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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 49 |
| Acc36I | ACCTGC | 1 cut(s) | 49 |
| AfaI | GTAC | 1 cut(s) | 370 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 26, 435 |
| AjnI | CCWGG | 1 cut(s) | 19 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 202, 234 |
| AluBI | AGCT | 3 cut(s) | 168, 290, 323 |
| AluI | AGCT | 3 cut(s) | 168, 290, 323 |
| ApeKI | GCWGC | 3 cut(s) | 196, 388, 391 |
| AspA2I | CCTAGG | 1 cut(s) | 230 |
| AspS9I | GGNCC | 1 cut(s) | 227 |
| AsuHPI | GGTGA | 1 cut(s) | 170 |
| AvaII | GGWCC | 1 cut(s) | 227 |
| AvrII | CCTAGG | 1 cut(s) | 230 |
| BbvI | GCAGC | 3 cut(s) | 208, 400, 403 |
| BciT130I | CCWGG | 1 cut(s) | 21 |
| BfaI | CTAG | 3 cut(s) | 66, 231, 309 |
| BfuAI | ACCTGC | 1 cut(s) | 49 |
| BisI | GCNGC | 3 cut(s) | 197, 389, 392 |
| BlnI | CCTAGG | 1 cut(s) | 230 |
| BlsI | GCNGC | 3 cut(s) | 198, 390, 393 |
| Bme1390I | CCNGG | 1 cut(s) | 21 |
| Bme18I | GGWCC | 1 cut(s) | 227 |
| BmgT120I | GGNCC | 1 cut(s) | 227 |
| BmrFI | CCNGG | 1 cut(s) | 21 |
| BmsI | GCATC | 2 cut(s) | 40, 352 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 347, 379 |
| BpmI | CTGGAG | 1 cut(s) | 42 |
| BsaJI | CCNNGG | 1 cut(s) | 230 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 202, 232 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 26, 435 |
| BseBI | CCWGG | 1 cut(s) | 21 |
| BseDI | CCNNGG | 1 cut(s) | 230 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 26, 435 |
| BseMII | CTCAG | 1 cut(s) | 444 |
| BseXI | GCAGC | 3 cut(s) | 208, 400, 403 |
| BseYI | CCCAGC | 1 cut(s) | 290 |
| BsgI | GTGCAG | 1 cut(s) | 407 |
| BslFI | GGGAC | 1 cut(s) | 129 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 26, 435 |
| BsmFI | GGGAC | 1 cut(s) | 129 |
| Bsp1407I | TGTACA | 1 cut(s) | 368 |
| BspCNI | CTCAG | 1 cut(s) | 443 |
| BspMI | ACCTGC | 1 cut(s) | 49 |
| BsrGI | TGTACA | 1 cut(s) | 368 |
| BssECI | CCNNGG | 1 cut(s) | 230 |
| BssT1I | CCWWGG | 1 cut(s) | 230 |
| Bst2UI | CCWGG | 1 cut(s) | 21 |
| Bst6I | CTCTTC | 1 cut(s) | 272 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 41 |
| BstAUI | TGTACA | 1 cut(s) | 368 |
| BstC8I | GCNNGC | 3 cut(s) | 55, 201, 442 |
| BstDEI | CTNAG | 2 cut(s) | 171, 430 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 41, 50, 174 |
| BstNI | CCWGG | 1 cut(s) | 21 |
| BstSCI | CCNGG | 1 cut(s) | 19 |
| BstV1I | GCAGC | 3 cut(s) | 208, 400, 403 |
| BveI | ACCTGC | 1 cut(s) | 49 |
| Cac8I | GCNNGC | 3 cut(s) | 55, 201, 442 |
| Cfr13I | GGNCC | 1 cut(s) | 227 |
| Csp6I | GTAC | 1 cut(s) | 369 |
| CviAII | CATG | 1 cut(s) | 270 |
| CviJI | RGCY | 4 cut(s) | 168, 290, 323, 394 |
| CviKI_1 | RGCY | 4 cut(s) | 168, 290, 323, 394 |
| CviQI | GTAC | 1 cut(s) | 369 |
| DdeI | CTNAG | 2 cut(s) | 171, 430 |
| Eam1104I | CTCTTC | 1 cut(s) | 272 |
| EarI | CTCTTC | 1 cut(s) | 272 |
| Eco130I | CCWWGG | 1 cut(s) | 230 |
| Eco47I | GGWCC | 1 cut(s) | 227 |
| EcoO109I | RGGNCCY | 1 cut(s) | 227 |
| EcoRII | CCWGG | 1 cut(s) | 19 |
| EcoT14I | CCWWGG | 1 cut(s) | 230 |
| ErhI | CCWWGG | 1 cut(s) | 230 |
| FaeI | CATG | 1 cut(s) | 273 |
| FaiI | YATR | 6 cut(s) | 78, 98, 103, 271, 410, 417 |
| FaqI | GGGAC | 1 cut(s) | 129 |
| FatI | CATG | 1 cut(s) | 269 |
| Fnu4HI | GCNGC | 3 cut(s) | 197, 389, 392 |
| Fsp4HI | GCNGC | 3 cut(s) | 197, 389, 392 |
| FspBI | CTAG | 3 cut(s) | 66, 231, 309 |
| GluI | GCNGC | 3 cut(s) | 197, 389, 392 |
| GsaI | CCCAGC | 1 cut(s) | 294 |
| GsuI | CTGGAG | 1 cut(s) | 42 |
| Hin1II | CATG | 1 cut(s) | 273 |
| HincII | GTYRAC | 1 cut(s) | 306 |
| HindII | GTYRAC | 1 cut(s) | 306 |
| HindIII | AAGCTT | 1 cut(s) | 321 |
| HinfI | GANTC | 2 cut(s) | 9, 148 |
| HphI | GGTGA | 1 cut(s) | 170 |
| Hpy166II | GTNNAC | 2 cut(s) | 306, 401 |
| Hpy188I | TCNGA | 1 cut(s) | 433 |
| Hpy188III | TCNNGA | 1 cut(s) | 66 |
| Hpy8I | GTNNAC | 2 cut(s) | 306, 401 |
| HpyAV | CCTTC | 2 cut(s) | 106, 155 |
| HpyCH4IV | ACGT | 1 cut(s) | 425 |
| HpyCH4V | TGCA | 2 cut(s) | 53, 388 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 41, 50, 174 |
| HpyF3I | CTNAG | 2 cut(s) | 171, 430 |
| HpySE526I | ACGT | 1 cut(s) | 425 |
| Hsp92II | CATG | 1 cut(s) | 273 |
| LmnI | GCTCC | 2 cut(s) | 223, 412 |
| LpnPI | CCDG | 7 cut(s) | 6, 33, 54, 60, 141, 185, 276 |
| Lsp1109I | GCAGC | 3 cut(s) | 208, 400, 403 |
| LweI | GCATC | 2 cut(s) | 40, 352 |
| MaeI | CTAG | 3 cut(s) | 66, 231, 309 |
| MaeII | ACGT | 1 cut(s) | 425 |
| MboII | GAAGA | 4 cut(s) | 16, 286, 289, 321 |
| MluCI | AATT | 2 cut(s) | 249, 404 |
| MnlI | CCTC | 6 cut(s) | 19, 122, 258, 273, 373, 439 |
| MseI | TTAA | 1 cut(s) | 144 |
| MspR9I | CCNGG | 1 cut(s) | 21 |
| MvaI | CCWGG | 1 cut(s) | 21 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 41, 50, 174 |
| NlaIII | CATG | 1 cut(s) | 273 |
| PaqCI | CACCTGC | 1 cut(s) | 49 |
| PfeI | GAWTC | 2 cut(s) | 9, 148 |
| PkrI | GCNGC | 3 cut(s) | 198, 390, 393 |
| PpuMI | RGGWCCY | 1 cut(s) | 227 |
| Psp5II | RGGWCCY | 1 cut(s) | 227 |
| Psp6I | CCWGG | 1 cut(s) | 19 |
| PspFI | CCCAGC | 1 cut(s) | 290 |
| PspGI | CCWGG | 1 cut(s) | 19 |
| PspPI | GGNCC | 1 cut(s) | 227 |
| PspPPI | RGGWCCY | 1 cut(s) | 227 |
| RsaI | GTAC | 1 cut(s) | 370 |
| RsaNI | GTAC | 1 cut(s) | 369 |
| SaqAI | TTAA | 1 cut(s) | 144 |
| SatI | GCNGC | 3 cut(s) | 197, 389, 392 |
| Sau96I | GGNCC | 1 cut(s) | 227 |
| ScrFI | CCNGG | 1 cut(s) | 21 |
| SetI | ASST | 9 cut(s) | 22, 43, 75, 133, 170, 232, 292, 325, 428 |
| SfaNI | GCATC | 2 cut(s) | 40, 352 |
| SinI | GGWCC | 1 cut(s) | 227 |
| Sse9I | AATT | 2 cut(s) | 249, 404 |
| SspMI | CTAG | 3 cut(s) | 66, 231, 309 |
| StyD4I | CCNGG | 1 cut(s) | 19 |
| StyI | CCWWGG | 1 cut(s) | 230 |
| TaiI | ACGT | 1 cut(s) | 428 |
| TaqI | TCGA | 1 cut(s) | 346 |
| TasI | AATT | 2 cut(s) | 249, 404 |
| TatI | WGTACW | 1 cut(s) | 368 |
| TfiI | GAWTC | 2 cut(s) | 9, 148 |
| Tru1I | TTAA | 1 cut(s) | 144 |
| Tru9I | TTAA | 1 cut(s) | 144 |
| TseI | GCWGC | 3 cut(s) | 196, 388, 391 |
| TspDTI | ATGAA | 2 cut(s) | 17, 315 |
| VpaK11BI | GGWCC | 1 cut(s) | 227 |
| XbaI | TCTAGA | 1 cut(s) | 65 |
| XmaJI | CCTAGG | 1 cut(s) | 230 |
| XspI | CTAG | 3 cut(s) | 66, 231, 309 |