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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 795 |
| AccIII | TCCGGA | 1 cut(s) | 845 |
| AciI | CCGC | 2 cut(s) | 793, 795 |
| AclWI | GGATC | 1 cut(s) | 818 |
| AcoI | YGGCCR | 2 cut(s) | 796, 800 |
| AfaI | GTAC | 2 cut(s) | 168, 823 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 286 |
| AgsI | TTSAA | 4 cut(s) | 65, 81, 340, 875 |
| AjnI | CCWGG | 1 cut(s) | 781 |
| Alw26I | GTCTC | 1 cut(s) | 783 |
| AlwI | GGATC | 1 cut(s) | 818 |
| Aor13HI | TCCGGA | 1 cut(s) | 845 |
| AoxI | GGCC | 4 cut(s) | 314, 796, 800, 805 |
| ApeKI | GCWGC | 6 cut(s) | 238, 428, 599, 644, 647, 851 |
| AspS9I | GGNCC | 2 cut(s) | 35, 805 |
| AsuC2I | CCSGG | 1 cut(s) | 804 |
| AsuHPI | GGTGA | 3 cut(s) | 218, 301, 665 |
| AvaII | GGWCC | 1 cut(s) | 35 |
| AxyI | CCTNAGG | 1 cut(s) | 639 |
| BbvI | GCAGC | 6 cut(s) | 225, 415, 586, 631, 659, 863 |
| BccI | CCATC | 3 cut(s) | 95, 328, 878 |
| BceAI | ACGGC | 1 cut(s) | 844 |
| BciT130I | CCWGG | 1 cut(s) | 783 |
| BcnI | CCSGG | 1 cut(s) | 804 |
| BcoDI | GTCTC | 1 cut(s) | 783 |
| BfaI | CTAG | 7 cut(s) | 282, 350, 372, 567, 711, 903, 918 |
| BfmI | CTRYAG | 1 cut(s) | 645 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 804 |
| BisI | GCNGC | 7 cut(s) | 239, 429, 600, 645, 648, 796, 852 |
| BlpI | GCTNAGC | 1 cut(s) | 531 |
| BlsI | GCNGC | 7 cut(s) | 240, 430, 601, 646, 649, 797, 853 |
| Bme1390I | CCNGG | 2 cut(s) | 783, 804 |
| Bme18I | GGWCC | 1 cut(s) | 35 |
| BmgT120I | GGNCC | 2 cut(s) | 35, 805 |
| BmiI | GGNNCC | 3 cut(s) | 130, 666, 894 |
| BmrFI | CCNGG | 2 cut(s) | 783, 804 |
| BmsI | GCATC | 2 cut(s) | 562, 851 |
| Bpu10I | CCTNAGC | 1 cut(s) | 684 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 531 |
| BpuMI | CCSGG | 1 cut(s) | 804 |
| BsaJI | CCNNGG | 2 cut(s) | 719, 793 |
| BsaWI | WCCGGW | 1 cut(s) | 845 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 102, 132 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 286 |
| Bse118I | RCCGGY | 1 cut(s) | 798 |
| Bse1I | ACTGG | 1 cut(s) | 132 |
| Bse21I | CCTNAGG | 1 cut(s) | 639 |
| Bse3DI | GCAATG | 1 cut(s) | 94 |
| BseAI | TCCGGA | 1 cut(s) | 845 |
| BseBI | CCWGG | 1 cut(s) | 783 |
| BseDI | CCNNGG | 2 cut(s) | 719, 793 |
| BseGI | GGATG | 2 cut(s) | 106, 842 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 286 |
| BseMI | GCAATG | 1 cut(s) | 94 |
| BseMII | CTCAG | 4 cut(s) | 375, 498, 522, 615 |
| BseNI | ACTGG | 1 cut(s) | 132 |
| BseRI | GAGGAG | 2 cut(s) | 416, 631 |
| BseX3I | CGGCCG | 2 cut(s) | 796, 800 |
| BseXI | GCAGC | 6 cut(s) | 225, 415, 586, 631, 659, 863 |
| Bsh1236I | CGCG | 1 cut(s) | 795 |
| Bsh1285I | CGRYCG | 2 cut(s) | 799, 803 |
| BshFI | GGCC | 4 cut(s) | 316, 798, 802, 807 |
| BsiEI | CGRYCG | 2 cut(s) | 799, 803 |
| BsiSI | CCGG | 4 cut(s) | 799, 803, 808, 846 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 286 |
| BsmAI | GTCTC | 1 cut(s) | 783 |
| BsnI | GGCC | 4 cut(s) | 316, 798, 802, 807 |
| Bsp13I | TCCGGA | 1 cut(s) | 845 |
| Bsp143I | GATC | 2 cut(s) | 58, 810 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 531 |
| BspACI | CCGC | 2 cut(s) | 793, 795 |
| BspANI | GGCC | 4 cut(s) | 316, 798, 802, 807 |
| BspCNI | CTCAG | 4 cut(s) | 376, 499, 523, 616 |
| BspEI | TCCGGA | 1 cut(s) | 845 |
| BspFNI | CGCG | 1 cut(s) | 795 |
| BspLI | GGNNCC | 3 cut(s) | 130, 666, 894 |
| BspMAI | CTGCAG | 1 cut(s) | 649 |
| BspPI | GGATC | 1 cut(s) | 818 |
| BsrDI | GCAATG | 1 cut(s) | 94 |
| BsrFI | RCCGGY | 1 cut(s) | 798 |
| BsrI | ACTGG | 1 cut(s) | 132 |
| BssAI | RCCGGY | 1 cut(s) | 798 |
| BssECI | CCNNGG | 2 cut(s) | 719, 793 |
| BssMI | GATC | 2 cut(s) | 58, 810 |
| BssT1I | CCWWGG | 1 cut(s) | 719 |
| Bst2UI | CCWGG | 1 cut(s) | 783 |
| Bst4CI | ACNGT | 4 cut(s) | 301, 594, 821, 881 |
| Bst6I | CTCTTC | 3 cut(s) | 359, 506, 554 |
| BstC8I | GCNNGC | 1 cut(s) | 800 |
| BstDEI | CTNAG | 7 cut(s) | 384, 507, 531, 536, 624, 639, 684 |
| BstDSI | CCRYGG | 1 cut(s) | 793 |
| BstF5I | GGATG | 2 cut(s) | 106, 842 |
| BstFNI | CGCG | 1 cut(s) | 795 |
| BstKTI | GATC | 2 cut(s) | 61, 813 |
| BstMAI | GTCTC | 1 cut(s) | 783 |
| BstMBI | GATC | 2 cut(s) | 58, 810 |
| BstMCI | CGRYCG | 2 cut(s) | 799, 803 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 93, 244, 332, 572, 715, 804, 848, 899 |
| BstNI | CCWGG | 1 cut(s) | 783 |
| BstSCI | CCNGG | 2 cut(s) | 781, 802 |
| BstSFI | CTRYAG | 1 cut(s) | 645 |
| BstUI | CGCG | 1 cut(s) | 795 |
| BstV1I | GCAGC | 6 cut(s) | 225, 415, 586, 631, 659, 863 |
| BstZI | CGGCCG | 2 cut(s) | 796, 800 |
| Bsu36I | CCTNAGG | 1 cut(s) | 639 |
| BsuRI | GGCC | 4 cut(s) | 316, 798, 802, 807 |
| BtgI | CCRYGG | 1 cut(s) | 793 |
| BtsCI | GGATG | 2 cut(s) | 106, 842 |
| BtsIMutI | CAGTG | 2 cut(s) | 297, 886 |
| Cac8I | GCNNGC | 1 cut(s) | 800 |
| Cfr10I | RCCGGY | 1 cut(s) | 798 |
| Cfr13I | GGNCC | 2 cut(s) | 35, 805 |
| Cfr42I | CCGCGG | 1 cut(s) | 796 |
| Csp6I | GTAC | 2 cut(s) | 167, 822 |
| CviAII | CATG | 3 cut(s) | 178, 192, 775 |
| CviQI | GTAC | 2 cut(s) | 167, 822 |
| DdeI | CTNAG | 7 cut(s) | 384, 507, 531, 536, 624, 639, 684 |
| DpnI | GATC | 2 cut(s) | 60, 812 |
| DpnII | GATC | 2 cut(s) | 58, 810 |
| EaeI | YGGCCR | 2 cut(s) | 796, 800 |
| EagI | CGGCCG | 2 cut(s) | 796, 800 |
| Eam1104I | CTCTTC | 3 cut(s) | 359, 506, 554 |
| EarI | CTCTTC | 3 cut(s) | 359, 506, 554 |
| EclXI | CGGCCG | 2 cut(s) | 796, 800 |
| Eco130I | CCWWGG | 1 cut(s) | 719 |
| Eco47I | GGWCC | 1 cut(s) | 35 |
| Eco52I | CGGCCG | 2 cut(s) | 796, 800 |
| Eco81I | CCTNAGG | 1 cut(s) | 639 |
| EcoRII | CCWGG | 1 cut(s) | 781 |
| EcoT14I | CCWWGG | 1 cut(s) | 719 |
| EcoT22I | ATGCAT | 1 cut(s) | 577 |
| ErhI | CCWWGG | 1 cut(s) | 719 |
| FaeI | CATG | 3 cut(s) | 181, 195, 778 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 319, 351, 487, 519, 519, 551 |
| FatI | CATG | 3 cut(s) | 177, 191, 774 |
| FauNDI | CATATG | 1 cut(s) | 249 |
| Fnu4HI | GCNGC | 7 cut(s) | 239, 429, 600, 645, 648, 796, 852 |
| FokI | GGATG | 2 cut(s) | 113, 829 |
| FseI | GGCCGGCC | 1 cut(s) | 802 |
| Fsp4HI | GCNGC | 7 cut(s) | 239, 429, 600, 645, 648, 796, 852 |
| FspBI | CTAG | 7 cut(s) | 282, 350, 372, 567, 711, 903, 918 |
| GluI | GCNGC | 7 cut(s) | 239, 429, 600, 645, 648, 796, 852 |
| HaeIII | GGCC | 4 cut(s) | 316, 798, 802, 807 |
| HapII | CCGG | 4 cut(s) | 799, 803, 808, 846 |
| Hin1II | CATG | 3 cut(s) | 181, 195, 778 |
| HindIII | AAGCTT | 1 cut(s) | 333 |
| HinfI | GANTC | 2 cut(s) | 445, 867 |
| HpaII | CCGG | 4 cut(s) | 799, 803, 808, 846 |
| HphI | GGTGA | 3 cut(s) | 218, 301, 665 |
| Hpy166II | GTNNAC | 3 cut(s) | 141, 185, 673 |
| Hpy188I | TCNGA | 2 cut(s) | 160, 508 |
| Hpy188III | TCNNGA | 4 cut(s) | 26, 62, 745, 846 |
| Hpy8I | GTNNAC | 3 cut(s) | 141, 185, 673 |
| HpyAV | CCTTC | 3 cut(s) | 279, 384, 655 |
| HpyCH4III | ACNGT | 4 cut(s) | 301, 594, 821, 881 |
| HpyCH4V | TGCA | 5 cut(s) | 197, 241, 326, 575, 647 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 93, 244, 332, 572, 715, 804, 848, 899 |
| HpyF3I | CTNAG | 7 cut(s) | 384, 507, 531, 536, 624, 639, 684 |
| Hsp92II | CATG | 3 cut(s) | 181, 195, 778 |
| Kpn2I | TCCGGA | 1 cut(s) | 845 |
| KroI | GCCGGC | 1 cut(s) | 798 |
| KroNI | GCCGGC | 1 cut(s) | 800 |
| KspI | CCGCGG | 1 cut(s) | 796 |
| Kzo9I | GATC | 2 cut(s) | 58, 810 |
| LmnI | GCTCC | 4 cut(s) | 128, 664, 848, 898 |
| Lsp1109I | GCAGC | 6 cut(s) | 225, 415, 586, 631, 659, 863 |
| LweI | GCATC | 2 cut(s) | 562, 851 |
| MaeI | CTAG | 7 cut(s) | 282, 350, 372, 567, 711, 903, 918 |
| MaeIII | GTNAC | 2 cut(s) | 254, 730 |
| MalI | GATC | 2 cut(s) | 60, 812 |
| MboI | GATC | 2 cut(s) | 58, 810 |
| MboII | GAAGA | 7 cut(s) | 19, 77, 376, 488, 523, 536, 571 |
| MluCI | AATT | 4 cut(s) | 434, 461, 605, 736 |
| MlyI | GAGTC | 1 cut(s) | 454 |
| MmeI | TCCRAC | 1 cut(s) | 920 |
| Mph1103I | ATGCAT | 1 cut(s) | 577 |
| MroI | TCCGGA | 1 cut(s) | 845 |
| MroNI | GCCGGC | 1 cut(s) | 798 |
| MseI | TTAA | 1 cut(s) | 303 |
| MslI | CAYNNNNRTG | 1 cut(s) | 190 |
| MspA1I | CMGCKG | 2 cut(s) | 795, 854 |
| MspI | CCGG | 4 cut(s) | 799, 803, 808, 846 |
| MspR9I | CCNGG | 2 cut(s) | 783, 804 |
| MvaI | CCWGG | 1 cut(s) | 783 |
| MvnI | CGCG | 1 cut(s) | 795 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 93, 244, 332, 572, 715, 804, 848, 899 |
| NaeI | GCCGGC | 1 cut(s) | 800 |
| NciI | CCSGG | 1 cut(s) | 804 |
| NdeI | CATATG | 1 cut(s) | 249 |
| NdeII | GATC | 2 cut(s) | 58, 810 |
| NgoMIV | GCCGGC | 1 cut(s) | 798 |
| NlaIII | CATG | 3 cut(s) | 181, 195, 778 |
| NlaIV | GGNNCC | 3 cut(s) | 130, 666, 894 |
| NsiI | ATGCAT | 1 cut(s) | 577 |
| PdiI | GCCGGC | 1 cut(s) | 800 |
| PfeI | GAWTC | 1 cut(s) | 867 |
| PkrI | GCNGC | 7 cut(s) | 240, 430, 601, 646, 649, 797, 853 |
| PleI | GAGTC | 1 cut(s) | 453 |
| PpsI | GAGTC | 1 cut(s) | 453 |
| Psp6I | CCWGG | 1 cut(s) | 781 |
| PspGI | CCWGG | 1 cut(s) | 781 |
| PspN4I | GGNNCC | 3 cut(s) | 130, 666, 894 |
| PspPI | GGNCC | 2 cut(s) | 35, 805 |
| PstI | CTGCAG | 1 cut(s) | 649 |
| PvuII | CAGCTG | 1 cut(s) | 854 |
| RigI | GGCCGGCC | 1 cut(s) | 802 |
| RsaI | GTAC | 2 cut(s) | 168, 823 |
| RsaNI | GTAC | 2 cut(s) | 167, 822 |
| RseI | CAYNNNNRTG | 1 cut(s) | 190 |
| SacII | CCGCGG | 1 cut(s) | 796 |
| SaqAI | TTAA | 1 cut(s) | 303 |
| SatI | GCNGC | 7 cut(s) | 239, 429, 600, 645, 648, 796, 852 |
| Sau3AI | GATC | 2 cut(s) | 58, 810 |
| Sau96I | GGNCC | 2 cut(s) | 35, 805 |
| SchI | GAGTC | 1 cut(s) | 454 |
| ScrFI | CCNGG | 2 cut(s) | 783, 804 |
| SfaNI | GCATC | 2 cut(s) | 562, 851 |
| SfcI | CTRYAG | 1 cut(s) | 645 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 804 |
| Sfr303I | CCGCGG | 1 cut(s) | 796 |
| SgrBI | CCGCGG | 1 cut(s) | 796 |
| SinI | GGWCC | 1 cut(s) | 35 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 190 |
| Sse9I | AATT | 4 cut(s) | 434, 461, 605, 736 |
| SsiI | CCGC | 2 cut(s) | 793, 795 |
| SspMI | CTAG | 7 cut(s) | 282, 350, 372, 567, 711, 903, 918 |
| StyD4I | CCNGG | 2 cut(s) | 781, 802 |
| StyI | CCWWGG | 1 cut(s) | 719 |
| TaaI | ACNGT | 4 cut(s) | 301, 594, 821, 881 |
| TaqI | TCGA | 1 cut(s) | 744 |
| TasI | AATT | 4 cut(s) | 434, 461, 605, 736 |
| TatI | WGTACW | 1 cut(s) | 821 |
| TauI | GCSGC | 1 cut(s) | 798 |
| TfiI | GAWTC | 1 cut(s) | 867 |
| Tru1I | TTAA | 1 cut(s) | 303 |
| Tru9I | TTAA | 1 cut(s) | 303 |
| TscAI | CASTG | 2 cut(s) | 304, 886 |
| TseI | GCWGC | 6 cut(s) | 238, 428, 599, 644, 647, 851 |
| TspDTI | ATGAA | 1 cut(s) | 763 |
| TspRI | CASTG | 2 cut(s) | 304, 886 |
| VpaK11BI | GGWCC | 1 cut(s) | 35 |
| XspI | CTAG | 7 cut(s) | 282, 350, 372, 567, 711, 903, 918 |
| Zsp2I | ATGCAT | 1 cut(s) | 577 |