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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 1000, 1072 |
| AclWI | GGATC | 3 cut(s) | 897, 946, 1151 |
| AcsI | RAATTY | 3 cut(s) | 224, 1018, 1576 |
| AfaI | GTAC | 2 cut(s) | 232, 677 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 765, 1433, 1551 |
| AflIII | ACRYGT | 1 cut(s) | 658 |
| AhlI | ACTAGT | 1 cut(s) | 1042 |
| AjnI | CCWGG | 1 cut(s) | 1036 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 128, 160 |
| AluBI | AGCT | 6 cut(s) | 611, 692, 746, 1190, 1202, 1245 |
| AluI | AGCT | 6 cut(s) | 611, 692, 746, 1190, 1202, 1245 |
| Alw21I | GWGCWC | 3 cut(s) | 277, 357, 748 |
| Alw26I | GTCTC | 2 cut(s) | 47, 379 |
| AlwI | GGATC | 3 cut(s) | 897, 946, 1151 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1160 |
| AoxI | GGCC | 5 cut(s) | 504, 1166, 1322, 1439, 1487 |
| ApeKI | GCWGC | 4 cut(s) | 313, 524, 1469, 1538 |
| ApoI | RAATTY | 3 cut(s) | 224, 1018, 1576 |
| AspLEI | GCGC | 2 cut(s) | 1001, 1073 |
| AspS9I | GGNCC | 1 cut(s) | 1322 |
| AsuHPI | GGTGA | 2 cut(s) | 98, 394 |
| BanII | GRGCYC | 1 cut(s) | 748 |
| BbsI | GAAGAC | 2 cut(s) | 761, 1548 |
| Bbv12I | GWGCWC | 3 cut(s) | 277, 357, 748 |
| BbvI | GCAGC | 4 cut(s) | 325, 511, 1456, 1525 |
| BccI | CCATC | 6 cut(s) | 32, 77, 95, 373, 734, 985 |
| BceAI | ACGGC | 1 cut(s) | 1309 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1520, 1554 |
| BciT130I | CCWGG | 1 cut(s) | 1038 |
| BcoDI | GTCTC | 2 cut(s) | 47, 379 |
| BcuI | ACTAGT | 1 cut(s) | 1042 |
| BfaI | CTAG | 6 cut(s) | 608, 1043, 1295, 1367, 1449, 1485 |
| BfmI | CTRYAG | 1 cut(s) | 508 |
| BisI | GCNGC | 4 cut(s) | 314, 525, 1470, 1539 |
| BlsI | GCNGC | 4 cut(s) | 315, 526, 1471, 1540 |
| Bme1390I | CCNGG | 1 cut(s) | 1038 |
| BmgT120I | GGNCC | 1 cut(s) | 1322 |
| BmiI | GGNNCC | 1 cut(s) | 975 |
| BmrFI | CCNGG | 1 cut(s) | 1038 |
| BmsI | GCATC | 8 cut(s) | 178, 787, 844, 992, 1015, 1045, 1126, 1481 |
| BpiI | GAAGAC | 2 cut(s) | 761, 1548 |
| BpuEI | CTTGAG | 2 cut(s) | 611, 1501 |
| BsaJI | CCNNGG | 4 cut(s) | 211, 501, 907, 1427 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 765, 1433, 1551 |
| Bse3DI | GCAATG | 4 cut(s) | 316, 837, 1085, 1113 |
| BseBI | CCWGG | 1 cut(s) | 1038 |
| BseDI | CCNNGG | 4 cut(s) | 211, 501, 907, 1427 |
| BseGI | GGATG | 6 cut(s) | 88, 193, 421, 859, 1060, 1141 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 765, 1433, 1551 |
| BseMI | GCAATG | 4 cut(s) | 316, 837, 1085, 1113 |
| BseRI | GAGGAG | 1 cut(s) | 1127 |
| BseXI | GCAGC | 4 cut(s) | 325, 511, 1456, 1525 |
| BseYI | CCCAGC | 2 cut(s) | 571, 713 |
| BshFI | GGCC | 5 cut(s) | 506, 1168, 1324, 1441, 1489 |
| BsiHKAI | GWGCWC | 3 cut(s) | 277, 357, 748 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 765, 1433, 1551 |
| BsmAI | GTCTC | 2 cut(s) | 47, 379 |
| BsmBI | CGTCTC | 1 cut(s) | 379 |
| BsnI | GGCC | 5 cut(s) | 506, 1168, 1324, 1441, 1489 |
| Bsp1286I | GDGCHC | 3 cut(s) | 277, 357, 748 |
| Bsp1407I | TGTACA | 1 cut(s) | 675 |
| Bsp143I | GATC | 8 cut(s) | 333, 604, 622, 722, 889, 951, 1156, 1302 |
| Bsp19I | CCATGG | 2 cut(s) | 501, 907 |
| BspANI | GGCC | 5 cut(s) | 506, 1168, 1324, 1441, 1489 |
| BspHI | TCATGA | 1 cut(s) | 1047 |
| BspLI | GGNNCC | 1 cut(s) | 975 |
| BspPI | GGATC | 3 cut(s) | 897, 946, 1151 |
| BsrDI | GCAATG | 4 cut(s) | 316, 837, 1085, 1113 |
| BsrGI | TGTACA | 1 cut(s) | 675 |
| BssECI | CCNNGG | 4 cut(s) | 211, 501, 907, 1427 |
| BssMI | GATC | 8 cut(s) | 333, 604, 622, 722, 889, 951, 1156, 1302 |
| BssT1I | CCWWGG | 4 cut(s) | 211, 501, 907, 1427 |
| Bst2UI | CCWGG | 1 cut(s) | 1038 |
| Bst4CI | ACNGT | 5 cut(s) | 172, 235, 284, 366, 879 |
| Bst6I | CTCTTC | 2 cut(s) | 45, 1293 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1478 |
| BstAUI | TGTACA | 1 cut(s) | 675 |
| BstDEI | CTNAG | 4 cut(s) | 516, 736, 1026, 1275 |
| BstDSI | CCRYGG | 2 cut(s) | 501, 907 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 763, 1549 |
| BstF5I | GGATG | 6 cut(s) | 88, 193, 421, 859, 1060, 1141 |
| BstHHI | GCGC | 2 cut(s) | 1001, 1073 |
| BstKTI | GATC | 8 cut(s) | 336, 607, 625, 725, 892, 954, 1159, 1305 |
| BstMAI | GTCTC | 2 cut(s) | 47, 379 |
| BstMBI | GATC | 8 cut(s) | 333, 604, 622, 722, 889, 951, 1156, 1302 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1469, 1478 |
| BstNI | CCWGG | 1 cut(s) | 1038 |
| BstNSI | RCATGY | 2 cut(s) | 662, 1222 |
| BstSCI | CCNGG | 1 cut(s) | 1036 |
| BstSFI | CTRYAG | 1 cut(s) | 508 |
| BstV1I | GCAGC | 4 cut(s) | 325, 511, 1456, 1525 |
| BstV2I | GAAGAC | 2 cut(s) | 761, 1548 |
| BstX2I | RGATCY | 2 cut(s) | 889, 1156 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 914, 1179 |
| BstYI | RGATCY | 2 cut(s) | 889, 1156 |
| BsuRI | GGCC | 5 cut(s) | 506, 1168, 1324, 1441, 1489 |
| BtgI | CCRYGG | 2 cut(s) | 501, 907 |
| BtsCI | GGATG | 6 cut(s) | 88, 193, 421, 859, 1060, 1141 |
| BtsIMutI | CAGTG | 1 cut(s) | 725 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1160 |
| CciI | TCATGA | 1 cut(s) | 1047 |
| CfoI | GCGC | 2 cut(s) | 1001, 1073 |
| Cfr13I | GGNCC | 1 cut(s) | 1322 |
| Csp6I | GTAC | 2 cut(s) | 231, 676 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 200, 235 |
| CviAII | CATG | 9 cut(s) | 157, 502, 659, 813, 858, 908, 1048, 1060, 1219 |
| CviQI | GTAC | 2 cut(s) | 231, 676 |
| DdeI | CTNAG | 4 cut(s) | 516, 736, 1026, 1275 |
| DpnI | GATC | 8 cut(s) | 335, 606, 624, 724, 891, 953, 1158, 1304 |
| DpnII | GATC | 8 cut(s) | 333, 604, 622, 722, 889, 951, 1156, 1302 |
| Eam1104I | CTCTTC | 2 cut(s) | 45, 1293 |
| EarI | CTCTTC | 2 cut(s) | 45, 1293 |
| Ecl136II | GAGCTC | 1 cut(s) | 746 |
| Eco130I | CCWWGG | 4 cut(s) | 211, 501, 907, 1427 |
| Eco24I | GRGCYC | 1 cut(s) | 748 |
| Eco53kI | GAGCTC | 1 cut(s) | 746 |
| EcoICRI | GAGCTC | 1 cut(s) | 746 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 763, 1549 |
| EcoRI | GAATTC | 1 cut(s) | 1576 |
| EcoRII | CCWGG | 1 cut(s) | 1036 |
| EcoT14I | CCWWGG | 4 cut(s) | 211, 501, 907, 1427 |
| EcoT22I | ATGCAT | 1 cut(s) | 859 |
| EcoT38I | GRGCYC | 1 cut(s) | 748 |
| ErhI | CCWWGG | 4 cut(s) | 211, 501, 907, 1427 |
| Esp3I | CGTCTC | 1 cut(s) | 379 |
| FaeI | CATG | 9 cut(s) | 160, 505, 662, 816, 861, 911, 1051, 1063, 1222 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 134, 166, 620, 652 |
| FatI | CATG | 9 cut(s) | 156, 501, 658, 812, 857, 907, 1047, 1059, 1218 |
| FauNDI | CATATG | 3 cut(s) | 266, 680, 826 |
| Fnu4HI | GCNGC | 4 cut(s) | 314, 525, 1470, 1539 |
| FokI | GGATG | 6 cut(s) | 95, 200, 428, 866, 1067, 1148 |
| FriOI | GRGCYC | 1 cut(s) | 748 |
| Fsp4HI | GCNGC | 4 cut(s) | 314, 525, 1470, 1539 |
| FspBI | CTAG | 6 cut(s) | 608, 1043, 1295, 1367, 1449, 1485 |
| FspI | TGCGCA | 2 cut(s) | 1000, 1072 |
| GlaI | GCGC | 2 cut(s) | 1000, 1072 |
| GluI | GCNGC | 4 cut(s) | 314, 525, 1470, 1539 |
| GsaI | CCCAGC | 2 cut(s) | 575, 717 |
| HaeIII | GGCC | 5 cut(s) | 506, 1168, 1324, 1441, 1489 |
| HhaI | GCGC | 2 cut(s) | 1001, 1073 |
| Hin1II | CATG | 9 cut(s) | 160, 505, 662, 816, 861, 911, 1051, 1063, 1222 |
| Hin6I | GCGC | 2 cut(s) | 999, 1071 |
| HinP1I | GCGC | 2 cut(s) | 999, 1071 |
| HincII | GTYRAC | 1 cut(s) | 1329 |
| HindII | GTYRAC | 1 cut(s) | 1329 |
| HinfI | GANTC | 4 cut(s) | 261, 430, 705, 1330 |
| HphI | GGTGA | 2 cut(s) | 98, 394 |
| Hpy166II | GTNNAC | 3 cut(s) | 204, 1014, 1329 |
| Hpy188I | TCNGA | 4 cut(s) | 46, 649, 1199, 1307 |
| Hpy188III | TCNNGA | 5 cut(s) | 331, 337, 350, 1048, 1160 |
| Hpy8I | GTNNAC | 3 cut(s) | 204, 1014, 1329 |
| HpyAV | CCTTC | 7 cut(s) | 70, 127, 536, 1045, 1114, 1345, 1431 |
| HpyCH4III | ACNGT | 5 cut(s) | 172, 235, 284, 366, 879 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1469, 1478 |
| HpyF3I | CTNAG | 4 cut(s) | 516, 736, 1026, 1275 |
| Hsp92II | CATG | 9 cut(s) | 160, 505, 662, 816, 861, 911, 1051, 1063, 1222 |
| HspAI | GCGC | 2 cut(s) | 999, 1071 |
| Kzo9I | GATC | 8 cut(s) | 333, 604, 622, 722, 889, 951, 1156, 1302 |
| LmnI | GCTCC | 4 cut(s) | 556, 689, 743, 1510 |
| Lsp1109I | GCAGC | 4 cut(s) | 325, 511, 1456, 1525 |
| LweI | GCATC | 8 cut(s) | 178, 787, 844, 992, 1015, 1045, 1126, 1481 |
| MaeI | CTAG | 6 cut(s) | 608, 1043, 1295, 1367, 1449, 1485 |
| MaeIII | GTNAC | 4 cut(s) | 242, 632, 654, 1214 |
| MalI | GATC | 8 cut(s) | 335, 606, 624, 724, 891, 953, 1158, 1304 |
| MboI | GATC | 8 cut(s) | 333, 604, 622, 722, 889, 951, 1156, 1302 |
| MboII | GAAGA | 9 cut(s) | 17, 23, 32, 62, 766, 1310, 1360, 1370, 1548 |
| MflI | RGATCY | 2 cut(s) | 889, 1156 |
| MhlI | GDGCHC | 3 cut(s) | 277, 357, 748 |
| MluCI | AATT | 8 cut(s) | 89, 224, 643, 773, 792, 1018, 1340, 1576 |
| MlyI | GAGTC | 2 cut(s) | 270, 1324 |
| MmeI | TCCRAC | 4 cut(s) | 348, 513, 769, 822 |
| Mph1103I | ATGCAT | 1 cut(s) | 859 |
| MseI | TTAA | 9 cut(s) | 114, 141, 182, 237, 779, 963, 1128, 1227, 1343 |
| MslI | CAYNNNNRTG | 3 cut(s) | 906, 912, 1095 |
| MspR9I | CCNGG | 1 cut(s) | 1038 |
| MvaI | CCWGG | 1 cut(s) | 1038 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1469, 1478 |
| NcoI | CCATGG | 2 cut(s) | 501, 907 |
| NdeI | CATATG | 3 cut(s) | 266, 680, 826 |
| NdeII | GATC | 8 cut(s) | 333, 604, 622, 722, 889, 951, 1156, 1302 |
| NlaIII | CATG | 9 cut(s) | 160, 505, 662, 816, 861, 911, 1051, 1063, 1222 |
| NlaIV | GGNNCC | 1 cut(s) | 975 |
| NmuCI | GTSAC | 4 cut(s) | 242, 632, 654, 1214 |
| NsbI | TGCGCA | 2 cut(s) | 1000, 1072 |
| NsiI | ATGCAT | 1 cut(s) | 859 |
| NspI | RCATGY | 2 cut(s) | 662, 1222 |
| PagI | TCATGA | 1 cut(s) | 1047 |
| PciI | ACATGT | 1 cut(s) | 658 |
| PfeI | GAWTC | 2 cut(s) | 430, 705 |
| PflFI | GACNNNGTC | 1 cut(s) | 1552 |
| PfoI | TCCNGGA | 1 cut(s) | 1036 |
| PkrI | GCNGC | 4 cut(s) | 315, 526, 1471, 1540 |
| PleI | GAGTC | 2 cut(s) | 269, 1324 |
| PpsI | GAGTC | 2 cut(s) | 269, 1324 |
| PscI | ACATGT | 1 cut(s) | 658 |
| Psp124BI | GAGCTC | 1 cut(s) | 748 |
| Psp6I | CCWGG | 1 cut(s) | 1036 |
| PspFI | CCCAGC | 2 cut(s) | 571, 713 |
| PspGI | CCWGG | 1 cut(s) | 1036 |
| PspN4I | GGNNCC | 1 cut(s) | 975 |
| PspPI | GGNCC | 1 cut(s) | 1322 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1160 |
| PsuI | RGATCY | 2 cut(s) | 889, 1156 |
| PsyI | GACNNNGTC | 1 cut(s) | 1552 |
| RsaI | GTAC | 2 cut(s) | 232, 677 |
| RsaNI | GTAC | 2 cut(s) | 231, 676 |
| RseI | CAYNNNNRTG | 3 cut(s) | 906, 912, 1095 |
| SacI | GAGCTC | 1 cut(s) | 748 |
| SaqAI | TTAA | 9 cut(s) | 114, 141, 182, 237, 779, 963, 1128, 1227, 1343 |
| SatI | GCNGC | 4 cut(s) | 314, 525, 1470, 1539 |
| Sau3AI | GATC | 8 cut(s) | 333, 604, 622, 722, 889, 951, 1156, 1302 |
| Sau96I | GGNCC | 1 cut(s) | 1322 |
| SchI | GAGTC | 2 cut(s) | 270, 1324 |
| ScrFI | CCNGG | 1 cut(s) | 1038 |
| SduI | GDGCHC | 3 cut(s) | 277, 357, 748 |
| SfaNI | GCATC | 8 cut(s) | 178, 787, 844, 992, 1015, 1045, 1126, 1481 |
| SfcI | CTRYAG | 1 cut(s) | 508 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 906, 912, 1095 |
| SmlI | CTYRAG | 2 cut(s) | 626, 1516 |
| SmoI | CTYRAG | 2 cut(s) | 626, 1516 |
| SpeI | ACTAGT | 1 cut(s) | 1042 |
| Sse9I | AATT | 8 cut(s) | 89, 224, 643, 773, 792, 1018, 1340, 1576 |
| SspMI | CTAG | 6 cut(s) | 608, 1043, 1295, 1367, 1449, 1485 |
| SstI | GAGCTC | 1 cut(s) | 748 |
| StyD4I | CCNGG | 1 cut(s) | 1036 |
| StyI | CCWWGG | 4 cut(s) | 211, 501, 907, 1427 |
| TaaI | ACNGT | 5 cut(s) | 172, 235, 284, 366, 879 |
| TaqI | TCGA | 2 cut(s) | 174, 1547 |
| TasI | AATT | 8 cut(s) | 89, 224, 643, 773, 792, 1018, 1340, 1576 |
| TatI | WGTACW | 1 cut(s) | 675 |
| TfiI | GAWTC | 2 cut(s) | 430, 705 |
| Tru1I | TTAA | 9 cut(s) | 114, 141, 182, 237, 779, 963, 1128, 1227, 1343 |
| Tru9I | TTAA | 9 cut(s) | 114, 141, 182, 237, 779, 963, 1128, 1227, 1343 |
| TscAI | CASTG | 1 cut(s) | 732 |
| TseFI | GTSAC | 4 cut(s) | 242, 632, 654, 1214 |
| TseI | GCWGC | 4 cut(s) | 313, 524, 1469, 1538 |
| Tsp45I | GTSAC | 4 cut(s) | 242, 632, 654, 1214 |
| TspRI | CASTG | 1 cut(s) | 732 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1552 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 763, 1549 |
| XapI | RAATTY | 3 cut(s) | 224, 1018, 1576 |
| XceI | RCATGY | 2 cut(s) | 662, 1222 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1176 |
| XspI | CTAG | 6 cut(s) | 608, 1043, 1295, 1367, 1449, 1485 |
| Zsp2I | ATGCAT | 1 cut(s) | 859 |