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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1052 |
| Acc36I | ACCTGC | 2 cut(s) | 1052, 1996 |
| AccB1I | GGYRCC | 2 cut(s) | 1231, 1592 |
| AccBSI | CCGCTC | 1 cut(s) | 2127 |
| AccI | GTMKAC | 1 cut(s) | 75 |
| AciI | CCGC | 2 cut(s) | 1532, 2125 |
| AclI | AACGTT | 1 cut(s) | 54 |
| AclWI | GGATC | 4 cut(s) | 279, 761, 1175, 1273 |
| AcsI | RAATTY | 1 cut(s) | 1027 |
| AcuI | CTGAAG | 2 cut(s) | 1198, 1445 |
| AcyI | GRCGYC | 1 cut(s) | 2093 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 249, 596, 1497, 1642, 1923, 1994, 2089 |
| AflII | CTTAAG | 1 cut(s) | 2084 |
| AflIII | ACRYGT | 2 cut(s) | 1791, 2196 |
| AgsI | TTSAA | 9 cut(s) | 701, 1172, 1243, 1273, 1285, 1363, 1555, 1589, 1703 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1795 |
| AhlI | ACTAGT | 2 cut(s) | 887, 896 |
| AjnI | CCWGG | 3 cut(s) | 243, 589, 1183 |
| AluBI | AGCT | 8 cut(s) | 124, 373, 418, 425, 1100, 1571, 2023, 2028 |
| AluI | AGCT | 8 cut(s) | 124, 373, 418, 425, 1100, 1571, 2023, 2028 |
| AlwI | GGATC | 4 cut(s) | 279, 761, 1175, 1273 |
| AoxI | GGCC | 2 cut(s) | 2000, 2169 |
| ApeKI | GCWGC | 6 cut(s) | 21, 121, 373, 418, 1100, 1857 |
| ApoI | RAATTY | 1 cut(s) | 1027 |
| AseI | ATTAAT | 1 cut(s) | 1686 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1280 |
| AspA2I | CCTAGG | 1 cut(s) | 386 |
| AspS9I | GGNCC | 4 cut(s) | 1797, 1811, 1825, 2080 |
| AsuHPI | GGTGA | 9 cut(s) | 185, 224, 373, 466, 770, 1534, 1754, 1817, 1831 |
| AsuII | TTCGAA | 1 cut(s) | 2162 |
| AsuNHI | GCTAGC | 1 cut(s) | 644 |
| AvaII | GGWCC | 4 cut(s) | 1797, 1811, 1825, 2080 |
| AvrII | CCTAGG | 1 cut(s) | 386 |
| BaeGI | GKGCMC | 1 cut(s) | 243 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1735, 1768 |
| BanI | GGYRCC | 2 cut(s) | 1231, 1592 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 490, 522, 868, 900 |
| BauI | CACGAG | 1 cut(s) | 545 |
| BbsI | GAAGAC | 3 cut(s) | 336, 1745, 2133 |
| BbvI | GCAGC | 6 cut(s) | 8, 133, 360, 405, 1087, 1869 |
| BccI | CCATC | 7 cut(s) | 731, 749, 998, 1635, 1802, 1816, 1942 |
| BceAI | ACGGC | 1 cut(s) | 2089 |
| BciT130I | CCWGG | 3 cut(s) | 245, 591, 1185 |
| BciVI | GTATCC | 2 cut(s) | 597, 1843 |
| BclI | TGATCA | 1 cut(s) | 142 |
| BcuI | ACTAGT | 2 cut(s) | 887, 896 |
| BfaI | CTAG | 6 cut(s) | 387, 432, 645, 888, 897, 2013 |
| BfmI | CTRYAG | 1 cut(s) | 1756 |
| BfrI | CTTAAG | 1 cut(s) | 2084 |
| BfuAI | ACCTGC | 2 cut(s) | 1052, 1996 |
| BfuI | GTATCC | 2 cut(s) | 597, 1843 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2052 |
| BglII | AGATCT | 1 cut(s) | 2109 |
| BisI | GCNGC | 6 cut(s) | 22, 122, 374, 419, 1101, 1858 |
| BlnI | CCTAGG | 1 cut(s) | 386 |
| BlpI | GCTNAGC | 2 cut(s) | 426, 2024 |
| BlsI | GCNGC | 6 cut(s) | 23, 123, 375, 420, 1102, 1859 |
| Bme1390I | CCNGG | 3 cut(s) | 245, 591, 1185 |
| Bme18I | GGWCC | 4 cut(s) | 1797, 1811, 1825, 2080 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1795 |
| BmgT120I | GGNCC | 4 cut(s) | 1797, 1811, 1825, 2080 |
| BmiI | GGNNCC | 3 cut(s) | 1189, 1233, 1594 |
| BmrFI | CCNGG | 3 cut(s) | 245, 591, 1185 |
| BmrI | ACTGGG | 1 cut(s) | 829 |
| BmsI | GCATC | 6 cut(s) | 508, 972, 1134, 1551, 1966, 2025 |
| BmtI | GCTAGC | 1 cut(s) | 648 |
| BmuI | ACTGGG | 1 cut(s) | 829 |
| BpiI | GAAGAC | 3 cut(s) | 336, 1745, 2133 |
| BpmI | CTGGAG | 1 cut(s) | 531 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 426, 2024 |
| Bpu14I | TTCGAA | 1 cut(s) | 2162 |
| BpuEI | CTTGAG | 4 cut(s) | 477, 1639, 1718, 1978 |
| BsaBI | GATNNNNATC | 1 cut(s) | 765 |
| BsaHI | GRCGYC | 1 cut(s) | 2093 |
| BsaJI | CCNNGG | 6 cut(s) | 243, 386, 1474, 1800, 1814, 1917 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 39, 69, 806, 836, 935, 965, 1429, 1459 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 249, 596, 1497, 1642, 1923, 1994, 2089 |
| Bse118I | RCCGGY | 1 cut(s) | 1652 |
| Bse1I | ACTGG | 6 cut(s) | 164, 514, 631, 824, 835, 1775 |
| Bse3DI | GCAATG | 2 cut(s) | 572, 1716 |
| Bse8I | GATNNNNATC | 1 cut(s) | 765 |
| BseBI | CCWGG | 3 cut(s) | 245, 591, 1185 |
| BseDI | CCNNGG | 6 cut(s) | 243, 386, 1474, 1800, 1814, 1917 |
| BseGI | GGATG | 7 cut(s) | 93, 556, 742, 937, 987, 1542, 2016 |
| BseJI | GATNNNNATC | 1 cut(s) | 765 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 249, 596, 1497, 1642, 1923, 1994, 2089 |
| BseMI | GCAATG | 2 cut(s) | 572, 1716 |
| BseMII | CTCAG | 4 cut(s) | 417, 1563, 1920, 2015 |
| BseNI | ACTGG | 6 cut(s) | 164, 514, 631, 824, 835, 1775 |
| BseRI | GAGGAG | 5 cut(s) | 383, 528, 827, 956, 1450 |
| BseSI | GKGCMC | 1 cut(s) | 243 |
| BseXI | GCAGC | 6 cut(s) | 8, 133, 360, 405, 1087, 1869 |
| BsgI | GTGCAG | 2 cut(s) | 683, 900 |
| BshFI | GGCC | 2 cut(s) | 2002, 2171 |
| BshNI | GGYRCC | 2 cut(s) | 1231, 1592 |
| BsiSI | CCGG | 2 cut(s) | 719, 1653 |
| BslFI | GGGAC | 2 cut(s) | 1469, 1658 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 249, 596, 1497, 1642, 1923, 1994, 2089 |
| BsmFI | GGGAC | 2 cut(s) | 1469, 1658 |
| BsnI | GGCC | 2 cut(s) | 2002, 2171 |
| Bsp119I | TTCGAA | 1 cut(s) | 2162 |
| Bsp1286I | GDGCHC | 1 cut(s) | 243 |
| Bsp1407I | TGTACA | 1 cut(s) | 1251 |
| Bsp143I | GATC | 8 cut(s) | 142, 271, 766, 1180, 1265, 1298, 1371, 2109 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 426, 2024 |
| Bsp19I | CCATGG | 1 cut(s) | 1474 |
| BspACI | CCGC | 2 cut(s) | 1532, 2125 |
| BspANI | GGCC | 2 cut(s) | 2002, 2171 |
| BspCNI | CTCAG | 4 cut(s) | 418, 1564, 1921, 2016 |
| BspLI | GGNNCC | 3 cut(s) | 1189, 1233, 1594 |
| BspMI | ACCTGC | 2 cut(s) | 1052, 1996 |
| BspOI | GCTAGC | 1 cut(s) | 648 |
| BspPI | GGATC | 4 cut(s) | 279, 761, 1175, 1273 |
| BspT104I | TTCGAA | 1 cut(s) | 2162 |
| BspT107I | GGYRCC | 2 cut(s) | 1231, 1592 |
| BspTI | CTTAAG | 1 cut(s) | 2084 |
| BsrBI | CCGCTC | 1 cut(s) | 2127 |
| BsrDI | GCAATG | 2 cut(s) | 572, 1716 |
| BsrFI | RCCGGY | 1 cut(s) | 1652 |
| BsrGI | TGTACA | 1 cut(s) | 1251 |
| BsrI | ACTGG | 6 cut(s) | 164, 514, 631, 824, 835, 1775 |
| BssAI | RCCGGY | 1 cut(s) | 1652 |
| BssECI | CCNNGG | 6 cut(s) | 243, 386, 1474, 1800, 1814, 1917 |
| BssMI | GATC | 8 cut(s) | 142, 271, 766, 1180, 1265, 1298, 1371, 2109 |
| BssNI | GRCGYC | 1 cut(s) | 2093 |
| BssSI | CACGAG | 1 cut(s) | 545 |
| BssT1I | CCWWGG | 5 cut(s) | 386, 1474, 1800, 1814, 1917 |
| Bst2BI | CACGAG | 1 cut(s) | 545 |
| Bst2UI | CCWGG | 3 cut(s) | 245, 591, 1185 |
| Bst4CI | ACNGT | 4 cut(s) | 212, 264, 606, 1760 |
| Bst6I | CTCTTC | 3 cut(s) | 717, 780, 1407 |
| BstACI | GRCGYC | 1 cut(s) | 2093 |
| BstAFI | CTTAAG | 1 cut(s) | 2084 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1662, 2043 |
| BstAUI | TGTACA | 1 cut(s) | 1251 |
| BstBI | TTCGAA | 1 cut(s) | 2162 |
| BstC8I | GCNNGC | 6 cut(s) | 423, 646, 1051, 1149, 1391, 2030 |
| BstDEI | CTNAG | 6 cut(s) | 94, 426, 1035, 1572, 1929, 2024 |
| BstDSI | CCRYGG | 1 cut(s) | 1474 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1992 |
| BstF5I | GGATG | 7 cut(s) | 93, 556, 742, 937, 987, 1542, 2016 |
| BstKTI | GATC | 8 cut(s) | 145, 274, 769, 1183, 1268, 1301, 1374, 2112 |
| BstMBI | GATC | 8 cut(s) | 142, 271, 766, 1180, 1265, 1298, 1371, 2109 |
| BstNI | CCWGG | 3 cut(s) | 245, 591, 1185 |
| BstNSI | RCATGY | 5 cut(s) | 992, 1336, 1673, 1795, 2200 |
| BstSCI | CCNGG | 3 cut(s) | 243, 589, 1183 |
| BstSFI | CTRYAG | 1 cut(s) | 1756 |
| BstSLI | GKGCMC | 1 cut(s) | 243 |
| BstV1I | GCAGC | 6 cut(s) | 8, 133, 360, 405, 1087, 1869 |
| BstV2I | GAAGAC | 3 cut(s) | 336, 1745, 2133 |
| BstX2I | RGATCY | 2 cut(s) | 1265, 2109 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1078 |
| BstYI | RGATCY | 2 cut(s) | 1265, 2109 |
| BsuI | GTATCC | 2 cut(s) | 597, 1843 |
| BsuRI | GGCC | 2 cut(s) | 2002, 2171 |
| BtgI | CCRYGG | 1 cut(s) | 1474 |
| BtsCI | GGATG | 7 cut(s) | 93, 556, 742, 937, 987, 1542, 2016 |
| BtsI | GCAGTG | 1 cut(s) | 637 |
| BtsIMutI | CAGTG | 2 cut(s) | 260, 637 |
| BveI | ACCTGC | 2 cut(s) | 1052, 1996 |
| Cac8I | GCNNGC | 6 cut(s) | 423, 646, 1051, 1149, 1391, 2030 |
| Cfr10I | RCCGGY | 1 cut(s) | 1652 |
| Cfr13I | GGNCC | 4 cut(s) | 1797, 1811, 1825, 2080 |
| CseI | GACGC | 2 cut(s) | 1388, 2082 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1543, 1578 |
| DdeI | CTNAG | 6 cut(s) | 94, 426, 1035, 1572, 1929, 2024 |
| DpnI | GATC | 8 cut(s) | 144, 273, 768, 1182, 1267, 1300, 1373, 2111 |
| DpnII | GATC | 8 cut(s) | 142, 271, 766, 1180, 1265, 1298, 1371, 2109 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1795 |
| Eam1104I | CTCTTC | 3 cut(s) | 717, 780, 1407 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1795 |
| EarI | CTCTTC | 3 cut(s) | 717, 780, 1407 |
| EciI | GGCGGA | 1 cut(s) | 1547 |
| Eco130I | CCWWGG | 5 cut(s) | 386, 1474, 1800, 1814, 1917 |
| Eco147I | AGGCCT | 1 cut(s) | 2002 |
| Eco32I | GATATC | 1 cut(s) | 316 |
| Eco47I | GGWCC | 4 cut(s) | 1797, 1811, 1825, 2080 |
| Eco57I | CTGAAG | 2 cut(s) | 1198, 1445 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1992 |
| EcoRII | CCWGG | 3 cut(s) | 243, 589, 1183 |
| EcoRV | GATATC | 1 cut(s) | 316 |
| EcoT14I | CCWWGG | 5 cut(s) | 386, 1474, 1800, 1814, 1917 |
| EcoT22I | ATGCAT | 1 cut(s) | 1369 |
| ErhI | CCWWGG | 5 cut(s) | 386, 1474, 1800, 1814, 1917 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1066, 1098 |
| FaqI | GGGAC | 2 cut(s) | 1469, 1658 |
| FbaI | TGATCA | 1 cut(s) | 142 |
| FblI | GTMKAC | 1 cut(s) | 75 |
| Fnu4HI | GCNGC | 6 cut(s) | 22, 122, 374, 419, 1101, 1858 |
| FokI | GGATG | 7 cut(s) | 100, 563, 749, 944, 994, 1529, 2003 |
| Fsp4HI | GCNGC | 6 cut(s) | 22, 122, 374, 419, 1101, 1858 |
| FspBI | CTAG | 6 cut(s) | 387, 432, 645, 888, 897, 2013 |
| GluI | GCNGC | 6 cut(s) | 22, 122, 374, 419, 1101, 1858 |
| GsuI | CTGGAG | 1 cut(s) | 531 |
| HaeIII | GGCC | 2 cut(s) | 2002, 2171 |
| HapII | CCGG | 2 cut(s) | 719, 1653 |
| HgaI | GACGC | 2 cut(s) | 1388, 2082 |
| Hin1I | GRCGYC | 1 cut(s) | 2093 |
| HincII | GTYRAC | 1 cut(s) | 58 |
| HindII | GTYRAC | 1 cut(s) | 58 |
| HinfI | GANTC | 4 cut(s) | 965, 998, 1281, 1441 |
| HpaII | CCGG | 2 cut(s) | 719, 1653 |
| HphI | GGTGA | 9 cut(s) | 185, 224, 373, 466, 770, 1534, 1754, 1817, 1831 |
| Hpy166II | GTNNAC | 7 cut(s) | 58, 76, 542, 602, 1378, 1609, 2080 |
| Hpy188I | TCNGA | 7 cut(s) | 142, 147, 208, 970, 1003, 1225, 2146 |
| Hpy188III | TCNNGA | 2 cut(s) | 1243, 1735 |
| Hpy8I | GTNNAC | 7 cut(s) | 58, 76, 542, 602, 1378, 1609, 2080 |
| Hpy99I | CGWCG | 5 cut(s) | 212, 2098, 2134, 2137, 2140 |
| HpyAV | CCTTC | 9 cut(s) | 847, 1112, 1156, 1222, 1446, 1583, 1992, 2161, 2169 |
| HpyCH4III | ACNGT | 4 cut(s) | 212, 264, 606, 1760 |
| HpyCH4IV | ACGT | 3 cut(s) | 54, 72, 1742 |
| HpyF3I | CTNAG | 6 cut(s) | 94, 426, 1035, 1572, 1929, 2024 |
| HpySE526I | ACGT | 3 cut(s) | 54, 72, 1742 |
| Hsp92I | GRCGYC | 1 cut(s) | 2093 |
| Ksp22I | TGATCA | 1 cut(s) | 142 |
| Kzo9I | GATC | 8 cut(s) | 142, 271, 766, 1180, 1265, 1298, 1371, 2109 |
| LmnI | GCTCC | 5 cut(s) | 370, 415, 1132, 1386, 1726 |
| Lsp1109I | GCAGC | 6 cut(s) | 8, 133, 360, 405, 1087, 1869 |
| LweI | GCATC | 6 cut(s) | 508, 972, 1134, 1551, 1966, 2025 |
| MaeI | CTAG | 6 cut(s) | 387, 432, 645, 888, 897, 2013 |
| MaeII | ACGT | 3 cut(s) | 54, 72, 1742 |
| MaeIII | GTNAC | 8 cut(s) | 220, 505, 622, 668, 1208, 1328, 1399, 1760 |
| MalI | GATC | 8 cut(s) | 144, 273, 768, 1182, 1267, 1300, 1373, 2111 |
| MbiI | CCGCTC | 1 cut(s) | 2127 |
| MboI | GATC | 8 cut(s) | 142, 271, 766, 1180, 1265, 1298, 1371, 2109 |
| MfeI | CAATTG | 2 cut(s) | 993, 1194 |
| MflI | RGATCY | 2 cut(s) | 1265, 2109 |
| MhlI | GDGCHC | 1 cut(s) | 243 |
| MmeI | TCCRAC | 4 cut(s) | 231, 561, 804, 1389 |
| Mph1103I | ATGCAT | 1 cut(s) | 1369 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1280 |
| MseI | TTAA | 9 cut(s) | 126, 285, 462, 564, 1649, 1686, 1779, 2060, 2085 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1479, 1547, 1790 |
| MspA1I | CMGCKG | 2 cut(s) | 425, 2023 |
| MspCI | CTTAAG | 1 cut(s) | 2084 |
| MspI | CCGG | 2 cut(s) | 719, 1653 |
| MspR9I | CCNGG | 3 cut(s) | 245, 591, 1185 |
| MunI | CAATTG | 2 cut(s) | 993, 1194 |
| MvaI | CCWGG | 3 cut(s) | 245, 591, 1185 |
| NcoI | CCATGG | 1 cut(s) | 1474 |
| NdeII | GATC | 8 cut(s) | 142, 271, 766, 1180, 1265, 1298, 1371, 2109 |
| NheI | GCTAGC | 1 cut(s) | 644 |
| NlaIV | GGNNCC | 3 cut(s) | 1189, 1233, 1594 |
| NmuCI | GTSAC | 6 cut(s) | 220, 668, 1208, 1328, 1399, 1760 |
| NsiI | ATGCAT | 1 cut(s) | 1369 |
| NspI | RCATGY | 5 cut(s) | 992, 1336, 1673, 1795, 2200 |
| NspV | TTCGAA | 1 cut(s) | 2162 |
| PaqCI | CACCTGC | 1 cut(s) | 1052 |
| PceI | AGGCCT | 1 cut(s) | 2002 |
| PciI | ACATGT | 2 cut(s) | 1791, 2196 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 789, 2135 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1280 |
| PfeI | GAWTC | 4 cut(s) | 965, 998, 1281, 1441 |
| PflFI | GACNNNGTC | 1 cut(s) | 1042 |
| PfoI | TCCNGGA | 2 cut(s) | 589, 1183 |
| PkrI | GCNGC | 6 cut(s) | 23, 123, 375, 420, 1102, 1859 |
| PscI | ACATGT | 2 cut(s) | 1791, 2196 |
| PshBI | ATTAAT | 1 cut(s) | 1686 |
| Psp1406I | AACGTT | 1 cut(s) | 54 |
| Psp6I | CCWGG | 3 cut(s) | 243, 589, 1183 |
| PspGI | CCWGG | 3 cut(s) | 243, 589, 1183 |
| PspN4I | GGNNCC | 3 cut(s) | 1189, 1233, 1594 |
| PspPI | GGNCC | 4 cut(s) | 1797, 1811, 1825, 2080 |
| PsuI | RGATCY | 2 cut(s) | 1265, 2109 |
| PsyI | GACNNNGTC | 1 cut(s) | 1042 |
| PvuII | CAGCTG | 2 cut(s) | 425, 2023 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1479, 1547, 1790 |
| SaqAI | TTAA | 9 cut(s) | 126, 285, 462, 564, 1649, 1686, 1779, 2060, 2085 |
| SatI | GCNGC | 6 cut(s) | 22, 122, 374, 419, 1101, 1858 |
| Sau3AI | GATC | 8 cut(s) | 142, 271, 766, 1180, 1265, 1298, 1371, 2109 |
| Sau96I | GGNCC | 4 cut(s) | 1797, 1811, 1825, 2080 |
| ScrFI | CCNGG | 3 cut(s) | 245, 591, 1185 |
| SduI | GDGCHC | 1 cut(s) | 243 |
| SfaNI | GCATC | 6 cut(s) | 508, 972, 1134, 1551, 1966, 2025 |
| SfcI | CTRYAG | 1 cut(s) | 1756 |
| SfuI | TTCGAA | 1 cut(s) | 2162 |
| SinI | GGWCC | 4 cut(s) | 1797, 1811, 1825, 2080 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1479, 1547, 1790 |
| SmlI | CTYRAG | 5 cut(s) | 492, 1618, 1733, 1957, 2084 |
| SmoI | CTYRAG | 5 cut(s) | 492, 1618, 1733, 1957, 2084 |
| SpeI | ACTAGT | 2 cut(s) | 887, 896 |
| SseBI | AGGCCT | 1 cut(s) | 2002 |
| SsiI | CCGC | 2 cut(s) | 1532, 2125 |
| SspI | AATATT | 1 cut(s) | 1585 |
| SspMI | CTAG | 6 cut(s) | 387, 432, 645, 888, 897, 2013 |
| StuI | AGGCCT | 1 cut(s) | 2002 |
| StyD4I | CCNGG | 3 cut(s) | 243, 589, 1183 |
| StyI | CCWWGG | 5 cut(s) | 386, 1474, 1800, 1814, 1917 |
| TaaI | ACNGT | 4 cut(s) | 212, 264, 606, 1760 |
| TaiI | ACGT | 3 cut(s) | 57, 75, 1745 |
| TaqI | TCGA | 2 cut(s) | 1450, 2162 |
| TatI | WGTACW | 3 cut(s) | 264, 749, 1251 |
| TfiI | GAWTC | 4 cut(s) | 965, 998, 1281, 1441 |
| Tru1I | TTAA | 9 cut(s) | 126, 285, 462, 564, 1649, 1686, 1779, 2060, 2085 |
| Tru9I | TTAA | 9 cut(s) | 126, 285, 462, 564, 1649, 1686, 1779, 2060, 2085 |
| TscAI | CASTG | 2 cut(s) | 267, 637 |
| TseFI | GTSAC | 6 cut(s) | 220, 668, 1208, 1328, 1399, 1760 |
| TseI | GCWGC | 6 cut(s) | 21, 121, 373, 418, 1100, 1857 |
| Tsp45I | GTSAC | 6 cut(s) | 220, 668, 1208, 1328, 1399, 1760 |
| TspDTI | ATGAA | 4 cut(s) | 17, 177, 567, 987 |
| TspRI | CASTG | 2 cut(s) | 267, 637 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1042 |
| Vha464I | CTTAAG | 1 cut(s) | 2084 |
| VpaK11BI | GGWCC | 4 cut(s) | 1797, 1811, 1825, 2080 |
| VspI | ATTAAT | 1 cut(s) | 1686 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1992 |
| XapI | RAATTY | 1 cut(s) | 1027 |
| XceI | RCATGY | 5 cut(s) | 992, 1336, 1673, 1795, 2200 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1603 |
| XmaJI | CCTAGG | 1 cut(s) | 386 |
| XmiI | GTMKAC | 1 cut(s) | 75 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1280 |
| XspI | CTAG | 6 cut(s) | 387, 432, 645, 888, 897, 2013 |
| Zsp2I | ATGCAT | 1 cut(s) | 1369 |