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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1216 |
| Acc36I | ACCTGC | 4 cut(s) | 1216, 1276, 3049, 3586 |
| AccB1I | GGYRCC | 2 cut(s) | 686, 3433 |
| AciI | CCGC | 1 cut(s) | 1299 |
| AclWI | GGATC | 2 cut(s) | 237, 1498 |
| AcsI | RAATTY | 4 cut(s) | 209, 628, 1124, 1139 |
| AcuI | CTGAAG | 5 cut(s) | 435, 906, 1032, 1811, 2626 |
| AdeI | CACNNNGTG | 1 cut(s) | 737 |
| AfaI | GTAC | 9 cut(s) | 71, 121, 907, 1173, 1204, 1872, 2024, 2333, 2965 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 448, 1569, 2186, 2495, 3116 |
| AflII | CTTAAG | 1 cut(s) | 2947 |
| AflIII | ACRYGT | 1 cut(s) | 1384 |
| AhlI | ACTAGT | 1 cut(s) | 922 |
| AjnI | CCWGG | 7 cut(s) | 802, 1562, 2068, 2221, 2428, 2488, 3211 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1110, 1142, 1663, 1695, 1928, 1960 |
| AleI | CACNNNNGTG | 5 cut(s) | 90, 846, 1784, 2540, 2886 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 909, 941, 2883, 2915 |
| Alw26I | GTCTC | 2 cut(s) | 1172, 2640 |
| AlwI | GGATC | 2 cut(s) | 237, 1498 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3041 |
| ApoI | RAATTY | 4 cut(s) | 209, 628, 1124, 1139 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2436, 2468 |
| AspA2I | CCTAGG | 1 cut(s) | 2822 |
| AspS9I | GGNCC | 8 cut(s) | 971, 1269, 1772, 2581, 2758, 2819, 2859, 3549 |
| AvaII | GGWCC | 5 cut(s) | 971, 1772, 2581, 2758, 2859 |
| AvrII | CCTAGG | 1 cut(s) | 2822 |
| BanI | GGYRCC | 2 cut(s) | 686, 3433 |
| BanII | GRGCYC | 1 cut(s) | 3400 |
| BauI | CACGAG | 2 cut(s) | 846, 2536 |
| BbsI | GAAGAC | 4 cut(s) | 69, 894, 1425, 3521 |
| BbvCI | CCTCAGC | 2 cut(s) | 758, 966 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 267, 301 |
| BciT130I | CCWGG | 7 cut(s) | 804, 1564, 2070, 2223, 2430, 2490, 3213 |
| BciVI | GTATCC | 1 cut(s) | 3156 |
| BclI | TGATCA | 3 cut(s) | 336, 1788, 1807 |
| BcoDI | GTCTC | 2 cut(s) | 1172, 2640 |
| BcuI | ACTAGT | 1 cut(s) | 922 |
| BfmI | CTRYAG | 6 cut(s) | 51, 897, 2274, 2327, 2570, 3603 |
| BfrI | CTTAAG | 1 cut(s) | 2947 |
| BfuAI | ACCTGC | 4 cut(s) | 1216, 1276, 3049, 3586 |
| BfuI | GTATCC | 1 cut(s) | 3156 |
| BglII | AGATCT | 3 cut(s) | 1579, 1802, 1879 |
| BlnI | CCTAGG | 1 cut(s) | 2822 |
| BmcAI | AGTACT | 1 cut(s) | 2333 |
| Bme1390I | CCNGG | 7 cut(s) | 804, 1564, 2070, 2223, 2430, 2490, 3213 |
| Bme18I | GGWCC | 5 cut(s) | 971, 1772, 2581, 2758, 2859 |
| BmgT120I | GGNCC | 8 cut(s) | 971, 1269, 1772, 2581, 2758, 2819, 2859, 3549 |
| BmiI | GGNNCC | 9 cut(s) | 688, 972, 1242, 1270, 2954, 3210, 3397, 3435, 3550 |
| BmrFI | CCNGG | 7 cut(s) | 804, 1564, 2070, 2223, 2430, 2490, 3213 |
| BpiI | GAAGAC | 4 cut(s) | 69, 894, 1425, 3521 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2846, 2878 |
| Bpu10I | CCTNAGC | 3 cut(s) | 758, 966, 2401 |
| BpuEI | CTTGAG | 3 cut(s) | 338, 448, 1167 |
| Bsa29I | ATCGAT | 1 cut(s) | 2250 |
| BsaWI | WCCGGW | 1 cut(s) | 2909 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 543, 555, 573, 585, 909, 939, 1232, 1262 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 448, 1569, 2186, 2495, 3116 |
| Bse1I | ACTGG | 2 cut(s) | 388, 2812 |
| Bse3DI | GCAATG | 2 cut(s) | 295, 3573 |
| BseBI | CCWGG | 7 cut(s) | 804, 1564, 2070, 2223, 2430, 2490, 3213 |
| BseCI | ATCGAT | 1 cut(s) | 2250 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 448, 1569, 2186, 2495, 3116 |
| BseMI | GCAATG | 2 cut(s) | 295, 3573 |
| BseMII | CTCAG | 9 cut(s) | 611, 749, 957, 1167, 1323, 1385, 1638, 2085, 3599 |
| BseNI | ACTGG | 2 cut(s) | 388, 2812 |
| BseRI | GAGGAG | 4 cut(s) | 409, 412, 1484, 2074 |
| BsgI | GTGCAG | 5 cut(s) | 597, 689, 1979, 2259, 3027 |
| BshNI | GGYRCC | 2 cut(s) | 686, 3433 |
| BshVI | ATCGAT | 1 cut(s) | 2250 |
| BsiSI | CCGG | 2 cut(s) | 113, 2910 |
| BslFI | GGGAC | 2 cut(s) | 984, 3081 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 448, 1569, 2186, 2495, 3116 |
| BsmAI | GTCTC | 2 cut(s) | 1172, 2640 |
| BsmFI | GGGAC | 2 cut(s) | 984, 3081 |
| BsmI | GAATGC | 1 cut(s) | 1445 |
| Bsp1286I | GDGCHC | 1 cut(s) | 3400 |
| Bsp1407I | TGTACA | 2 cut(s) | 69, 2963 |
| Bsp19I | CCATGG | 3 cut(s) | 75, 88, 3519 |
| BspACI | CCGC | 1 cut(s) | 1299 |
| BspCNI | CTCAG | 9 cut(s) | 610, 750, 958, 1168, 1322, 1384, 1637, 2086, 3598 |
| BspDI | ATCGAT | 1 cut(s) | 2250 |
| BspLI | GGNNCC | 9 cut(s) | 688, 972, 1242, 1270, 2954, 3210, 3397, 3435, 3550 |
| BspMAI | CTGCAG | 4 cut(s) | 55, 901, 2574, 3607 |
| BspMI | ACCTGC | 4 cut(s) | 1216, 1276, 3049, 3586 |
| BspPI | GGATC | 2 cut(s) | 237, 1498 |
| BspT107I | GGYRCC | 2 cut(s) | 686, 3433 |
| BspTI | CTTAAG | 1 cut(s) | 2947 |
| BsrDI | GCAATG | 2 cut(s) | 295, 3573 |
| BsrGI | TGTACA | 2 cut(s) | 69, 2963 |
| BsrI | ACTGG | 2 cut(s) | 388, 2812 |
| BssSI | CACGAG | 2 cut(s) | 846, 2536 |
| Bst2BI | CACGAG | 2 cut(s) | 846, 2536 |
| Bst2UI | CCWGG | 7 cut(s) | 804, 1564, 2070, 2223, 2430, 2490, 3213 |
| Bst4CI | ACNGT | 9 cut(s) | 644, 860, 955, 1337, 1817, 2080, 2181, 2331, 2885 |
| Bst6I | CTCTTC | 4 cut(s) | 1404, 1461, 3191, 3407 |
| BstAFI | CTTAAG | 1 cut(s) | 2947 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3041 |
| BstAUI | TGTACA | 2 cut(s) | 69, 2963 |
| BstC8I | GCNNGC | 5 cut(s) | 2034, 2149, 2937, 2993, 3432 |
| BstDSI | CCRYGG | 3 cut(s) | 75, 88, 3519 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1567 |
| BstMAI | GTCTC | 2 cut(s) | 1172, 2640 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 941, 1305, 2224, 2506, 3014, 3041, 3356, 3424, 3614 |
| BstNI | CCWGG | 7 cut(s) | 804, 1564, 2070, 2223, 2430, 2490, 3213 |
| BstNSI | RCATGY | 5 cut(s) | 1388, 2269, 2939, 2970, 2995 |
| BstSCI | CCNGG | 7 cut(s) | 802, 1562, 2068, 2221, 2428, 2488, 3211 |
| BstSFI | CTRYAG | 6 cut(s) | 51, 897, 2274, 2327, 2570, 3603 |
| BstV2I | GAAGAC | 4 cut(s) | 69, 894, 1425, 3521 |
| BstX2I | RGATCY | 4 cut(s) | 229, 1579, 1802, 1879 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 92, 1600, 2625 |
| BstYI | RGATCY | 4 cut(s) | 229, 1579, 1802, 1879 |
| Bsu15I | ATCGAT | 1 cut(s) | 2250 |
| BsuI | GTATCC | 1 cut(s) | 3156 |
| BsuTUI | ATCGAT | 1 cut(s) | 2250 |
| BtgI | CCRYGG | 3 cut(s) | 75, 88, 3519 |
| BtsI | GCAGTG | 3 cut(s) | 1450, 2603, 2946 |
| BtsIMutI | CAGTG | 9 cut(s) | 376, 649, 1150, 1342, 1450, 1730, 2603, 2890, 2946 |
| BveI | ACCTGC | 4 cut(s) | 1216, 1276, 3049, 3586 |
| Cac8I | GCNNGC | 5 cut(s) | 2034, 2149, 2937, 2993, 3432 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3041 |
| Cfr13I | GGNCC | 8 cut(s) | 971, 1269, 1772, 2581, 2758, 2819, 2859, 3549 |
| ClaI | ATCGAT | 1 cut(s) | 2250 |
| Csp6I | GTAC | 9 cut(s) | 70, 120, 906, 1172, 1203, 1871, 2023, 2332, 2964 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 139, 174 |
| CviQI | GTAC | 9 cut(s) | 70, 120, 906, 1172, 1203, 1871, 2023, 2332, 2964 |
| DraIII | CACNNNGTG | 1 cut(s) | 737 |
| Eam1104I | CTCTTC | 4 cut(s) | 1404, 1461, 3191, 3407 |
| EarI | CTCTTC | 4 cut(s) | 1404, 1461, 3191, 3407 |
| Eco147I | AGGCCT | 1 cut(s) | 883 |
| Eco24I | GRGCYC | 1 cut(s) | 3400 |
| Eco47I | GGWCC | 5 cut(s) | 971, 1772, 2581, 2758, 2859 |
| Eco57I | CTGAAG | 5 cut(s) | 435, 906, 1032, 1811, 2626 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1567 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2859, 3549 |
| EcoRII | CCWGG | 7 cut(s) | 802, 1562, 2068, 2221, 2428, 2488, 3211 |
| EcoT22I | ATGCAT | 1 cut(s) | 3573 |
| EcoT38I | GRGCYC | 1 cut(s) | 3400 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1458, 1490, 2714, 2746 |
| FaqI | GGGAC | 2 cut(s) | 984, 3081 |
| FauI | CCCGC | 1 cut(s) | 1292 |
| FauNDI | CATATG | 2 cut(s) | 2460, 2559 |
| FbaI | TGATCA | 3 cut(s) | 336, 1788, 1807 |
| FriOI | GRGCYC | 1 cut(s) | 3400 |
| HapII | CCGG | 2 cut(s) | 113, 2910 |
| HincII | GTYRAC | 1 cut(s) | 471 |
| HindII | GTYRAC | 1 cut(s) | 471 |
| HpaII | CCGG | 2 cut(s) | 113, 2910 |
| HpyCH4III | ACNGT | 9 cut(s) | 644, 860, 955, 1337, 1817, 2080, 2181, 2331, 2885 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 941, 1305, 2224, 2506, 3014, 3041, 3356, 3424, 3614 |
| Ksp22I | TGATCA | 3 cut(s) | 336, 1788, 1807 |
| LmnI | GCTCC | 9 cut(s) | 1240, 1471, 2017, 2529, 2628, 2958, 3032, 3244, 3395 |
| MaeIII | GTNAC | 7 cut(s) | 95, 704, 1337, 1835, 2039, 2063, 2688 |
| MfeI | CAATTG | 4 cut(s) | 327, 2576, 2981, 3150 |
| MflI | RGATCY | 4 cut(s) | 229, 1579, 1802, 1879 |
| MhlI | GDGCHC | 1 cut(s) | 3400 |
| MlyI | GAGTC | 3 cut(s) | 1174, 1789, 2696 |
| MmeI | TCCRAC | 3 cut(s) | 2172, 3470, 3482 |
| Mph1103I | ATGCAT | 1 cut(s) | 3573 |
| MslI | CAYNNNNRTG | 9 cut(s) | 90, 846, 1784, 2317, 2540, 2562, 2596, 2886, 3287 |
| MspCI | CTTAAG | 1 cut(s) | 2947 |
| MspI | CCGG | 2 cut(s) | 113, 2910 |
| MspR9I | CCNGG | 7 cut(s) | 804, 1564, 2070, 2223, 2430, 2490, 3213 |
| MunI | CAATTG | 4 cut(s) | 327, 2576, 2981, 3150 |
| Mva1269I | GAATGC | 1 cut(s) | 1445 |
| MvaI | CCWGG | 7 cut(s) | 804, 1564, 2070, 2223, 2430, 2490, 3213 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 941, 1305, 2224, 2506, 3014, 3041, 3356, 3424, 3614 |
| NcoI | CCATGG | 3 cut(s) | 75, 88, 3519 |
| NdeI | CATATG | 2 cut(s) | 2460, 2559 |
| NlaIV | GGNNCC | 9 cut(s) | 688, 972, 1242, 1270, 2954, 3210, 3397, 3435, 3550 |
| NmuCI | GTSAC | 4 cut(s) | 704, 1337, 1835, 2688 |
| NsiI | ATGCAT | 1 cut(s) | 3573 |
| NspI | RCATGY | 5 cut(s) | 1388, 2269, 2939, 2970, 2995 |
| OliI | CACNNNNGTG | 5 cut(s) | 90, 846, 1784, 2540, 2886 |
| PaeI | GCATGC | 2 cut(s) | 2939, 2995 |
| PaqCI | CACCTGC | 1 cut(s) | 1216 |
| PasI | CCCWGGG | 1 cut(s) | 2222 |
| PceI | AGGCCT | 1 cut(s) | 883 |
| PciI | ACATGT | 1 cut(s) | 1384 |
| PctI | GAATGC | 1 cut(s) | 1445 |
| PfoI | TCCNGGA | 2 cut(s) | 1562, 2488 |
| PleI | GAGTC | 3 cut(s) | 1174, 1789, 2695 |
| PpsI | GAGTC | 3 cut(s) | 1174, 1789, 2695 |
| PpuMI | RGGWCCY | 1 cut(s) | 2859 |
| PscI | ACATGT | 1 cut(s) | 1384 |
| Psp5II | RGGWCCY | 1 cut(s) | 2859 |
| Psp6I | CCWGG | 7 cut(s) | 802, 1562, 2068, 2221, 2428, 2488, 3211 |
| PspGI | CCWGG | 7 cut(s) | 802, 1562, 2068, 2221, 2428, 2488, 3211 |
| PspN4I | GGNNCC | 9 cut(s) | 688, 972, 1242, 1270, 2954, 3210, 3397, 3435, 3550 |
| PspPI | GGNCC | 8 cut(s) | 971, 1269, 1772, 2581, 2758, 2819, 2859, 3549 |
| PspPPI | RGGWCCY | 1 cut(s) | 2859 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2056, 2088 |
| PstI | CTGCAG | 4 cut(s) | 55, 901, 2574, 3607 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3041 |
| PsuI | RGATCY | 4 cut(s) | 229, 1579, 1802, 1879 |
| RsaI | GTAC | 9 cut(s) | 71, 121, 907, 1173, 1204, 1872, 2024, 2333, 2965 |
| RsaNI | GTAC | 9 cut(s) | 70, 120, 906, 1172, 1203, 1871, 2023, 2332, 2964 |
| RseI | CAYNNNNRTG | 9 cut(s) | 90, 846, 1784, 2317, 2540, 2562, 2596, 2886, 3287 |
| Sau96I | GGNCC | 8 cut(s) | 971, 1269, 1772, 2581, 2758, 2819, 2859, 3549 |
| ScaI | AGTACT | 1 cut(s) | 2333 |
| SchI | GAGTC | 3 cut(s) | 1174, 1789, 2696 |
| ScrFI | CCNGG | 7 cut(s) | 804, 1564, 2070, 2223, 2430, 2490, 3213 |
| SduI | GDGCHC | 1 cut(s) | 3400 |
| SfcI | CTRYAG | 6 cut(s) | 51, 897, 2274, 2327, 2570, 3603 |
| SinI | GGWCC | 5 cut(s) | 971, 1772, 2581, 2758, 2859 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 90, 846, 1784, 2317, 2540, 2562, 2596, 2886, 3287 |
| SmlI | CTYRAG | 4 cut(s) | 353, 427, 1182, 2947 |
| SmoI | CTYRAG | 4 cut(s) | 353, 427, 1182, 2947 |
| SpeI | ACTAGT | 1 cut(s) | 922 |
| SphI | GCATGC | 2 cut(s) | 2939, 2995 |
| SseBI | AGGCCT | 1 cut(s) | 883 |
| SsiI | CCGC | 1 cut(s) | 1299 |
| StuI | AGGCCT | 1 cut(s) | 883 |
| StyD4I | CCNGG | 7 cut(s) | 802, 1562, 2068, 2221, 2428, 2488, 3211 |
| TaaI | ACNGT | 9 cut(s) | 644, 860, 955, 1337, 1817, 2080, 2181, 2331, 2885 |
| TaqI | TCGA | 3 cut(s) | 277, 2250, 2455 |
| TatI | WGTACW | 6 cut(s) | 69, 905, 1870, 2022, 2331, 2963 |
| TscAI | CASTG | 9 cut(s) | 376, 649, 1150, 1342, 1450, 1730, 2603, 2890, 2946 |
| TseFI | GTSAC | 4 cut(s) | 704, 1337, 1835, 2688 |
| Tsp45I | GTSAC | 4 cut(s) | 704, 1337, 1835, 2688 |
| TspRI | CASTG | 9 cut(s) | 376, 649, 1150, 1342, 1450, 1730, 2603, 2890, 2946 |
| Vha464I | CTTAAG | 1 cut(s) | 2947 |
| VpaK11BI | GGWCC | 5 cut(s) | 971, 1772, 2581, 2758, 2859 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1567 |
| XapI | RAATTY | 4 cut(s) | 209, 628, 1124, 1139 |
| XceI | RCATGY | 5 cut(s) | 1388, 2269, 2939, 2970, 2995 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3539 |
| XmaJI | CCTAGG | 1 cut(s) | 2822 |
| ZrmI | AGTACT | 1 cut(s) | 2333 |
| Zsp2I | ATGCAT | 1 cut(s) | 3573 |