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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1146 |
| AarI | CACCTGC | 1 cut(s) | 479 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1547 |
| Acc36I | ACCTGC | 2 cut(s) | 479, 967 |
| AccB1I | GGYRCC | 1 cut(s) | 1487 |
| AccI | GTMKAC | 1 cut(s) | 228 |
| AciI | CCGC | 3 cut(s) | 388, 1424, 1427 |
| AclWI | GGATC | 4 cut(s) | 426, 602, 900, 1818 |
| AcoI | YGGCCR | 2 cut(s) | 772, 1846 |
| AcsI | RAATTY | 2 cut(s) | 107, 454 |
| AcuI | CTGAAG | 2 cut(s) | 625, 1340 |
| AfaI | GTAC | 5 cut(s) | 171, 341, 680, 1640, 1798 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 121, 1392, 1537, 1895 |
| AflII | CTTAAG | 2 cut(s) | 1513, 1829 |
| AflIII | ACRYGT | 2 cut(s) | 761, 1686 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1690 |
| AjnI | CCWGG | 3 cut(s) | 610, 1039, 1741 |
| AluBI | AGCT | 6 cut(s) | 527, 749, 844, 900, 1466, 1936 |
| AluI | AGCT | 6 cut(s) | 527, 749, 844, 900, 1466, 1936 |
| Alw21I | GWGCWC | 1 cut(s) | 751 |
| Alw26I | GTCTC | 1 cut(s) | 842 |
| AlwI | GGATC | 4 cut(s) | 426, 602, 900, 1818 |
| Ama87I | CYCGRG | 1 cut(s) | 1168 |
| AoxI | GGCC | 4 cut(s) | 772, 1174, 1748, 1846 |
| ApeKI | GCWGC | 3 cut(s) | 310, 527, 1738 |
| ApoI | RAATTY | 2 cut(s) | 107, 454 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1175, 1207 |
| AseI | ATTAAT | 1 cut(s) | 1581 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 707 |
| AspS9I | GGNCC | 3 cut(s) | 1175, 1692, 1706 |
| AsuHPI | GGTGA | 5 cut(s) | 465, 1018, 1429, 1649, 1712 |
| AvaI | CYCGRG | 1 cut(s) | 1168 |
| AvaII | GGWCC | 2 cut(s) | 1692, 1706 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1630, 1663 |
| BalI | TGGCCA | 2 cut(s) | 774, 1848 |
| BanI | GGYRCC | 1 cut(s) | 1487 |
| BanII | GRGCYC | 1 cut(s) | 751 |
| BbsI | GAAGAC | 5 cut(s) | 764, 1130, 1640, 1760, 1910 |
| Bbv12I | GWGCWC | 1 cut(s) | 751 |
| BbvI | GCAGC | 3 cut(s) | 322, 514, 1750 |
| BccI | CCATC | 5 cut(s) | 322, 737, 988, 1530, 1697 |
| BciT130I | CCWGG | 3 cut(s) | 612, 1041, 1743 |
| BciVI | GTATCC | 1 cut(s) | 1724 |
| BclI | TGATCA | 1 cut(s) | 1266 |
| BcoDI | GTCTC | 1 cut(s) | 842 |
| BfmI | CTRYAG | 2 cut(s) | 361, 1651 |
| BfrI | CTTAAG | 2 cut(s) | 1513, 1829 |
| BfuAI | ACCTGC | 2 cut(s) | 479, 967 |
| BfuI | GTATCC | 1 cut(s) | 1724 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1747 |
| BisI | GCNGC | 5 cut(s) | 311, 389, 528, 1425, 1739 |
| BlsI | GCNGC | 5 cut(s) | 312, 390, 529, 1426, 1740 |
| Bme1390I | CCNGG | 3 cut(s) | 612, 1041, 1743 |
| Bme18I | GGWCC | 2 cut(s) | 1692, 1706 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1690 |
| BmeT110I | CYCGRG | 1 cut(s) | 1168 |
| BmgT120I | GGNCC | 3 cut(s) | 1175, 1692, 1706 |
| BmiI | GGNNCC | 4 cut(s) | 616, 978, 1177, 1489 |
| BmrFI | CCNGG | 3 cut(s) | 612, 1041, 1743 |
| BmsI | GCATC | 7 cut(s) | 48, 144, 175, 297, 561, 1129, 1446 |
| BpiI | GAAGAC | 5 cut(s) | 764, 1130, 1640, 1760, 1910 |
| BpmI | CTGGAG | 1 cut(s) | 866 |
| BpuEI | CTTGAG | 1 cut(s) | 1613 |
| BsaJI | CCNNGG | 3 cut(s) | 208, 1369, 1695 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 121, 1392, 1537, 1895 |
| Bse118I | RCCGGY | 1 cut(s) | 1916 |
| Bse1I | ACTGG | 3 cut(s) | 1154, 1670, 1804 |
| Bse3DI | GCAATG | 2 cut(s) | 840, 1611 |
| BseBI | CCWGG | 3 cut(s) | 612, 1041, 1743 |
| BseDI | CCNNGG | 3 cut(s) | 208, 1369, 1695 |
| BseGI | GGATG | 7 cut(s) | 13, 63, 190, 748, 1437, 1551, 1777 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 121, 1392, 1537, 1895 |
| BseMI | GCAATG | 2 cut(s) | 840, 1611 |
| BseMII | CTCAG | 2 cut(s) | 887, 1458 |
| BseNI | ACTGG | 3 cut(s) | 1154, 1670, 1804 |
| BseRI | GAGGAG | 2 cut(s) | 98, 1345 |
| BseXI | GCAGC | 3 cut(s) | 322, 514, 1750 |
| BsgI | GTGCAG | 1 cut(s) | 969 |
| BshFI | GGCC | 4 cut(s) | 774, 1176, 1750, 1848 |
| BshNI | GGYRCC | 1 cut(s) | 1487 |
| BsiHKAI | GWGCWC | 1 cut(s) | 751 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1168 |
| BsiSI | CCGG | 1 cut(s) | 1917 |
| BslFI | GGGAC | 2 cut(s) | 1151, 1553 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 121, 1392, 1537, 1895 |
| BsmAI | GTCTC | 1 cut(s) | 842 |
| BsmFI | GGGAC | 2 cut(s) | 1151, 1553 |
| BsnI | GGCC | 4 cut(s) | 774, 1176, 1750, 1848 |
| BsoBI | CYCGRG | 1 cut(s) | 1168 |
| Bsp1286I | GDGCHC | 1 cut(s) | 751 |
| Bsp1407I | TGTACA | 2 cut(s) | 169, 678 |
| Bsp143I | GATC | 8 cut(s) | 418, 607, 725, 892, 990, 1057, 1266, 1823 |
| Bsp19I | CCATGG | 1 cut(s) | 1369 |
| BspACI | CCGC | 3 cut(s) | 388, 1424, 1427 |
| BspANI | GGCC | 4 cut(s) | 774, 1176, 1750, 1848 |
| BspCNI | CTCAG | 2 cut(s) | 888, 1459 |
| BspLI | GGNNCC | 4 cut(s) | 616, 978, 1177, 1489 |
| BspMI | ACCTGC | 2 cut(s) | 479, 967 |
| BspPI | GGATC | 4 cut(s) | 426, 602, 900, 1818 |
| BspT107I | GGYRCC | 1 cut(s) | 1487 |
| BspTI | CTTAAG | 2 cut(s) | 1513, 1829 |
| BsrDI | GCAATG | 2 cut(s) | 840, 1611 |
| BsrFI | RCCGGY | 1 cut(s) | 1916 |
| BsrGI | TGTACA | 2 cut(s) | 169, 678 |
| BsrI | ACTGG | 3 cut(s) | 1154, 1670, 1804 |
| BssAI | RCCGGY | 1 cut(s) | 1916 |
| BssECI | CCNNGG | 3 cut(s) | 208, 1369, 1695 |
| BssMI | GATC | 8 cut(s) | 418, 607, 725, 892, 990, 1057, 1266, 1823 |
| BssT1I | CCWWGG | 3 cut(s) | 208, 1369, 1695 |
| Bst2UI | CCWGG | 3 cut(s) | 612, 1041, 1743 |
| Bst4CI | ACNGT | 5 cut(s) | 169, 879, 1549, 1655, 1844 |
| Bst6I | CTCTTC | 2 cut(s) | 1302, 1922 |
| BstAFI | CTTAAG | 2 cut(s) | 1513, 1829 |
| BstAUI | TGTACA | 2 cut(s) | 169, 678 |
| BstC8I | GCNNGC | 2 cut(s) | 576, 1286 |
| BstDEI | CTNAG | 3 cut(s) | 462, 896, 1467 |
| BstDSI | CCRYGG | 1 cut(s) | 1369 |
| BstF5I | GGATG | 7 cut(s) | 13, 63, 190, 748, 1437, 1551, 1777 |
| BstKTI | GATC | 8 cut(s) | 421, 610, 728, 895, 993, 1060, 1269, 1826 |
| BstMAI | GTCTC | 1 cut(s) | 842 |
| BstMBI | GATC | 8 cut(s) | 418, 607, 725, 892, 990, 1057, 1266, 1823 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 515, 524, 575, 1574, 1747, 1845 |
| BstNI | CCWGG | 3 cut(s) | 612, 1041, 1743 |
| BstNSI | RCATGY | 5 cut(s) | 68, 765, 1231, 1568, 1690 |
| BstSCI | CCNGG | 3 cut(s) | 610, 1039, 1741 |
| BstSFI | CTRYAG | 2 cut(s) | 361, 1651 |
| BstV1I | GCAGC | 3 cut(s) | 322, 514, 1750 |
| BstV2I | GAAGAC | 5 cut(s) | 764, 1130, 1640, 1760, 1910 |
| BstX2I | RGATCY | 2 cut(s) | 892, 1823 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 505, 1188 |
| BstYI | RGATCY | 2 cut(s) | 892, 1823 |
| BsuI | GTATCC | 1 cut(s) | 1724 |
| BsuRI | GGCC | 4 cut(s) | 774, 1176, 1750, 1848 |
| BtgI | CCRYGG | 1 cut(s) | 1369 |
| BtsCI | GGATG | 7 cut(s) | 13, 63, 190, 748, 1437, 1551, 1777 |
| BtsIMutI | CAGTG | 2 cut(s) | 735, 1941 |
| BveI | ACCTGC | 2 cut(s) | 479, 967 |
| Cac8I | GCNNGC | 2 cut(s) | 576, 1286 |
| Cfr10I | RCCGGY | 1 cut(s) | 1916 |
| Cfr13I | GGNCC | 3 cut(s) | 1175, 1692, 1706 |
| CseI | GACGC | 1 cut(s) | 1283 |
| Csp6I | GTAC | 5 cut(s) | 170, 340, 679, 1639, 1797 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 197, 232, 1438, 1473 |
| CviQI | GTAC | 5 cut(s) | 170, 340, 679, 1639, 1797 |
| DdeI | CTNAG | 3 cut(s) | 462, 896, 1467 |
| DpnI | GATC | 8 cut(s) | 420, 609, 727, 894, 992, 1059, 1268, 1825 |
| DpnII | GATC | 8 cut(s) | 418, 607, 725, 892, 990, 1057, 1266, 1823 |
| DraI | TTTAAA | 1 cut(s) | 150 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1547 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1690 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1547 |
| EaeI | YGGCCR | 2 cut(s) | 772, 1846 |
| Eam1104I | CTCTTC | 2 cut(s) | 1302, 1922 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1690 |
| EarI | CTCTTC | 2 cut(s) | 1302, 1922 |
| EciI | GGCGGA | 1 cut(s) | 1442 |
| Ecl136II | GAGCTC | 1 cut(s) | 749 |
| Eco130I | CCWWGG | 3 cut(s) | 208, 1369, 1695 |
| Eco24I | GRGCYC | 1 cut(s) | 751 |
| Eco47I | GGWCC | 2 cut(s) | 1692, 1706 |
| Eco53kI | GAGCTC | 1 cut(s) | 749 |
| Eco57I | CTGAAG | 2 cut(s) | 625, 1340 |
| Eco88I | CYCGRG | 1 cut(s) | 1168 |
| EcoICRI | GAGCTC | 1 cut(s) | 749 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1175 |
| EcoRI | GAATTC | 1 cut(s) | 107 |
| EcoRII | CCWGG | 3 cut(s) | 610, 1039, 1741 |
| EcoT14I | CCWWGG | 3 cut(s) | 208, 1369, 1695 |
| EcoT22I | ATGCAT | 3 cut(s) | 190, 354, 1264 |
| EcoT38I | GRGCYC | 1 cut(s) | 751 |
| ErhI | CCWWGG | 3 cut(s) | 208, 1369, 1695 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 493, 525 |
| FaqI | GGGAC | 2 cut(s) | 1151, 1553 |
| FbaI | TGATCA | 1 cut(s) | 1266 |
| FblI | GTMKAC | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 5 cut(s) | 311, 389, 528, 1425, 1739 |
| FokI | GGATG | 7 cut(s) | 20, 70, 197, 755, 1424, 1538, 1784 |
| FriOI | GRGCYC | 1 cut(s) | 751 |
| Fsp4HI | GCNGC | 5 cut(s) | 311, 389, 528, 1425, 1739 |
| GluI | GCNGC | 5 cut(s) | 311, 389, 528, 1425, 1739 |
| GsuI | CTGGAG | 1 cut(s) | 866 |
| HaeIII | GGCC | 4 cut(s) | 774, 1176, 1750, 1848 |
| HapII | CCGG | 1 cut(s) | 1917 |
| HgaI | GACGC | 1 cut(s) | 1283 |
| HinfI | GANTC | 5 cut(s) | 41, 74, 708, 857, 1336 |
| HpaII | CCGG | 1 cut(s) | 1917 |
| HphI | GGTGA | 5 cut(s) | 465, 1018, 1429, 1649, 1712 |
| Hpy166II | GTNNAC | 3 cut(s) | 229, 1017, 1504 |
| Hpy188I | TCNGA | 8 cut(s) | 46, 79, 652, 794, 897, 1062, 1104, 1780 |
| Hpy188III | TCNNGA | 3 cut(s) | 670, 1168, 1630 |
| Hpy8I | GTNNAC | 3 cut(s) | 229, 1017, 1504 |
| HpyAV | CCTTC | 6 cut(s) | 193, 539, 583, 1099, 1341, 1478 |
| HpyCH4III | ACNGT | 5 cut(s) | 169, 879, 1549, 1655, 1844 |
| HpyCH4IV | ACGT | 1 cut(s) | 1637 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 515, 524, 575, 1574, 1747, 1845 |
| HpyF3I | CTNAG | 3 cut(s) | 462, 896, 1467 |
| HpySE526I | ACGT | 1 cut(s) | 1637 |
| Ksp22I | TGATCA | 1 cut(s) | 1266 |
| Kzo9I | GATC | 8 cut(s) | 418, 607, 725, 892, 990, 1057, 1266, 1823 |
| LmnI | GCTCC | 4 cut(s) | 559, 746, 1281, 1621 |
| Lsp1109I | GCAGC | 3 cut(s) | 322, 514, 1750 |
| LweI | GCATC | 7 cut(s) | 48, 144, 175, 297, 561, 1129, 1446 |
| MaeII | ACGT | 1 cut(s) | 1637 |
| MaeIII | GTNAC | 5 cut(s) | 471, 635, 1223, 1294, 1655 |
| MalI | GATC | 8 cut(s) | 420, 609, 727, 894, 992, 1059, 1268, 1825 |
| MboI | GATC | 8 cut(s) | 418, 607, 725, 892, 990, 1057, 1266, 1823 |
| MfeI | CAATTG | 2 cut(s) | 69, 621 |
| MflI | RGATCY | 2 cut(s) | 892, 1823 |
| MhlI | GDGCHC | 1 cut(s) | 751 |
| MlsI | TGGCCA | 2 cut(s) | 774, 1848 |
| MluCI | AATT | 8 cut(s) | 69, 107, 139, 423, 454, 621, 1578, 1806 |
| MluNI | TGGCCA | 2 cut(s) | 774, 1848 |
| MlyI | GAGTC | 1 cut(s) | 851 |
| MmeI | TCCRAC | 3 cut(s) | 69, 772, 1284 |
| Mox20I | TGGCCA | 2 cut(s) | 774, 1848 |
| Mph1103I | ATGCAT | 3 cut(s) | 190, 354, 1264 |
| MroXI | GAANNNNTTC | 1 cut(s) | 707 |
| MscI | TGGCCA | 2 cut(s) | 774, 1848 |
| MslI | CAYNNNNRTG | 4 cut(s) | 125, 326, 1374, 1685 |
| Msp20I | TGGCCA | 2 cut(s) | 774, 1848 |
| MspCI | CTTAAG | 2 cut(s) | 1513, 1829 |
| MspI | CCGG | 1 cut(s) | 1917 |
| MspR9I | CCNGG | 3 cut(s) | 612, 1041, 1743 |
| MunI | CAATTG | 2 cut(s) | 69, 621 |
| MvaI | CCWGG | 3 cut(s) | 612, 1041, 1743 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 515, 524, 575, 1574, 1747, 1845 |
| NcoI | CCATGG | 1 cut(s) | 1369 |
| NdeII | GATC | 8 cut(s) | 418, 607, 725, 892, 990, 1057, 1266, 1823 |
| NlaIV | GGNNCC | 4 cut(s) | 616, 978, 1177, 1489 |
| NmuCI | GTSAC | 5 cut(s) | 471, 635, 1223, 1294, 1655 |
| NsiI | ATGCAT | 3 cut(s) | 190, 354, 1264 |
| NspI | RCATGY | 5 cut(s) | 68, 765, 1231, 1568, 1690 |
| PaqCI | CACCTGC | 1 cut(s) | 479 |
| PciI | ACATGT | 2 cut(s) | 761, 1686 |
| PdmI | GAANNNNTTC | 1 cut(s) | 707 |
| PfeI | GAWTC | 4 cut(s) | 41, 74, 708, 1336 |
| PflFI | GACNNNGTC | 1 cut(s) | 469 |
| PfoI | TCCNGGA | 2 cut(s) | 610, 1039 |
| PkrI | GCNGC | 5 cut(s) | 312, 390, 529, 1426, 1740 |
| PleI | GAGTC | 1 cut(s) | 851 |
| PpsI | GAGTC | 1 cut(s) | 851 |
| PscI | ACATGT | 2 cut(s) | 761, 1686 |
| PshBI | ATTAAT | 1 cut(s) | 1581 |
| PsiI | TTATAA | 1 cut(s) | 1146 |
| Psp124BI | GAGCTC | 1 cut(s) | 751 |
| Psp6I | CCWGG | 3 cut(s) | 610, 1039, 1741 |
| PspGI | CCWGG | 3 cut(s) | 610, 1039, 1741 |
| PspN4I | GGNNCC | 4 cut(s) | 616, 978, 1177, 1489 |
| PspPI | GGNCC | 3 cut(s) | 1175, 1692, 1706 |
| PsuI | RGATCY | 2 cut(s) | 892, 1823 |
| PsyI | GACNNNGTC | 1 cut(s) | 469 |
| RsaI | GTAC | 5 cut(s) | 171, 341, 680, 1640, 1798 |
| RsaNI | GTAC | 5 cut(s) | 170, 340, 679, 1639, 1797 |
| RseI | CAYNNNNRTG | 4 cut(s) | 125, 326, 1374, 1685 |
| SacI | GAGCTC | 1 cut(s) | 751 |
| SatI | GCNGC | 5 cut(s) | 311, 389, 528, 1425, 1739 |
| Sau3AI | GATC | 8 cut(s) | 418, 607, 725, 892, 990, 1057, 1266, 1823 |
| Sau96I | GGNCC | 3 cut(s) | 1175, 1692, 1706 |
| SchI | GAGTC | 1 cut(s) | 851 |
| ScrFI | CCNGG | 3 cut(s) | 612, 1041, 1743 |
| SduI | GDGCHC | 1 cut(s) | 751 |
| SfaNI | GCATC | 7 cut(s) | 48, 144, 175, 297, 561, 1129, 1446 |
| SfcI | CTRYAG | 2 cut(s) | 361, 1651 |
| SinI | GGWCC | 2 cut(s) | 1692, 1706 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 125, 326, 1374, 1685 |
| SmlI | CTYRAG | 3 cut(s) | 1513, 1628, 1829 |
| SmoI | CTYRAG | 3 cut(s) | 1513, 1628, 1829 |
| Sse9I | AATT | 8 cut(s) | 69, 107, 139, 423, 454, 621, 1578, 1806 |
| SsiI | CCGC | 3 cut(s) | 388, 1424, 1427 |
| SspI | AATATT | 1 cut(s) | 1480 |
| SstI | GAGCTC | 1 cut(s) | 751 |
| StyD4I | CCNGG | 3 cut(s) | 610, 1039, 1741 |
| StyI | CCWWGG | 3 cut(s) | 208, 1369, 1695 |
| TaaI | ACNGT | 5 cut(s) | 169, 879, 1549, 1655, 1844 |
| TaiI | ACGT | 1 cut(s) | 1640 |
| TaqI | TCGA | 1 cut(s) | 1345 |
| TasI | AATT | 8 cut(s) | 69, 107, 139, 423, 454, 621, 1578, 1806 |
| TatI | WGTACW | 2 cut(s) | 169, 678 |
| TauI | GCSGC | 2 cut(s) | 391, 1427 |
| TfiI | GAWTC | 4 cut(s) | 41, 74, 708, 1336 |
| TscAI | CASTG | 2 cut(s) | 735, 1948 |
| TseFI | GTSAC | 5 cut(s) | 471, 635, 1223, 1294, 1655 |
| TseI | GCWGC | 3 cut(s) | 310, 527, 1738 |
| Tsp45I | GTSAC | 5 cut(s) | 471, 635, 1223, 1294, 1655 |
| TspGWI | ACGGA | 1 cut(s) | 137 |
| TspRI | CASTG | 2 cut(s) | 735, 1948 |
| Tth111I | GACNNNGTC | 1 cut(s) | 469 |
| Vha464I | CTTAAG | 2 cut(s) | 1513, 1829 |
| VpaK11BI | GGWCC | 2 cut(s) | 1692, 1706 |
| VspI | ATTAAT | 1 cut(s) | 1581 |
| XapI | RAATTY | 2 cut(s) | 107, 454 |
| XceI | RCATGY | 5 cut(s) | 68, 765, 1231, 1568, 1690 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 625, 1037, 1498 |
| XmiI | GTMKAC | 1 cut(s) | 228 |
| XmnI | GAANNNNTTC | 1 cut(s) | 707 |
| Zsp2I | ATGCAT | 3 cut(s) | 190, 354, 1264 |