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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 8 |
| AccI | GTMKAC | 1 cut(s) | 180 |
| AciI | CCGC | 5 cut(s) | 6, 112, 366, 381, 404 |
| AclWI | GGATC | 3 cut(s) | 37, 251, 264 |
| AcoI | YGGCCR | 1 cut(s) | 139 |
| AcsI | RAATTY | 1 cut(s) | 437 |
| AcyI | GRCGYC | 1 cut(s) | 428 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 137, 346 |
| AgsI | TTSAA | 3 cut(s) | 317, 377, 494 |
| AjiI | CACGTC | 1 cut(s) | 361 |
| AjnI | CCWGG | 1 cut(s) | 447 |
| AluBI | AGCT | 1 cut(s) | 25 |
| AluI | AGCT | 1 cut(s) | 25 |
| AlwI | GGATC | 3 cut(s) | 37, 251, 264 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 219 |
| AoxI | GGCC | 2 cut(s) | 139, 458 |
| ApeKI | GCWGC | 2 cut(s) | 88, 213 |
| ApoI | RAATTY | 1 cut(s) | 437 |
| AspLEI | GCGC | 1 cut(s) | 193 |
| AsuHPI | GGTGA | 2 cut(s) | 97, 355 |
| AsuNHI | GCTAGC | 1 cut(s) | 295 |
| BamHI | GGATCC | 1 cut(s) | 256 |
| BbsI | GAAGAC | 1 cut(s) | 47 |
| BbvI | GCAGC | 2 cut(s) | 100, 225 |
| BccI | CCATC | 1 cut(s) | 142 |
| BceAI | ACGGC | 1 cut(s) | 158 |
| BciT130I | CCWGG | 1 cut(s) | 449 |
| BclI | TGATCA | 2 cut(s) | 102, 481 |
| BfaI | CTAG | 1 cut(s) | 296 |
| BfmI | CTRYAG | 1 cut(s) | 422 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 163 |
| BisI | GCNGC | 2 cut(s) | 89, 214 |
| BlsI | GCNGC | 2 cut(s) | 90, 215 |
| Bme1390I | CCNGG | 1 cut(s) | 449 |
| BmgBI | CACGTC | 1 cut(s) | 361 |
| BmiI | GGNNCC | 1 cut(s) | 258 |
| BmrFI | CCNGG | 1 cut(s) | 449 |
| BmrI | ACTGGG | 1 cut(s) | 300 |
| BmsI | GCATC | 1 cut(s) | 377 |
| BmtI | GCTAGC | 1 cut(s) | 299 |
| BmuI | ACTGGG | 1 cut(s) | 300 |
| BpiI | GAAGAC | 1 cut(s) | 47 |
| BsaHI | GRCGYC | 1 cut(s) | 428 |
| BsaWI | WCCGGW | 1 cut(s) | 196 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 137, 346 |
| Bse1I | ACTGG | 1 cut(s) | 295 |
| BseBI | CCWGG | 1 cut(s) | 449 |
| BseGI | GGATG | 2 cut(s) | 134, 254 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 137, 346 |
| BseNI | ACTGG | 1 cut(s) | 295 |
| BseXI | GCAGC | 2 cut(s) | 100, 225 |
| BshFI | GGCC | 2 cut(s) | 141, 460 |
| BsiSI | CCGG | 3 cut(s) | 138, 197, 431 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 137, 346 |
| BsnI | GGCC | 2 cut(s) | 141, 460 |
| Bsp143I | GATC | 4 cut(s) | 42, 102, 256, 481 |
| BspACI | CCGC | 5 cut(s) | 6, 112, 366, 381, 404 |
| BspANI | GGCC | 2 cut(s) | 141, 460 |
| BspLI | GGNNCC | 1 cut(s) | 258 |
| BspOI | GCTAGC | 1 cut(s) | 299 |
| BspPI | GGATC | 3 cut(s) | 37, 251, 264 |
| BsrBI | CCGCTC | 1 cut(s) | 8 |
| BsrI | ACTGG | 1 cut(s) | 295 |
| BssMI | GATC | 4 cut(s) | 42, 102, 256, 481 |
| BssNI | GRCGYC | 1 cut(s) | 428 |
| Bst2UI | CCWGG | 1 cut(s) | 449 |
| Bst4CI | ACNGT | 1 cut(s) | 50 |
| BstACI | GRCGYC | 1 cut(s) | 428 |
| BstC8I | GCNNGC | 3 cut(s) | 155, 297, 301 |
| BstDEI | CTNAG | 1 cut(s) | 62 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 344 |
| BstF5I | GGATG | 2 cut(s) | 134, 254 |
| BstHHI | GCGC | 1 cut(s) | 193 |
| BstKTI | GATC | 4 cut(s) | 45, 105, 259, 484 |
| BstMBI | GATC | 4 cut(s) | 42, 102, 256, 481 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 163, 410 |
| BstNI | CCWGG | 1 cut(s) | 449 |
| BstSCI | CCNGG | 1 cut(s) | 447 |
| BstSFI | CTRYAG | 1 cut(s) | 422 |
| BstV1I | GCAGC | 2 cut(s) | 100, 225 |
| BstV2I | GAAGAC | 1 cut(s) | 47 |
| BstX2I | RGATCY | 1 cut(s) | 256 |
| BstYI | RGATCY | 1 cut(s) | 256 |
| BsuRI | GGCC | 2 cut(s) | 141, 460 |
| BtrI | CACGTC | 1 cut(s) | 361 |
| BtsCI | GGATG | 2 cut(s) | 134, 254 |
| Cac8I | GCNNGC | 3 cut(s) | 155, 297, 301 |
| CaiI | CAGNNNCTG | 1 cut(s) | 219 |
| CfoI | GCGC | 1 cut(s) | 193 |
| CseI | GACGC | 1 cut(s) | 436 |
| CviAII | CATG | 3 cut(s) | 476, 521, 528 |
| CviJI | RGCY | 9 cut(s) | 25, 91, 141, 166, 173, 216, 295, 452, 460 |
| CviKI_1 | RGCY | 9 cut(s) | 25, 91, 141, 166, 173, 216, 295, 452, 460 |
| DdeI | CTNAG | 1 cut(s) | 62 |
| DpnI | GATC | 4 cut(s) | 44, 104, 258, 483 |
| DpnII | GATC | 4 cut(s) | 42, 102, 256, 481 |
| EaeI | YGGCCR | 1 cut(s) | 139 |
| EciI | GGCGGA | 1 cut(s) | 396 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 344 |
| EcoRII | CCWGG | 1 cut(s) | 447 |
| FaeI | CATG | 3 cut(s) | 479, 524, 531 |
| FaiI | YATR | 8 cut(s) | 254, 274, 390, 411, 477, 516, 522, 529 |
| FatI | CATG | 3 cut(s) | 475, 520, 527 |
| FauI | CCCGC | 1 cut(s) | 119 |
| FbaI | TGATCA | 2 cut(s) | 102, 481 |
| FblI | GTMKAC | 1 cut(s) | 180 |
| Fnu4HI | GCNGC | 2 cut(s) | 89, 214 |
| FokI | GGATG | 2 cut(s) | 121, 261 |
| Fsp4HI | GCNGC | 2 cut(s) | 89, 214 |
| FspBI | CTAG | 1 cut(s) | 296 |
| GlaI | GCGC | 1 cut(s) | 192 |
| GluI | GCNGC | 2 cut(s) | 89, 214 |
| HaeIII | GGCC | 2 cut(s) | 141, 460 |
| HapII | CCGG | 3 cut(s) | 138, 197, 431 |
| HgaI | GACGC | 1 cut(s) | 436 |
| HhaI | GCGC | 1 cut(s) | 193 |
| Hin1I | GRCGYC | 1 cut(s) | 428 |
| Hin1II | CATG | 3 cut(s) | 479, 524, 531 |
| Hin6I | GCGC | 1 cut(s) | 191 |
| HinP1I | GCGC | 1 cut(s) | 191 |
| HincII | GTYRAC | 1 cut(s) | 181 |
| HindII | GTYRAC | 1 cut(s) | 181 |
| HindIII | AAGCTT | 1 cut(s) | 23 |
| HinfI | GANTC | 1 cut(s) | 469 |
| HpaII | CCGG | 3 cut(s) | 138, 197, 431 |
| HphI | GGTGA | 2 cut(s) | 97, 355 |
| Hpy166II | GTNNAC | 1 cut(s) | 181 |
| Hpy188III | TCNNGA | 1 cut(s) | 100 |
| Hpy8I | GTNNAC | 1 cut(s) | 181 |
| Hpy99I | CGWCG | 3 cut(s) | 179, 182, 185 |
| HpyAV | CCTTC | 2 cut(s) | 158, 371 |
| HpyCH4III | ACNGT | 1 cut(s) | 50 |
| HpyCH4IV | ACGT | 1 cut(s) | 360 |
| HpyCH4V | TGCA | 2 cut(s) | 392, 413 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 163, 410 |
| HpyF3I | CTNAG | 1 cut(s) | 62 |
| HpySE526I | ACGT | 1 cut(s) | 360 |
| Hsp92I | GRCGYC | 1 cut(s) | 428 |
| Hsp92II | CATG | 3 cut(s) | 479, 524, 531 |
| HspAI | GCGC | 1 cut(s) | 191 |
| Ksp22I | TGATCA | 2 cut(s) | 102, 481 |
| Kzo9I | GATC | 4 cut(s) | 42, 102, 256, 481 |
| LmnI | GCTCC | 2 cut(s) | 13, 210 |
| LpnPI | CCDG | 9 cut(s) | 95, 151, 152, 210, 263, 276, 434, 444, 461 |
| Lsp1109I | GCAGC | 2 cut(s) | 100, 225 |
| LweI | GCATC | 1 cut(s) | 377 |
| MaeI | CTAG | 1 cut(s) | 296 |
| MaeII | ACGT | 1 cut(s) | 360 |
| MaeIII | GTNAC | 1 cut(s) | 361 |
| MalI | GATC | 4 cut(s) | 44, 104, 258, 483 |
| MbiI | CCGCTC | 1 cut(s) | 8 |
| MboI | GATC | 4 cut(s) | 42, 102, 256, 481 |
| MboII | GAAGA | 1 cut(s) | 47 |
| MfeI | CAATTG | 2 cut(s) | 372, 462 |
| MflI | RGATCY | 1 cut(s) | 256 |
| MluCI | AATT | 5 cut(s) | 14, 372, 437, 462, 502 |
| MnlI | CCTC | 8 cut(s) | 21, 89, 118, 156, 180, 227, 350, 377 |
| MspI | CCGG | 3 cut(s) | 138, 197, 431 |
| MspR9I | CCNGG | 1 cut(s) | 449 |
| MunI | CAATTG | 2 cut(s) | 372, 462 |
| MvaI | CCWGG | 1 cut(s) | 449 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 163, 410 |
| NdeII | GATC | 4 cut(s) | 42, 102, 256, 481 |
| NheI | GCTAGC | 1 cut(s) | 295 |
| NlaIII | CATG | 3 cut(s) | 479, 524, 531 |
| NlaIV | GGNNCC | 1 cut(s) | 258 |
| NmuCI | GTSAC | 1 cut(s) | 361 |
| PfeI | GAWTC | 1 cut(s) | 469 |
| PkrI | GCNGC | 2 cut(s) | 90, 215 |
| Psp6I | CCWGG | 1 cut(s) | 447 |
| PspGI | CCWGG | 1 cut(s) | 447 |
| PspN4I | GGNNCC | 1 cut(s) | 258 |
| PstNI | CAGNNNCTG | 1 cut(s) | 219 |
| PsuI | RGATCY | 1 cut(s) | 256 |
| SalI | GTCGAC | 1 cut(s) | 179 |
| SatI | GCNGC | 2 cut(s) | 89, 214 |
| Sau3AI | GATC | 4 cut(s) | 42, 102, 256, 481 |
| ScrFI | CCNGG | 1 cut(s) | 449 |
| SetI | ASST | 6 cut(s) | 27, 110, 282, 342, 351, 363 |
| SfaNI | GCATC | 1 cut(s) | 377 |
| SfcI | CTRYAG | 1 cut(s) | 422 |
| SgrDI | CGTCGACG | 1 cut(s) | 179 |
| Sse9I | AATT | 5 cut(s) | 14, 372, 437, 462, 502 |
| SsiI | CCGC | 5 cut(s) | 6, 112, 366, 381, 404 |
| SspI | AATATT | 1 cut(s) | 418 |
| SspMI | CTAG | 1 cut(s) | 296 |
| StyD4I | CCNGG | 1 cut(s) | 447 |
| TaaI | ACNGT | 1 cut(s) | 50 |
| TaiI | ACGT | 1 cut(s) | 363 |
| TaqI | TCGA | 1 cut(s) | 180 |
| TasI | AATT | 5 cut(s) | 14, 372, 437, 462, 502 |
| TfiI | GAWTC | 1 cut(s) | 469 |
| TseFI | GTSAC | 1 cut(s) | 361 |
| TseI | GCWGC | 2 cut(s) | 88, 213 |
| Tsp45I | GTSAC | 1 cut(s) | 361 |
| TspDTI | ATGAA | 1 cut(s) | 47 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 344 |
| XapI | RAATTY | 1 cut(s) | 437 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 250 |
| XmiI | GTMKAC | 1 cut(s) | 180 |
| XspI | CTAG | 1 cut(s) | 296 |