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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1787 |
| AccB1I | GGYRCC | 1 cut(s) | 15 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1908 |
| AciI | CCGC | 1 cut(s) | 121 |
| AclWI | GGATC | 9 cut(s) | 671, 1094, 1181, 1514, 1537, 1550, 1708, 1721, 1763 |
| AcsI | RAATTY | 5 cut(s) | 202, 461, 1361, 1565, 1980 |
| AcuI | CTGAAG | 3 cut(s) | 828, 858, 1799 |
| AdeI | CACNNNGTG | 1 cut(s) | 248 |
| AfaI | GTAC | 4 cut(s) | 412, 497, 1078, 1255 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 138, 177, 716, 857, 1814, 1837, 1908 |
| AflIII | ACRYGT | 1 cut(s) | 1195 |
| AhlI | ACTAGT | 1 cut(s) | 1079 |
| AjnI | CCWGG | 2 cut(s) | 394, 1946 |
| AluBI | AGCT | 5 cut(s) | 365, 794, 1604, 1704, 1868 |
| AluI | AGCT | 5 cut(s) | 365, 794, 1604, 1704, 1868 |
| Alw21I | GWGCWC | 1 cut(s) | 865 |
| AlwI | GGATC | 9 cut(s) | 671, 1094, 1181, 1514, 1537, 1550, 1708, 1721, 1763 |
| Ama87I | CYCGRG | 1 cut(s) | 1348 |
| AoxI | GGCC | 8 cut(s) | 29, 140, 367, 803, 848, 874, 995, 1805 |
| ApeKI | GCWGC | 2 cut(s) | 794, 1865 |
| ApoI | RAATTY | 5 cut(s) | 202, 461, 1361, 1565, 1980 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 760, 792 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 705, 1343 |
| AspS9I | GGNCC | 7 cut(s) | 30, 776, 803, 848, 875, 1843, 1944 |
| AsuC2I | CCSGG | 2 cut(s) | 67, 1055 |
| AsuHPI | GGTGA | 4 cut(s) | 665, 1052, 1097, 1196 |
| AvaI | CYCGRG | 1 cut(s) | 1348 |
| AvaII | GGWCC | 3 cut(s) | 776, 1843, 1944 |
| BaeGI | GKGCMC | 1 cut(s) | 1013 |
| BamHI | GGATCC | 2 cut(s) | 1542, 1713 |
| BanI | GGYRCC | 1 cut(s) | 15 |
| BbsI | GAAGAC | 2 cut(s) | 1509, 1650 |
| Bbv12I | GWGCWC | 1 cut(s) | 865 |
| BbvI | GCAGC | 2 cut(s) | 781, 1877 |
| BciT130I | CCWGG | 2 cut(s) | 396, 1948 |
| BciVI | GTATCC | 2 cut(s) | 384, 1332 |
| BcnI | CCSGG | 2 cut(s) | 67, 1055 |
| BcuI | ACTAGT | 1 cut(s) | 1079 |
| BfmI | CTRYAG | 4 cut(s) | 115, 210, 426, 1869 |
| BfuAI | ACCTGC | 1 cut(s) | 1787 |
| BfuI | GTATCC | 2 cut(s) | 384, 1332 |
| BisI | GCNGC | 3 cut(s) | 121, 795, 1866 |
| BlsI | GCNGC | 3 cut(s) | 122, 796, 1867 |
| BmcAI | AGTACT | 1 cut(s) | 1078 |
| Bme1390I | CCNGG | 4 cut(s) | 67, 396, 1055, 1948 |
| Bme18I | GGWCC | 3 cut(s) | 776, 1843, 1944 |
| BmeT110I | CYCGRG | 1 cut(s) | 1348 |
| BmgT120I | GGNCC | 7 cut(s) | 30, 776, 803, 848, 875, 1843, 1944 |
| BmiI | GGNNCC | 6 cut(s) | 17, 663, 708, 1544, 1715, 1844 |
| BmrFI | CCNGG | 4 cut(s) | 67, 396, 1055, 1948 |
| BmrI | ACTGGG | 2 cut(s) | 745, 1117 |
| BmsI | GCATC | 3 cut(s) | 624, 923, 1817 |
| BmuI | ACTGGG | 2 cut(s) | 745, 1117 |
| BpiI | GAAGAC | 2 cut(s) | 1509, 1650 |
| BpmI | CTGGAG | 1 cut(s) | 1323 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1629 |
| BpuEI | CTTGAG | 2 cut(s) | 849, 1682 |
| BpuMI | CCSGG | 2 cut(s) | 67, 1055 |
| BsaBI | GATNNNNATC | 2 cut(s) | 675, 1185 |
| BsaJI | CCNNGG | 2 cut(s) | 41, 871 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1446, 1476 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 138, 177, 716, 857, 1814, 1837, 1908 |
| Bse118I | RCCGGY | 1 cut(s) | 138 |
| Bse1I | ACTGG | 6 cut(s) | 386, 418, 665, 740, 1112, 1325 |
| Bse3DI | GCAATG | 5 cut(s) | 172, 778, 850, 1485, 1902 |
| Bse8I | GATNNNNATC | 2 cut(s) | 675, 1185 |
| BseBI | CCWGG | 2 cut(s) | 396, 1948 |
| BseDI | CCNNGG | 2 cut(s) | 41, 871 |
| BseJI | GATNNNNATC | 2 cut(s) | 675, 1185 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 138, 177, 716, 857, 1814, 1837, 1908 |
| BseMI | GCAATG | 5 cut(s) | 172, 778, 850, 1485, 1902 |
| BseMII | CTCAG | 2 cut(s) | 308, 1643 |
| BseNI | ACTGG | 6 cut(s) | 386, 418, 665, 740, 1112, 1325 |
| BseSI | GKGCMC | 1 cut(s) | 1013 |
| BseXI | GCAGC | 2 cut(s) | 781, 1877 |
| BsgI | GTGCAG | 1 cut(s) | 833 |
| BshFI | GGCC | 8 cut(s) | 31, 142, 369, 805, 850, 876, 997, 1807 |
| BshNI | GGYRCC | 1 cut(s) | 15 |
| BsiHKAI | GWGCWC | 1 cut(s) | 865 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1348 |
| BsiSI | CCGG | 4 cut(s) | 67, 132, 139, 1055 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 138, 177, 716, 857, 1814, 1837, 1908 |
| BsmI | GAATGC | 1 cut(s) | 1049 |
| BsnI | GGCC | 8 cut(s) | 31, 142, 369, 805, 850, 876, 997, 1807 |
| BsoBI | CYCGRG | 1 cut(s) | 1348 |
| Bsp1286I | GDGCHC | 2 cut(s) | 865, 1013 |
| Bsp1407I | TGTACA | 1 cut(s) | 495 |
| BspACI | CCGC | 1 cut(s) | 121 |
| BspANI | GGCC | 8 cut(s) | 31, 142, 369, 805, 850, 876, 997, 1807 |
| BspCNI | CTCAG | 2 cut(s) | 309, 1642 |
| BspHI | TCATGA | 1 cut(s) | 529 |
| BspLI | GGNNCC | 6 cut(s) | 17, 663, 708, 1544, 1715, 1844 |
| BspMI | ACCTGC | 1 cut(s) | 1787 |
| BspPI | GGATC | 9 cut(s) | 671, 1094, 1181, 1514, 1537, 1550, 1708, 1721, 1763 |
| BspT107I | GGYRCC | 1 cut(s) | 15 |
| BsrDI | GCAATG | 5 cut(s) | 172, 778, 850, 1485, 1902 |
| BsrFI | RCCGGY | 1 cut(s) | 138 |
| BsrGI | TGTACA | 1 cut(s) | 495 |
| BsrI | ACTGG | 6 cut(s) | 386, 418, 665, 740, 1112, 1325 |
| BssAI | RCCGGY | 1 cut(s) | 138 |
| BssECI | CCNNGG | 2 cut(s) | 41, 871 |
| BssT1I | CCWWGG | 1 cut(s) | 41 |
| Bst2UI | CCWGG | 2 cut(s) | 396, 1948 |
| Bst4CI | ACNGT | 5 cut(s) | 116, 211, 831, 1253, 1555 |
| Bst6I | CTCTTC | 4 cut(s) | 399, 696, 1290, 1334 |
| BstAUI | TGTACA | 1 cut(s) | 495 |
| BstC8I | GCNNGC | 3 cut(s) | 367, 1280, 1476 |
| BstDEI | CTNAG | 4 cut(s) | 317, 508, 1605, 1629 |
| BstDSI | CCRYGG | 1 cut(s) | 871 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 37, 148, 763, 811, 1275 |
| BstNI | CCWGG | 2 cut(s) | 396, 1948 |
| BstNSI | RCATGY | 3 cut(s) | 494, 590, 1199 |
| BstSCI | CCNGG | 4 cut(s) | 65, 394, 1053, 1946 |
| BstSFI | CTRYAG | 4 cut(s) | 115, 210, 426, 1869 |
| BstSLI | GKGCMC | 1 cut(s) | 1013 |
| BstV1I | GCAGC | 2 cut(s) | 781, 1877 |
| BstV2I | GAAGAC | 2 cut(s) | 1509, 1650 |
| BstX2I | RGATCY | 4 cut(s) | 676, 1542, 1713, 1755 |
| BstYI | RGATCY | 4 cut(s) | 676, 1542, 1713, 1755 |
| BsuI | GTATCC | 2 cut(s) | 384, 1332 |
| BsuRI | GGCC | 8 cut(s) | 31, 142, 369, 805, 850, 876, 997, 1807 |
| BtgI | CCRYGG | 1 cut(s) | 871 |
| BtsIMutI | CAGTG | 6 cut(s) | 112, 207, 432, 672, 1332, 1775 |
| BveI | ACCTGC | 1 cut(s) | 1787 |
| Cac8I | GCNNGC | 3 cut(s) | 367, 1280, 1476 |
| CciI | TCATGA | 1 cut(s) | 529 |
| Cfr10I | RCCGGY | 1 cut(s) | 138 |
| Cfr13I | GGNCC | 7 cut(s) | 30, 776, 803, 848, 875, 1843, 1944 |
| CsiI | ACCWGGT | 1 cut(s) | 1946 |
| Csp6I | GTAC | 4 cut(s) | 411, 496, 1077, 1254 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 627, 662 |
| CviQI | GTAC | 4 cut(s) | 411, 496, 1077, 1254 |
| DdeI | CTNAG | 4 cut(s) | 317, 508, 1605, 1629 |
| DraIII | CACNNNGTG | 1 cut(s) | 248 |
| Eam1104I | CTCTTC | 4 cut(s) | 399, 696, 1290, 1334 |
| EarI | CTCTTC | 4 cut(s) | 399, 696, 1290, 1334 |
| Eco130I | CCWWGG | 1 cut(s) | 41 |
| Eco47I | GGWCC | 3 cut(s) | 776, 1843, 1944 |
| Eco57I | CTGAAG | 3 cut(s) | 828, 858, 1799 |
| Eco88I | CYCGRG | 1 cut(s) | 1348 |
| EcoRI | GAATTC | 1 cut(s) | 1361 |
| EcoRII | CCWGG | 2 cut(s) | 394, 1946 |
| EcoT14I | CCWWGG | 1 cut(s) | 41 |
| ErhI | CCWWGG | 1 cut(s) | 41 |
| FauNDI | CATATG | 2 cut(s) | 1174, 1470 |
| Fnu4HI | GCNGC | 3 cut(s) | 121, 795, 1866 |
| Fsp4HI | GCNGC | 3 cut(s) | 121, 795, 1866 |
| GluI | GCNGC | 3 cut(s) | 121, 795, 1866 |
| GsuI | CTGGAG | 1 cut(s) | 1323 |
| HaeIII | GGCC | 8 cut(s) | 31, 142, 369, 805, 850, 876, 997, 1807 |
| HapII | CCGG | 4 cut(s) | 67, 132, 139, 1055 |
| HincII | GTYRAC | 2 cut(s) | 834, 1856 |
| HindII | GTYRAC | 2 cut(s) | 834, 1856 |
| HinfI | GANTC | 5 cut(s) | 164, 1091, 1221, 1298, 1584 |
| HpaII | CCGG | 4 cut(s) | 67, 132, 139, 1055 |
| HphI | GGTGA | 4 cut(s) | 665, 1052, 1097, 1196 |
| Hpy166II | GTNNAC | 5 cut(s) | 496, 827, 834, 1162, 1856 |
| Hpy188I | TCNGA | 5 cut(s) | 1096, 1226, 1240, 1427, 2014 |
| Hpy188III | TCNNGA | 9 cut(s) | 308, 530, 779, 924, 1190, 1302, 1348, 1417, 1588 |
| Hpy8I | GTNNAC | 5 cut(s) | 496, 827, 834, 1162, 1856 |
| HpyCH4III | ACNGT | 5 cut(s) | 116, 211, 831, 1253, 1555 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 37, 148, 763, 811, 1275 |
| HpyF3I | CTNAG | 4 cut(s) | 317, 508, 1605, 1629 |
| LmnI | GCTCC | 2 cut(s) | 661, 1071 |
| Lsp1109I | GCAGC | 2 cut(s) | 781, 1877 |
| LweI | GCATC | 3 cut(s) | 624, 923, 1817 |
| MabI | ACCWGGT | 1 cut(s) | 1946 |
| MaeIII | GTNAC | 4 cut(s) | 322, 430, 1127, 1738 |
| MfeI | CAATTG | 2 cut(s) | 591, 1525 |
| MflI | RGATCY | 4 cut(s) | 676, 1542, 1713, 1755 |
| MhlI | GDGCHC | 2 cut(s) | 865, 1013 |
| MlyI | GAGTC | 2 cut(s) | 173, 1307 |
| MmeI | TCCRAC | 3 cut(s) | 1432, 1765, 1922 |
| MroXI | GAANNNNTTC | 2 cut(s) | 705, 1343 |
| MseI | TTAA | 5 cut(s) | 294, 333, 422, 459, 627 |
| MslI | CAYNNNNRTG | 3 cut(s) | 528, 534, 552 |
| MspA1I | CMGCKG | 1 cut(s) | 1868 |
| MspI | CCGG | 4 cut(s) | 67, 132, 139, 1055 |
| MspR9I | CCNGG | 4 cut(s) | 67, 396, 1055, 1948 |
| MunI | CAATTG | 2 cut(s) | 591, 1525 |
| Mva1269I | GAATGC | 1 cut(s) | 1049 |
| MvaI | CCWGG | 2 cut(s) | 396, 1948 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 37, 148, 763, 811, 1275 |
| NciI | CCSGG | 2 cut(s) | 67, 1055 |
| NdeI | CATATG | 2 cut(s) | 1174, 1470 |
| NlaIV | GGNNCC | 6 cut(s) | 17, 663, 708, 1544, 1715, 1844 |
| NmuCI | GTSAC | 4 cut(s) | 322, 430, 1127, 1738 |
| NspI | RCATGY | 3 cut(s) | 494, 590, 1199 |
| PaeR7I | CTCGAG | 1 cut(s) | 1348 |
| PagI | TCATGA | 1 cut(s) | 529 |
| PciI | ACATGT | 1 cut(s) | 1195 |
| PctI | GAATGC | 1 cut(s) | 1049 |
| PdmI | GAANNNNTTC | 2 cut(s) | 705, 1343 |
| PfeI | GAWTC | 3 cut(s) | 1091, 1221, 1584 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1908 |
| PkrI | GCNGC | 3 cut(s) | 122, 796, 1867 |
| PleI | GAGTC | 2 cut(s) | 172, 1306 |
| PpsI | GAGTC | 2 cut(s) | 172, 1306 |
| PscI | ACATGT | 1 cut(s) | 1195 |
| Psp6I | CCWGG | 2 cut(s) | 394, 1946 |
| PspGI | CCWGG | 2 cut(s) | 394, 1946 |
| PspN4I | GGNNCC | 6 cut(s) | 17, 663, 708, 1544, 1715, 1844 |
| PspPI | GGNCC | 7 cut(s) | 30, 776, 803, 848, 875, 1843, 1944 |
| PsuI | RGATCY | 4 cut(s) | 676, 1542, 1713, 1755 |
| PvuII | CAGCTG | 1 cut(s) | 1868 |
| RsaI | GTAC | 4 cut(s) | 412, 497, 1078, 1255 |
| RsaNI | GTAC | 4 cut(s) | 411, 496, 1077, 1254 |
| RseI | CAYNNNNRTG | 3 cut(s) | 528, 534, 552 |
| SaqAI | TTAA | 5 cut(s) | 294, 333, 422, 459, 627 |
| SatI | GCNGC | 3 cut(s) | 121, 795, 1866 |
| Sau96I | GGNCC | 7 cut(s) | 30, 776, 803, 848, 875, 1843, 1944 |
| ScaI | AGTACT | 1 cut(s) | 1078 |
| SchI | GAGTC | 2 cut(s) | 173, 1307 |
| ScrFI | CCNGG | 4 cut(s) | 67, 396, 1055, 1948 |
| SduI | GDGCHC | 2 cut(s) | 865, 1013 |
| SexAI | ACCWGGT | 1 cut(s) | 1946 |
| SfaNI | GCATC | 3 cut(s) | 624, 923, 1817 |
| SfcI | CTRYAG | 4 cut(s) | 115, 210, 426, 1869 |
| Sfr274I | CTCGAG | 1 cut(s) | 1348 |
| SinI | GGWCC | 3 cut(s) | 776, 1843, 1944 |
| SlaI | CTCGAG | 1 cut(s) | 1348 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 528, 534, 552 |
| SmlI | CTYRAG | 3 cut(s) | 864, 1348, 1661 |
| SmoI | CTYRAG | 3 cut(s) | 864, 1348, 1661 |
| SpeI | ACTAGT | 1 cut(s) | 1079 |
| SsiI | CCGC | 1 cut(s) | 121 |
| StyD4I | CCNGG | 4 cut(s) | 65, 394, 1053, 1946 |
| StyI | CCWWGG | 1 cut(s) | 41 |
| TaaI | ACNGT | 5 cut(s) | 116, 211, 831, 1253, 1555 |
| TaqI | TCGA | 2 cut(s) | 361, 1349 |
| TatI | WGTACW | 2 cut(s) | 495, 1076 |
| TauI | GCSGC | 1 cut(s) | 123 |
| TfiI | GAWTC | 3 cut(s) | 1091, 1221, 1584 |
| Tru1I | TTAA | 5 cut(s) | 294, 333, 422, 459, 627 |
| Tru9I | TTAA | 5 cut(s) | 294, 333, 422, 459, 627 |
| TscAI | CASTG | 6 cut(s) | 119, 214, 439, 672, 1332, 1782 |
| TseFI | GTSAC | 4 cut(s) | 322, 430, 1127, 1738 |
| TseI | GCWGC | 2 cut(s) | 794, 1865 |
| Tsp45I | GTSAC | 4 cut(s) | 322, 430, 1127, 1738 |
| TspRI | CASTG | 6 cut(s) | 119, 214, 439, 672, 1332, 1782 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1908 |
| VpaK11BI | GGWCC | 3 cut(s) | 776, 1843, 1944 |
| XapI | RAATTY | 5 cut(s) | 202, 461, 1361, 1565, 1980 |
| XceI | RCATGY | 3 cut(s) | 494, 590, 1199 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1553 |
| XhoI | CTCGAG | 1 cut(s) | 1348 |
| XmnI | GAANNNNTTC | 2 cut(s) | 705, 1343 |
| ZrmI | AGTACT | 1 cut(s) | 1078 |