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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 564 |
| Acc65I | GGTACC | 1 cut(s) | 318 |
| AccB1I | GGYRCC | 2 cut(s) | 199, 318 |
| AclWI | GGATC | 3 cut(s) | 148, 161, 873 |
| AcoI | YGGCCR | 1 cut(s) | 80 |
| AcsI | RAATTY | 2 cut(s) | 49, 86 |
| AfaI | GTAC | 1 cut(s) | 320 |
| AfeI | AGCGCT | 1 cut(s) | 502 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 707 |
| AgsI | TTSAA | 5 cut(s) | 91, 308, 616, 673, 730 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 938, 970 |
| AluBI | AGCT | 5 cut(s) | 164, 452, 464, 571, 631 |
| AluI | AGCT | 5 cut(s) | 164, 452, 464, 571, 631 |
| AlwI | GGATC | 3 cut(s) | 148, 161, 873 |
| Aor51HI | AGCGCT | 1 cut(s) | 502 |
| AoxI | GGCC | 1 cut(s) | 80 |
| ApeKI | GCWGC | 3 cut(s) | 164, 449, 631 |
| ApoI | RAATTY | 2 cut(s) | 49, 86 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 345 |
| Asp718I | GGTACC | 1 cut(s) | 318 |
| AspA2I | CCTAGG | 1 cut(s) | 149 |
| AspLEI | GCGC | 2 cut(s) | 503, 565 |
| AspS9I | GGNCC | 1 cut(s) | 580 |
| AvaII | GGWCC | 1 cut(s) | 580 |
| AvrII | CCTAGG | 1 cut(s) | 149 |
| BalI | TGGCCA | 1 cut(s) | 82 |
| BamHI | GGATCC | 1 cut(s) | 153 |
| BanI | GGYRCC | 2 cut(s) | 199, 318 |
| BbvCI | CCTCAGC | 1 cut(s) | 453 |
| BbvI | GCAGC | 3 cut(s) | 151, 461, 618 |
| BccI | CCATC | 4 cut(s) | 56, 670, 710, 811 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 257, 291, 924, 958 |
| BclI | TGATCA | 1 cut(s) | 966 |
| BfaI | CTAG | 4 cut(s) | 150, 518, 546, 713 |
| BfoI | RGCGCY | 1 cut(s) | 504 |
| BisI | GCNGC | 3 cut(s) | 165, 450, 632 |
| BlnI | CCTAGG | 1 cut(s) | 149 |
| BlsI | GCNGC | 3 cut(s) | 166, 451, 633 |
| Bme18I | GGWCC | 1 cut(s) | 580 |
| BmgT120I | GGNCC | 1 cut(s) | 580 |
| BmiI | GGNNCC | 5 cut(s) | 155, 201, 320, 581, 582 |
| BmsI | GCATC | 3 cut(s) | 276, 287, 763 |
| BpmI | CTGGAG | 1 cut(s) | 900 |
| Bpu10I | CCTNAGC | 3 cut(s) | 453, 465, 661 |
| BpuEI | CTTGAG | 1 cut(s) | 371 |
| BsaJI | CCNNGG | 3 cut(s) | 116, 149, 444 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 938, 968 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 707 |
| Bse1I | ACTGG | 3 cut(s) | 40, 322, 883 |
| Bse3DI | GCAATG | 2 cut(s) | 133, 813 |
| BseDI | CCNNGG | 3 cut(s) | 116, 149, 444 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 707 |
| BseMI | GCAATG | 2 cut(s) | 133, 813 |
| BseMII | CTCAG | 2 cut(s) | 444, 563 |
| BseNI | ACTGG | 3 cut(s) | 40, 322, 883 |
| BseXI | GCAGC | 3 cut(s) | 151, 461, 618 |
| BseYI | CCCAGC | 1 cut(s) | 583 |
| BshFI | GGCC | 1 cut(s) | 82 |
| BshNI | GGYRCC | 2 cut(s) | 199, 318 |
| BslFI | GGGAC | 2 cut(s) | 593, 723 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 707 |
| BsmFI | GGGAC | 2 cut(s) | 593, 723 |
| BsnI | GGCC | 1 cut(s) | 82 |
| Bsp143I | GATC | 3 cut(s) | 153, 865, 966 |
| Bsp19I | CCATGG | 1 cut(s) | 444 |
| BspANI | GGCC | 1 cut(s) | 82 |
| BspCNI | CTCAG | 2 cut(s) | 445, 564 |
| BspLI | GGNNCC | 5 cut(s) | 155, 201, 320, 581, 582 |
| BspPI | GGATC | 3 cut(s) | 148, 161, 873 |
| BspT107I | GGYRCC | 2 cut(s) | 199, 318 |
| BsrDI | GCAATG | 2 cut(s) | 133, 813 |
| BsrI | ACTGG | 3 cut(s) | 40, 322, 883 |
| BssECI | CCNNGG | 3 cut(s) | 116, 149, 444 |
| BssMI | GATC | 3 cut(s) | 153, 865, 966 |
| BssT1I | CCWWGG | 2 cut(s) | 149, 444 |
| Bst4CI | ACNGT | 6 cut(s) | 120, 260, 335, 364, 595, 852 |
| BstC8I | GCNNGC | 2 cut(s) | 462, 483 |
| BstDEI | CTNAG | 6 cut(s) | 158, 453, 465, 495, 572, 661 |
| BstDSI | CCRYGG | 2 cut(s) | 116, 444 |
| BstH2I | RGCGCY | 1 cut(s) | 504 |
| BstHHI | GCGC | 2 cut(s) | 503, 565 |
| BstKTI | GATC | 3 cut(s) | 156, 868, 969 |
| BstMBI | GATC | 3 cut(s) | 153, 865, 966 |
| BstNSI | RCATGY | 1 cut(s) | 939 |
| BstV1I | GCAGC | 3 cut(s) | 151, 461, 618 |
| BstX2I | RGATCY | 2 cut(s) | 153, 865 |
| BstYI | RGATCY | 2 cut(s) | 153, 865 |
| BsuRI | GGCC | 1 cut(s) | 82 |
| BtgI | CCRYGG | 2 cut(s) | 116, 444 |
| BtsIMutI | CAGTG | 2 cut(s) | 591, 876 |
| Cac8I | GCNNGC | 2 cut(s) | 462, 483 |
| CfoI | GCGC | 2 cut(s) | 503, 565 |
| Cfr13I | GGNCC | 1 cut(s) | 580 |
| Csp6I | GTAC | 1 cut(s) | 319 |
| CviAII | CATG | 5 cut(s) | 106, 293, 445, 566, 936 |
| CviJI | RGCY | 9 cut(s) | 82, 164, 239, 452, 464, 571, 631, 720, 800 |
| CviKI_1 | RGCY | 9 cut(s) | 82, 164, 239, 452, 464, 571, 631, 720, 800 |
| CviQI | GTAC | 1 cut(s) | 319 |
| DdeI | CTNAG | 6 cut(s) | 158, 453, 465, 495, 572, 661 |
| DpnI | GATC | 3 cut(s) | 155, 867, 968 |
| DpnII | GATC | 3 cut(s) | 153, 865, 966 |
| DraI | TTTAAA | 1 cut(s) | 643 |
| EaeI | YGGCCR | 1 cut(s) | 80 |
| Eco130I | CCWWGG | 2 cut(s) | 149, 444 |
| Eco32I | GATATC | 1 cut(s) | 601 |
| Eco47I | GGWCC | 1 cut(s) | 580 |
| Eco47III | AGCGCT | 1 cut(s) | 502 |
| EcoO109I | RGGNCCY | 1 cut(s) | 580 |
| EcoRI | GAATTC | 1 cut(s) | 86 |
| EcoRV | GATATC | 1 cut(s) | 601 |
| EcoT14I | CCWWGG | 2 cut(s) | 149, 444 |
| EcoT22I | ATGCAT | 1 cut(s) | 280 |
| ErhI | CCWWGG | 2 cut(s) | 149, 444 |
| FaeI | CATG | 5 cut(s) | 109, 296, 448, 569, 939 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 912, 944 |
| FaqI | GGGAC | 2 cut(s) | 593, 723 |
| FatI | CATG | 5 cut(s) | 105, 292, 444, 565, 935 |
| FauNDI | CATATG | 1 cut(s) | 739 |
| FbaI | TGATCA | 1 cut(s) | 966 |
| Fnu4HI | GCNGC | 3 cut(s) | 165, 450, 632 |
| Fsp4HI | GCNGC | 3 cut(s) | 165, 450, 632 |
| FspAI | RTGCGCAY | 1 cut(s) | 564 |
| FspBI | CTAG | 4 cut(s) | 150, 518, 546, 713 |
| FspI | TGCGCA | 1 cut(s) | 564 |
| GlaI | GCGC | 2 cut(s) | 502, 564 |
| GluI | GCNGC | 3 cut(s) | 165, 450, 632 |
| GsaI | CCCAGC | 1 cut(s) | 587 |
| GsuI | CTGGAG | 1 cut(s) | 900 |
| HaeII | RGCGCY | 1 cut(s) | 504 |
| HaeIII | GGCC | 1 cut(s) | 82 |
| HhaI | GCGC | 2 cut(s) | 503, 565 |
| Hin1II | CATG | 5 cut(s) | 109, 296, 448, 569, 939 |
| Hin6I | GCGC | 2 cut(s) | 501, 563 |
| HinP1I | GCGC | 2 cut(s) | 501, 563 |
| HinfI | GANTC | 2 cut(s) | 17, 941 |
| Hpy188I | TCNGA | 4 cut(s) | 22, 55, 189, 910 |
| Hpy188III | TCNNGA | 2 cut(s) | 350, 416 |
| HpyAV | CCTTC | 5 cut(s) | 62, 184, 570, 856, 878 |
| HpyCH4III | ACNGT | 6 cut(s) | 120, 260, 335, 364, 595, 852 |
| HpyCH4V | TGCA | 9 cut(s) | 126, 278, 289, 460, 553, 696, 737, 806, 935 |
| HpyF3I | CTNAG | 6 cut(s) | 158, 453, 465, 495, 572, 661 |
| Hsp92II | CATG | 5 cut(s) | 109, 296, 448, 569, 939 |
| HspAI | GCGC | 2 cut(s) | 501, 563 |
| KflI | GGGWCCC | 1 cut(s) | 580 |
| KpnI | GGTACC | 1 cut(s) | 322 |
| Ksp22I | TGATCA | 1 cut(s) | 966 |
| Kzo9I | GATC | 3 cut(s) | 153, 865, 966 |
| LmnI | GCTCC | 1 cut(s) | 665 |
| LpnPI | CCDG | 8 cut(s) | 21, 96, 335, 429, 475, 597, 864, 945 |
| Lsp1109I | GCAGC | 3 cut(s) | 151, 461, 618 |
| LweI | GCATC | 3 cut(s) | 276, 287, 763 |
| MaeI | CTAG | 4 cut(s) | 150, 518, 546, 713 |
| MaeIII | GTNAC | 2 cut(s) | 31, 260 |
| MalI | GATC | 3 cut(s) | 155, 867, 968 |
| MboI | GATC | 3 cut(s) | 153, 865, 966 |
| MboII | GAAGA | 3 cut(s) | 121, 308, 685 |
| MflI | RGATCY | 2 cut(s) | 153, 865 |
| MlsI | TGGCCA | 1 cut(s) | 82 |
| MluCI | AATT | 4 cut(s) | 49, 86, 183, 636 |
| MluNI | TGGCCA | 1 cut(s) | 82 |
| MmeI | TCCRAC | 3 cut(s) | 815, 837, 933 |
| MnlI | CCTC | 6 cut(s) | 22, 228, 448, 737, 964, 968 |
| Mox20I | TGGCCA | 1 cut(s) | 82 |
| Mph1103I | ATGCAT | 1 cut(s) | 280 |
| MroXI | GAANNNNTTC | 1 cut(s) | 345 |
| MscI | TGGCCA | 1 cut(s) | 82 |
| MseI | TTAA | 5 cut(s) | 47, 411, 642, 684, 870 |
| Msp20I | TGGCCA | 1 cut(s) | 82 |
| MspA1I | CMGCKG | 1 cut(s) | 452 |
| NcoI | CCATGG | 1 cut(s) | 444 |
| NdeI | CATATG | 1 cut(s) | 739 |
| NdeII | GATC | 3 cut(s) | 153, 865, 966 |
| NlaIII | CATG | 5 cut(s) | 109, 296, 448, 569, 939 |
| NlaIV | GGNNCC | 5 cut(s) | 155, 201, 320, 581, 582 |
| NsbI | TGCGCA | 1 cut(s) | 564 |
| NsiI | ATGCAT | 1 cut(s) | 280 |
| NspI | RCATGY | 1 cut(s) | 939 |
| PdmI | GAANNNNTTC | 1 cut(s) | 345 |
| PfeI | GAWTC | 2 cut(s) | 17, 941 |
| PkrI | GCNGC | 3 cut(s) | 166, 451, 633 |
| PpuMI | RGGWCCY | 1 cut(s) | 580 |
| Psp5II | RGGWCCY | 1 cut(s) | 580 |
| PspFI | CCCAGC | 1 cut(s) | 583 |
| PspN4I | GGNNCC | 5 cut(s) | 155, 201, 320, 581, 582 |
| PspPI | GGNCC | 1 cut(s) | 580 |
| PspPPI | RGGWCCY | 1 cut(s) | 580 |
| PsuI | RGATCY | 2 cut(s) | 153, 865 |
| PvuII | CAGCTG | 1 cut(s) | 452 |
| RsaI | GTAC | 1 cut(s) | 320 |
| RsaNI | GTAC | 1 cut(s) | 319 |
| SaqAI | TTAA | 5 cut(s) | 47, 411, 642, 684, 870 |
| SatI | GCNGC | 3 cut(s) | 165, 450, 632 |
| Sau3AI | GATC | 3 cut(s) | 153, 865, 966 |
| Sau96I | GGNCC | 1 cut(s) | 580 |
| SfaNI | GCATC | 3 cut(s) | 276, 287, 763 |
| SinI | GGWCC | 1 cut(s) | 580 |
| SmlI | CTYRAG | 1 cut(s) | 350 |
| SmoI | CTYRAG | 1 cut(s) | 350 |
| Sse9I | AATT | 4 cut(s) | 49, 86, 183, 636 |
| SspMI | CTAG | 4 cut(s) | 150, 518, 546, 713 |
| StyI | CCWWGG | 2 cut(s) | 149, 444 |
| TaaI | ACNGT | 6 cut(s) | 120, 260, 335, 364, 595, 852 |
| TaqI | TCGA | 1 cut(s) | 944 |
| TasI | AATT | 4 cut(s) | 49, 86, 183, 636 |
| TfiI | GAWTC | 2 cut(s) | 17, 941 |
| Tru1I | TTAA | 5 cut(s) | 47, 411, 642, 684, 870 |
| Tru9I | TTAA | 5 cut(s) | 47, 411, 642, 684, 870 |
| TscAI | CASTG | 2 cut(s) | 598, 883 |
| TseI | GCWGC | 3 cut(s) | 164, 449, 631 |
| TspDTI | ATGAA | 5 cut(s) | 122, 230, 309, 452, 892 |
| TspRI | CASTG | 2 cut(s) | 598, 883 |
| VpaK11BI | GGWCC | 1 cut(s) | 580 |
| XapI | RAATTY | 2 cut(s) | 49, 86 |
| XceI | RCATGY | 1 cut(s) | 939 |
| XmaJI | CCTAGG | 1 cut(s) | 149 |
| XmnI | GAANNNNTTC | 1 cut(s) | 345 |
| XspI | CTAG | 4 cut(s) | 150, 518, 546, 713 |
| Zsp2I | ATGCAT | 1 cut(s) | 280 |