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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 34, 59 |
| AcoI | YGGCCR | 1 cut(s) | 187 |
| AcsI | RAATTY | 1 cut(s) | 346 |
| AflIII | ACRYGT | 1 cut(s) | 331 |
| AgsI | TTSAA | 1 cut(s) | 351 |
| AluBI | AGCT | 5 cut(s) | 177, 236, 311, 356, 360 |
| AluI | AGCT | 5 cut(s) | 177, 236, 311, 356, 360 |
| AoxI | GGCC | 2 cut(s) | 187, 222 |
| ApeKI | GCWGC | 3 cut(s) | 233, 236, 308 |
| ApoI | RAATTY | 1 cut(s) | 346 |
| AspLEI | GCGC | 1 cut(s) | 46 |
| AsuHPI | GGTGA | 2 cut(s) | 35, 179 |
| AsuNHI | GCTAGC | 1 cut(s) | 356 |
| AxyI | CCTNAGG | 1 cut(s) | 267 |
| BalI | TGGCCA | 1 cut(s) | 189 |
| BanI | GGYRCC | 2 cut(s) | 34, 59 |
| BbvCI | CCTCAGC | 1 cut(s) | 312 |
| BbvI | GCAGC | 3 cut(s) | 223, 245, 320 |
| BccI | CCATC | 2 cut(s) | 50, 179 |
| BclI | TGATCA | 1 cut(s) | 214 |
| BfaI | CTAG | 2 cut(s) | 357, 361 |
| BisI | GCNGC | 3 cut(s) | 234, 237, 309 |
| BlsI | GCNGC | 3 cut(s) | 235, 238, 310 |
| BmiI | GGNNCC | 2 cut(s) | 36, 61 |
| BmsI | GCATC | 1 cut(s) | 329 |
| BmtI | GCTAGC | 1 cut(s) | 360 |
| Bpu10I | CCTNAGC | 1 cut(s) | 312 |
| BpuEI | CTTGAG | 1 cut(s) | 163 |
| Bse21I | CCTNAGG | 1 cut(s) | 267 |
| BseGI | GGATG | 1 cut(s) | 190 |
| BseMII | CTCAG | 2 cut(s) | 281, 303 |
| BseXI | GCAGC | 3 cut(s) | 223, 245, 320 |
| BshFI | GGCC | 2 cut(s) | 189, 224 |
| BshNI | GGYRCC | 2 cut(s) | 34, 59 |
| BslFI | GGGAC | 1 cut(s) | 103 |
| BsmFI | GGGAC | 1 cut(s) | 103 |
| BsmI | GAATGC | 2 cut(s) | 75, 262 |
| BsnI | GGCC | 2 cut(s) | 189, 224 |
| Bsp143I | GATC | 1 cut(s) | 214 |
| BspANI | GGCC | 2 cut(s) | 189, 224 |
| BspCNI | CTCAG | 2 cut(s) | 280, 304 |
| BspLI | GGNNCC | 2 cut(s) | 36, 61 |
| BspOI | GCTAGC | 1 cut(s) | 360 |
| BspT107I | GGYRCC | 2 cut(s) | 34, 59 |
| BssMI | GATC | 1 cut(s) | 214 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 41 |
| BstC8I | GCNNGC | 1 cut(s) | 358 |
| BstDEI | CTNAG | 3 cut(s) | 252, 267, 312 |
| BstF5I | GGATG | 1 cut(s) | 190 |
| BstHHI | GCGC | 1 cut(s) | 46 |
| BstKTI | GATC | 1 cut(s) | 217 |
| BstMBI | GATC | 1 cut(s) | 214 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 41, 230, 317 |
| BstNSI | RCATGY | 2 cut(s) | 105, 335 |
| BstV1I | GCAGC | 3 cut(s) | 223, 245, 320 |
| Bsu36I | CCTNAGG | 1 cut(s) | 267 |
| BsuRI | GGCC | 2 cut(s) | 189, 224 |
| BtsCI | GGATG | 1 cut(s) | 190 |
| Cac8I | GCNNGC | 1 cut(s) | 358 |
| CfoI | GCGC | 1 cut(s) | 46 |
| CviAII | CATG | 2 cut(s) | 102, 332 |
| CviJI | RGCY | 8 cut(s) | 81, 177, 189, 224, 236, 311, 356, 360 |
| CviKI_1 | RGCY | 8 cut(s) | 81, 177, 189, 224, 236, 311, 356, 360 |
| DdeI | CTNAG | 3 cut(s) | 252, 267, 312 |
| DpnI | GATC | 1 cut(s) | 216 |
| DpnII | GATC | 1 cut(s) | 214 |
| EaeI | YGGCCR | 1 cut(s) | 187 |
| Eco81I | CCTNAGG | 1 cut(s) | 267 |
| EcoT22I | ATGCAT | 1 cut(s) | 107 |
| FaeI | CATG | 2 cut(s) | 105, 335 |
| FaiI | YATR | 7 cut(s) | 87, 103, 107, 112, 129, 292, 333 |
| FaqI | GGGAC | 1 cut(s) | 103 |
| FatI | CATG | 2 cut(s) | 101, 331 |
| FbaI | TGATCA | 1 cut(s) | 214 |
| Fnu4HI | GCNGC | 3 cut(s) | 234, 237, 309 |
| FokI | GGATG | 1 cut(s) | 197 |
| Fsp4HI | GCNGC | 3 cut(s) | 234, 237, 309 |
| FspBI | CTAG | 2 cut(s) | 357, 361 |
| GlaI | GCGC | 1 cut(s) | 45 |
| GluI | GCNGC | 3 cut(s) | 234, 237, 309 |
| HaeIII | GGCC | 2 cut(s) | 189, 224 |
| HhaI | GCGC | 1 cut(s) | 46 |
| Hin1II | CATG | 2 cut(s) | 105, 335 |
| Hin6I | GCGC | 1 cut(s) | 44 |
| HinP1I | GCGC | 1 cut(s) | 44 |
| HinfI | GANTC | 2 cut(s) | 17, 50 |
| HphI | GGTGA | 2 cut(s) | 35, 179 |
| Hpy188I | TCNGA | 1 cut(s) | 55 |
| HpyAV | CCTTC | 3 cut(s) | 115, 130, 164 |
| HpyCH4V | TGCA | 2 cut(s) | 105, 340 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 41, 230, 317 |
| HpyF3I | CTNAG | 3 cut(s) | 252, 267, 312 |
| Hsp92II | CATG | 2 cut(s) | 105, 335 |
| HspAI | GCGC | 1 cut(s) | 44 |
| Ksp22I | TGATCA | 1 cut(s) | 214 |
| Kzo9I | GATC | 1 cut(s) | 214 |
| LmnI | GCTCC | 1 cut(s) | 244 |
| LpnPI | CCDG | 7 cut(s) | 6, 54, 60, 131, 150, 206, 254 |
| Lsp1109I | GCAGC | 3 cut(s) | 223, 245, 320 |
| LweI | GCATC | 1 cut(s) | 329 |
| MaeI | CTAG | 2 cut(s) | 357, 361 |
| MaeIII | GTNAC | 2 cut(s) | 113, 327 |
| MalI | GATC | 1 cut(s) | 216 |
| MboI | GATC | 1 cut(s) | 214 |
| MboII | GAAGA | 2 cut(s) | 16, 106 |
| MlsI | TGGCCA | 1 cut(s) | 189 |
| MluCI | AATT | 2 cut(s) | 29, 346 |
| MluNI | TGGCCA | 1 cut(s) | 189 |
| MlyI | GAGTC | 1 cut(s) | 26 |
| MmeI | TCCRAC | 1 cut(s) | 170 |
| MnlI | CCTC | 5 cut(s) | 48, 195, 240, 276, 307 |
| Mox20I | TGGCCA | 1 cut(s) | 189 |
| Mph1103I | ATGCAT | 1 cut(s) | 107 |
| MscI | TGGCCA | 1 cut(s) | 189 |
| MslI | CAYNNNNRTG | 1 cut(s) | 68 |
| Msp20I | TGGCCA | 1 cut(s) | 189 |
| MspA1I | CMGCKG | 2 cut(s) | 236, 311 |
| Mva1269I | GAATGC | 2 cut(s) | 75, 262 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 41, 230, 317 |
| NdeII | GATC | 1 cut(s) | 214 |
| NheI | GCTAGC | 1 cut(s) | 356 |
| NlaIII | CATG | 2 cut(s) | 105, 335 |
| NlaIV | GGNNCC | 2 cut(s) | 36, 61 |
| NmuCI | GTSAC | 1 cut(s) | 327 |
| NsiI | ATGCAT | 1 cut(s) | 107 |
| NspI | RCATGY | 2 cut(s) | 105, 335 |
| PciI | ACATGT | 1 cut(s) | 331 |
| PctI | GAATGC | 2 cut(s) | 75, 262 |
| PfeI | GAWTC | 1 cut(s) | 50 |
| PkrI | GCNGC | 3 cut(s) | 235, 238, 310 |
| PleI | GAGTC | 1 cut(s) | 25 |
| PpsI | GAGTC | 1 cut(s) | 25 |
| PscI | ACATGT | 1 cut(s) | 331 |
| PspN4I | GGNNCC | 2 cut(s) | 36, 61 |
| PvuII | CAGCTG | 2 cut(s) | 236, 311 |
| RseI | CAYNNNNRTG | 1 cut(s) | 68 |
| SatI | GCNGC | 3 cut(s) | 234, 237, 309 |
| Sau3AI | GATC | 1 cut(s) | 214 |
| SchI | GAGTC | 1 cut(s) | 26 |
| SetI | ASST | 9 cut(s) | 40, 175, 179, 238, 251, 273, 313, 358, 362 |
| SfaNI | GCATC | 1 cut(s) | 329 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 68 |
| SmlI | CTYRAG | 1 cut(s) | 178 |
| SmoI | CTYRAG | 1 cut(s) | 178 |
| Sse9I | AATT | 2 cut(s) | 29, 346 |
| SspMI | CTAG | 2 cut(s) | 357, 361 |
| TasI | AATT | 2 cut(s) | 29, 346 |
| TfiI | GAWTC | 1 cut(s) | 50 |
| TseFI | GTSAC | 1 cut(s) | 327 |
| TseI | GCWGC | 3 cut(s) | 233, 236, 308 |
| Tsp45I | GTSAC | 1 cut(s) | 327 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| XapI | RAATTY | 1 cut(s) | 346 |
| XceI | RCATGY | 2 cut(s) | 105, 335 |
| XspI | CTAG | 2 cut(s) | 357, 361 |
| Zsp2I | ATGCAT | 1 cut(s) | 107 |