAC | 4 cut(s) | 581, 884, 1983, 2009 |
| MflI | RGATCY | 3 cut(s) | 571, 769, 2158 |
| MhlI | GDGCHC | 3 cut(s) | 1255, 1489, 1785 |
| MlsI | TGGCCA | 2 cut(s) | 1446, 1566 |
| MluCI | AATT | 9 cut(s) | 81, 312, 387, 549, 565, 755, 825, 1085, 1813 |
| MluNI | TGGCCA | 2 cut(s) | 1446, 1566 |
| MlyI | GAGTC | 2 cut(s) | 1561, 2076 |
| MmeI | TCCRAC | 4 cut(s) | 881, 1171, 1564, 1634 |
| Mox20I | TGGCCA | 2 cut(s) | 1446, 1566 |
| MroXI | GAANNNNTTC | 3 cut(s) | 681, 852, 1814 |
| MscI | TGGCCA | 2 cut(s) | 1446, 1566 |
| MseI | TTAA | 7 cut(s) | 195, 792, 1422, 1503, 1695, 2004, 2043 |
| MslI | CAYNNNNRTG | 3 cut(s) | 515, 977, 1412 |
| Msp20I | TGGCCA | 2 cut(s) | 1446, 1566 |
| MspA1I | CMGCKG | 1 cut(s) | 1580 |
| MspI | CCGG | 2 cut(s) | 36, 137 |
| MspR9I | CCNGG | 3 cut(s) | 1443, 1833, 1929 |
| Mva1269I | GAATGC | 1 cut(s) | 2223 |
| MvaI | CCWGG | 3 cut(s) | 1443, 1833, 1929 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 41, 872 |
| NcoI | CCATGG | 1 cut(s) | 304 |
| NdeI | CATATG | 1 cut(s) | 2230 |
| NlaIV | GGNNCC | 4 cut(s) | 855, 876, 1358, 1926 |
| NmuCI | GTSAC | 4 cut(s) | 581, 884, 1983, 2009 |
| NspI | RCATGY | 1 cut(s) | 2089 |
| OliI | CACNNNNGTG | 1 cut(s) | 1412 |
| PagI | TCATGA | 2 cut(s) | 685, 1117 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 249 |
| PctI | GAATGC | 1 cut(s) | 2223 |
| PdmI | GAANNNNTTC | 3 cut(s) | 681, 852, 1814 |
| PfeI | GAWTC | 8 cut(s) | 86, 249, 398, 689, 734, 1114, 1259, 2122 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1247 |
| PkrI | GCNGC | 2 cut(s) | 1153, 2212 |
| Ple19I | CGATCG | 1 cut(s) | 131 |
| PleI | GAGTC | 2 cut(s) | 1560, 2075 |
| PpsI | GAGTC | 2 cut(s) | 1560, 2075 |
| PsiI | TTATAA | 2 cut(s) | 942, 1938 |
| Psp6I | CCWGG | 3 cut(s) | 1441, 1831, 1927 |
| PspFI | CCCAGC | 1 cut(s) | 1709 |
| PspGI | CCWGG | 3 cut(s) | 1441, 1831, 1927 |
| PspN4I | GGNNCC | 4 cut(s) | 855, 876, 1358, 1926 |
| PspPI | GGNCC | 4 cut(s) | 1716, 1741, 1849, 1906 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1791, 1955 |
| PsuI | RGATCY | 3 cut(s) | 571, 769, 2158 |
| PvuI | CGATCG | 1 cut(s) | 131 |
| PvuII | CAGCTG | 1 cut(s) | 1580 |
| RsaI | GTAC | 4 cut(s) | 302, 531, 1027, 1606 |
| RsaNI | GTAC | 4 cut(s) | 301, 530, 1026, 1605 |
| RseI | CAYNNNNRTG | 3 cut(s) | 515, 977, 1412 |
| SaqAI | TTAA | 7 cut(s) | 195, 792, 1422, 1503, 1695, 2004, 2043 |
| SatI | GCNGC | 2 cut(s) | 1152, 2211 |
| Sau96I | GGNCC | 4 cut(s) | 1716, 1741, 1849, 1906 |
| ScaI | AGTACT | 1 cut(s) | 1606 |
| SchI | GAGTC | 2 cut(s) | 1561, 2076 |
| ScrFI | CCNGG | 3 cut(s) | 1443, 1833, 1929 |
| SduI | GDGCHC | 3 cut(s) | 1255, 1489, 1785 |
| SfaNI | GCATC | 9 cut(s) | 123, 133, 283, 466, 496, 985, 997, 1142, 1582 |
| SfcI | CTRYAG | 1 cut(s) | 1137 |
| SinI | GGWCC | 3 cut(s) | 1716, 1849, 1906 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 515, 977, 1412 |
| SmlI | CTYRAG | 2 cut(s) | 861, 1547 |
| SmoI | CTYRAG | 2 cut(s) | 861, 1547 |
| Sse9I | AATT | 9 cut(s) | 81, 312, 387, 549, 565, 755, 825, 1085, 1813 |
| SsiI | CCGC | 1 cut(s) | 20 |
| SspMI | CTAG | 7 cut(s) | 32, 999, 1185, 1532, 1667, 1980, 2277 |
| StyD4I | CCNGG | 3 cut(s) | 1441, 1831, 1927 |
| StyI | CCWWGG | 2 cut(s) | 304, 1896 |
| TaaI | ACNGT | 5 cut(s) | 15, 223, 241, 1414, 1999 |
| TaqI | TCGA | 5 cut(s) | 127, 131, 265, 720, 2253 |
| TasI | AATT | 9 cut(s) | 81, 312, 387, 549, 565, 755, 825, 1085, 1813 |
| TatI | WGTACW | 1 cut(s) | 1604 |
| TfiI | GAWTC | 8 cut(s) | 86, 249, 398, 689, 734, 1114, 1259, 2122 |
| Tru1I | TTAA | 7 cut(s) | 195, 792, 1422, 1503, 1695, 2004, 2043 |
| Tru9I | TTAA | 7 cut(s) | 195, 792, 1422, 1503, 1695, 2004, 2043 |
| TscAI | CASTG | 6 cut(s) | 885, 991, 1494, 1979, 2004, 2038 |
| TseFI | GTSAC | 4 cut(s) | 581, 884, 1983, 2009 |
| TseI | GCWGC | 2 cut(s) | 1151, 2210 |
| Tsp45I | GTSAC | 4 cut(s) | 581, 884, 1983, 2009 |
| TspGWI | ACGGA | 2 cut(s) | 219, 1043 |
| TspRI | CASTG | 6 cut(s) | 885, 991, 1494, 1979, 2004, 2038 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1247 |
| VneI | GTGCAC | 1 cut(s) | 1485 |
| VpaK11BI | GGWCC | 3 cut(s) | 1716, 1849, 1906 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 389 |
| XapI | RAATTY | 3 cut(s) | 755, 1085, 1813 |
| XbaI | TCTAGA | 1 cut(s) | 1666 |
| XceI | RCATGY | 1 cut(s) | 2089 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1971 |
| XmiI | GTMKAC | 2 cut(s) | 417, 969 |
| XmnI | GAANNNNTTC | 3 cut(s) | 681, 852, 1814 |
| XspI | CTAG | 7 cut(s) | 32, 999, 1185, 1532, 1667, 1980, 2277 |
| ZrmI | AGTACT | 1 cut(s) | 1606 |