TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PB1-like | PF26130 | 66 - 147 | 7.2e-07 | PB1-like domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 439 |
| AccI | GTMKAC | 1 cut(s) | 501 |
| AccII | CGCG | 1 cut(s) | 39 |
| AciI | CCGC | 2 cut(s) | 37, 39 |
| AclWI | GGATC | 1 cut(s) | 93 |
| AcoI | YGGCCR | 1 cut(s) | 128 |
| AcsI | RAATTY | 2 cut(s) | 166, 518 |
| AfaI | GTAC | 3 cut(s) | 99, 242, 365 |
| AgsI | TTSAA | 2 cut(s) | 13, 302 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 289 |
| AluBI | AGCT | 1 cut(s) | 62 |
| AluI | AGCT | 1 cut(s) | 62 |
| AlwI | GGATC | 1 cut(s) | 93 |
| AoxI | GGCC | 1 cut(s) | 128 |
| ApoI | RAATTY | 2 cut(s) | 166, 518 |
| AseI | ATTAAT | 2 cut(s) | 258, 327 |
| AspS9I | GGNCC | 3 cut(s) | 316, 345, 487 |
| AsuHPI | GGTGA | 1 cut(s) | 260 |
| AsuNHI | GCTAGC | 1 cut(s) | 58 |
| AvaII | GGWCC | 3 cut(s) | 316, 345, 487 |
| AxyI | CCTNAGG | 1 cut(s) | 23 |
| BaeGI | GKGCMC | 1 cut(s) | 81 |
| BanI | GGYRCC | 1 cut(s) | 439 |
| BccI | CCATC | 2 cut(s) | 302, 377 |
| BceAI | ACGGC | 1 cut(s) | 143 |
| BfaI | CTAG | 3 cut(s) | 59, 63, 342 |
| BmcAI | AGTACT | 1 cut(s) | 242 |
| Bme18I | GGWCC | 3 cut(s) | 316, 345, 487 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 289 |
| BmgT120I | GGNCC | 3 cut(s) | 316, 345, 487 |
| BmiI | GGNNCC | 2 cut(s) | 441, 489 |
| BmsI | GCATC | 2 cut(s) | 45, 376 |
| BmtI | GCTAGC | 1 cut(s) | 62 |
| BsaAI | YACGTR | 1 cut(s) | 499 |
| BsaJI | CCNNGG | 3 cut(s) | 37, 81, 319 |
| Bse1I | ACTGG | 1 cut(s) | 459 |
| Bse21I | CCTNAGG | 1 cut(s) | 23 |
| Bse3DI | GCAATG | 1 cut(s) | 396 |
| BseDI | CCNNGG | 3 cut(s) | 37, 81, 319 |
| BseGI | GGATG | 1 cut(s) | 313 |
| BseMI | GCAATG | 1 cut(s) | 396 |
| BseMII | CTCAG | 1 cut(s) | 37 |
| BseNI | ACTGG | 1 cut(s) | 459 |
| BseSI | GKGCMC | 1 cut(s) | 81 |
| Bsh1236I | CGCG | 1 cut(s) | 39 |
| Bsh1285I | CGRYCG | 1 cut(s) | 53 |
| BshFI | GGCC | 1 cut(s) | 130 |
| BshNI | GGYRCC | 1 cut(s) | 439 |
| BsiEI | CGRYCG | 1 cut(s) | 53 |
| BsnI | GGCC | 1 cut(s) | 130 |
| Bsp1286I | GDGCHC | 1 cut(s) | 81 |
| Bsp143I | GATC | 2 cut(s) | 85, 526 |
| BspACI | CCGC | 2 cut(s) | 37, 39 |
| BspANI | GGCC | 1 cut(s) | 130 |
| BspCNI | CTCAG | 1 cut(s) | 36 |
| BspFNI | CGCG | 1 cut(s) | 39 |
| BspLI | GGNNCC | 2 cut(s) | 441, 489 |
| BspOI | GCTAGC | 1 cut(s) | 62 |
| BspPI | GGATC | 1 cut(s) | 93 |
| BspT107I | GGYRCC | 1 cut(s) | 439 |
| BsrDI | GCAATG | 1 cut(s) | 396 |
| BsrI | ACTGG | 1 cut(s) | 459 |
| BssECI | CCNNGG | 3 cut(s) | 37, 81, 319 |
| BssMI | GATC | 2 cut(s) | 85, 526 |
| BssT1I | CCWWGG | 1 cut(s) | 81 |
| Bst4CI | ACNGT | 3 cut(s) | 51, 202, 377 |
| Bst6I | CTCTTC | 2 cut(s) | 37, 152 |
| BstBAI | YACGTR | 1 cut(s) | 499 |
| BstC8I | GCNNGC | 2 cut(s) | 6, 60 |
| BstDEI | CTNAG | 4 cut(s) | 23, 113, 237, 505 |
| BstDSI | CCRYGG | 2 cut(s) | 37, 319 |
| BstF5I | GGATG | 1 cut(s) | 313 |
| BstFNI | CGCG | 1 cut(s) | 39 |
| BstKTI | GATC | 2 cut(s) | 88, 529 |
| BstMBI | GATC | 2 cut(s) | 85, 526 |
| BstMCI | CGRYCG | 1 cut(s) | 53 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 64 |
| BstSLI | GKGCMC | 1 cut(s) | 81 |
| BstSNI | TACGTA | 1 cut(s) | 499 |
| BstUI | CGCG | 1 cut(s) | 39 |
| Bsu36I | CCTNAGG | 1 cut(s) | 23 |
| BsuRI | GGCC | 1 cut(s) | 130 |
| BtgI | CCRYGG | 2 cut(s) | 37, 319 |
| BtsCI | GGATG | 1 cut(s) | 313 |
| BtsIMutI | CAGTG | 1 cut(s) | 382 |
| Cac8I | GCNNGC | 2 cut(s) | 6, 60 |
| Cfr13I | GGNCC | 3 cut(s) | 316, 345, 487 |
| Cfr42I | CCGCGG | 1 cut(s) | 40 |
| Csp6I | GTAC | 3 cut(s) | 98, 241, 364 |
| CviAII | CATG | 4 cut(s) | 209, 227, 436, 535 |
| CviJI | RGCY | 6 cut(s) | 21, 28, 62, 130, 216, 400 |
| CviKI_1 | RGCY | 6 cut(s) | 21, 28, 62, 130, 216, 400 |
| CviQI | GTAC | 3 cut(s) | 98, 241, 364 |
| DdeI | CTNAG | 4 cut(s) | 23, 113, 237, 505 |
| DpnI | GATC | 2 cut(s) | 87, 528 |
| DpnII | GATC | 2 cut(s) | 85, 526 |
| DriI | GACNNNNNGTC | 1 cut(s) | 289 |
| EaeI | YGGCCR | 1 cut(s) | 128 |
| Eam1104I | CTCTTC | 2 cut(s) | 37, 152 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 289 |
| EarI | CTCTTC | 2 cut(s) | 37, 152 |
| Eco105I | TACGTA | 1 cut(s) | 499 |
| Eco130I | CCWWGG | 1 cut(s) | 81 |
| Eco47I | GGWCC | 3 cut(s) | 316, 345, 487 |
| Eco81I | CCTNAGG | 1 cut(s) | 23 |
| EcoT14I | CCWWGG | 1 cut(s) | 81 |
| ErhI | CCWWGG | 1 cut(s) | 81 |
| FaeI | CATG | 4 cut(s) | 212, 230, 439, 538 |
| FatI | CATG | 4 cut(s) | 208, 226, 435, 534 |
| FblI | GTMKAC | 1 cut(s) | 501 |
| FokI | GGATG | 1 cut(s) | 320 |
| FspBI | CTAG | 3 cut(s) | 59, 63, 342 |
| HaeIII | GGCC | 1 cut(s) | 130 |
| Hin1II | CATG | 4 cut(s) | 212, 230, 439, 538 |
| HinfI | GANTC | 1 cut(s) | 233 |
| HphI | GGTGA | 1 cut(s) | 260 |
| Hpy166II | GTNNAC | 3 cut(s) | 100, 319, 502 |
| Hpy188I | TCNGA | 2 cut(s) | 94, 182 |
| Hpy188III | TCNNGA | 1 cut(s) | 470 |
| Hpy8I | GTNNAC | 3 cut(s) | 100, 319, 502 |
| HpyAV | CCTTC | 2 cut(s) | 128, 134 |
| HpyCH4III | ACNGT | 3 cut(s) | 51, 202, 377 |
| HpyCH4IV | ACGT | 2 cut(s) | 96, 498 |
| HpyCH4V | TGCA | 2 cut(s) | 389, 481 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 64 |
| HpyF3I | CTNAG | 4 cut(s) | 23, 113, 237, 505 |
| HpySE526I | ACGT | 2 cut(s) | 96, 498 |
| Hsp92II | CATG | 4 cut(s) | 212, 230, 439, 538 |
| KspI | CCGCGG | 1 cut(s) | 40 |
| Kzo9I | GATC | 2 cut(s) | 85, 526 |
| LpnPI | CCDG | 4 cut(s) | 10, 135, 144, 440 |
| LweI | GCATC | 2 cut(s) | 45, 376 |
| MaeI | CTAG | 3 cut(s) | 59, 63, 342 |
| MaeII | ACGT | 2 cut(s) | 96, 498 |
| MaeIII | GTNAC | 1 cut(s) | 68 |
| MalI | GATC | 2 cut(s) | 87, 528 |
| MboI | GATC | 2 cut(s) | 85, 526 |
| MboII | GAAGA | 3 cut(s) | 54, 166, 169 |
| MhlI | GDGCHC | 1 cut(s) | 81 |
| MluCI | AATT | 4 cut(s) | 166, 259, 459, 518 |
| MlyI | GAGTC | 1 cut(s) | 242 |
| MnlI | CCTC | 6 cut(s) | 32, 38, 155, 206, 453, 535 |
| MseI | TTAA | 2 cut(s) | 258, 327 |
| MspA1I | CMGCKG | 1 cut(s) | 39 |
| MvnI | CGCG | 1 cut(s) | 39 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 64 |
| NdeII | GATC | 2 cut(s) | 85, 526 |
| NheI | GCTAGC | 1 cut(s) | 58 |
| NlaIII | CATG | 4 cut(s) | 212, 230, 439, 538 |
| NlaIV | GGNNCC | 2 cut(s) | 441, 489 |
| PleI | GAGTC | 1 cut(s) | 241 |
| PpsI | GAGTC | 1 cut(s) | 241 |
| Ppu21I | YACGTR | 1 cut(s) | 499 |
| PshBI | ATTAAT | 2 cut(s) | 258, 327 |
| PspN4I | GGNNCC | 2 cut(s) | 441, 489 |
| PspPI | GGNCC | 3 cut(s) | 316, 345, 487 |
| RsaI | GTAC | 3 cut(s) | 99, 242, 365 |
| RsaNI | GTAC | 3 cut(s) | 98, 241, 364 |
| SacII | CCGCGG | 1 cut(s) | 40 |
| SaqAI | TTAA | 2 cut(s) | 258, 327 |
| Sau3AI | GATC | 2 cut(s) | 85, 526 |
| Sau96I | GGNCC | 3 cut(s) | 316, 345, 487 |
| ScaI | AGTACT | 1 cut(s) | 242 |
| SchI | GAGTC | 1 cut(s) | 242 |
| SduI | GDGCHC | 1 cut(s) | 81 |
| SetI | ASST | 3 cut(s) | 64, 99, 501 |
| SfaNI | GCATC | 2 cut(s) | 45, 376 |
| Sfr303I | CCGCGG | 1 cut(s) | 40 |
| SgrBI | CCGCGG | 1 cut(s) | 40 |
| SinI | GGWCC | 3 cut(s) | 316, 345, 487 |
| SnaBI | TACGTA | 1 cut(s) | 499 |
| Sse9I | AATT | 4 cut(s) | 166, 259, 459, 518 |
| SsiI | CCGC | 2 cut(s) | 37, 39 |
| SspMI | CTAG | 3 cut(s) | 59, 63, 342 |
| StyI | CCWWGG | 1 cut(s) | 81 |
| TaaI | ACNGT | 3 cut(s) | 51, 202, 377 |
| TaiI | ACGT | 2 cut(s) | 99, 501 |
| TaqI | TCGA | 2 cut(s) | 53, 372 |
| TasI | AATT | 4 cut(s) | 166, 259, 459, 518 |
| TatI | WGTACW | 1 cut(s) | 240 |
| Tru1I | TTAA | 2 cut(s) | 258, 327 |
| Tru9I | TTAA | 2 cut(s) | 258, 327 |
| TscAI | CASTG | 1 cut(s) | 382 |
| TspDTI | ATGAA | 2 cut(s) | 523, 531 |
| TspGWI | ACGGA | 1 cut(s) | 500 |
| TspRI | CASTG | 1 cut(s) | 382 |
| VpaK11BI | GGWCC | 3 cut(s) | 316, 345, 487 |
| VspI | ATTAAT | 2 cut(s) | 258, 327 |
| XapI | RAATTY | 2 cut(s) | 166, 518 |
| XmiI | GTMKAC | 1 cut(s) | 501 |
| XspI | CTAG | 3 cut(s) | 59, 63, 342 |
| ZrmI | AGTACT | 1 cut(s) | 242 |