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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1089, 1278 |
| Acc36I | ACCTGC | 1 cut(s) | 910 |
| AccB1I | GGYRCC | 3 cut(s) | 601, 1388, 1421 |
| AccI | GTMKAC | 1 cut(s) | 1437 |
| AclWI | GGATC | 8 cut(s) | 45, 499, 545, 643, 1008, 1198, 1752, 2159 |
| AcoI | YGGCCR | 3 cut(s) | 715, 1393, 1780 |
| AcsI | RAATTY | 6 cut(s) | 76, 111, 362, 375, 1312, 1581 |
| AcuI | CTGAAG | 3 cut(s) | 273, 1085, 1695 |
| AfaI | GTAC | 5 cut(s) | 311, 2032, 2041, 2058, 2094 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 339, 388, 1078, 1329, 1471, 1812, 2009 |
| AflII | CTTAAG | 1 cut(s) | 1763 |
| AflIII | ACRYGT | 1 cut(s) | 1620 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1624 |
| AjnI | CCWGG | 3 cut(s) | 982, 1130, 2102 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2125, 2157 |
| AluBI | AGCT | 9 cut(s) | 470, 521, 692, 787, 1063, 1261, 1400, 1918, 2063 |
| AluI | AGCT | 9 cut(s) | 470, 521, 692, 787, 1063, 1261, 1400, 1918, 2063 |
| Alw21I | GWGCWC | 1 cut(s) | 694 |
| Alw26I | GTCTC | 2 cut(s) | 785, 2109 |
| AlwI | GGATC | 8 cut(s) | 45, 499, 545, 643, 1008, 1198, 1752, 2159 |
| AoxI | GGCC | 7 cut(s) | 450, 617, 715, 1393, 1780, 2015, 2051 |
| ApeKI | GCWGC | 5 cut(s) | 1672, 1840, 1843, 1979, 2123 |
| ApoI | RAATTY | 6 cut(s) | 76, 111, 362, 375, 1312, 1581 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1112, 1144 |
| AseI | ATTAAT | 3 cut(s) | 674, 1515, 1874 |
| AspS9I | GGNCC | 5 cut(s) | 1113, 1128, 1474, 1626, 1640 |
| AsuC2I | CCSGG | 1 cut(s) | 1677 |
| AsuHPI | GGTGA | 5 cut(s) | 20, 349, 961, 1267, 2121 |
| AsuNHI | GCTAGC | 1 cut(s) | 517 |
| AvaII | GGWCC | 5 cut(s) | 1113, 1128, 1474, 1626, 1640 |
| BalI | TGGCCA | 2 cut(s) | 717, 1782 |
| BanI | GGYRCC | 3 cut(s) | 601, 1388, 1421 |
| BanII | GRGCYC | 1 cut(s) | 694 |
| BbsI | GAAGAC | 6 cut(s) | 216, 707, 1574, 1694, 1840, 2133 |
| Bbv12I | GWGCWC | 1 cut(s) | 694 |
| BbvCI | CCTCAGC | 1 cut(s) | 1919 |
| BbvI | GCAGC | 5 cut(s) | 1684, 1827, 1830, 1991, 2110 |
| BccI | CCATC | 5 cut(s) | 257, 409, 680, 1464, 1957 |
| BciT130I | CCWGG | 3 cut(s) | 984, 1132, 2104 |
| BciVI | GTATCC | 1 cut(s) | 1658 |
| BcnI | CCSGG | 1 cut(s) | 1677 |
| BcoDI | GTCTC | 2 cut(s) | 785, 2109 |
| BfaI | CTAG | 5 cut(s) | 518, 1215, 1847, 2028, 2073 |
| BfmI | CTRYAG | 3 cut(s) | 454, 664, 732 |
| BfrI | CTTAAG | 1 cut(s) | 1763 |
| BfuAI | ACCTGC | 1 cut(s) | 910 |
| BfuI | GTATCC | 1 cut(s) | 1658 |
| BisI | GCNGC | 5 cut(s) | 1673, 1841, 1844, 1980, 2124 |
| BlsI | GCNGC | 5 cut(s) | 1674, 1842, 1845, 1981, 2125 |
| BmcAI | AGTACT | 1 cut(s) | 2032 |
| Bme1390I | CCNGG | 4 cut(s) | 984, 1132, 1677, 2104 |
| Bme18I | GGWCC | 5 cut(s) | 1113, 1128, 1474, 1626, 1640 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1624 |
| BmgT120I | GGNCC | 5 cut(s) | 1113, 1128, 1474, 1626, 1640 |
| BmiI | GGNNCC | 6 cut(s) | 603, 1115, 1390, 1423, 1475, 1533 |
| BmrFI | CCNGG | 4 cut(s) | 984, 1132, 1677, 2104 |
| BmtI | GCTAGC | 1 cut(s) | 521 |
| BoxI | GACNNNNGTC | 1 cut(s) | 216 |
| BpiI | GAAGAC | 6 cut(s) | 216, 707, 1574, 1694, 1840, 2133 |
| BpmI | CTGGAG | 1 cut(s) | 809 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1919 |
| BpuEI | CTTGAG | 2 cut(s) | 1547, 1993 |
| BpuMI | CCSGG | 1 cut(s) | 1677 |
| BsaJI | CCNNGG | 6 cut(s) | 145, 333, 1131, 1306, 1932, 2103 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 812, 842, 1052, 1082 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 339, 388, 1078, 1329, 1471, 1812, 2009 |
| Bse118I | RCCGGY | 1 cut(s) | 1391 |
| Bse1I | ACTGG | 1 cut(s) | 1486 |
| BseBI | CCWGG | 3 cut(s) | 984, 1132, 2104 |
| BseDI | CCNNGG | 6 cut(s) | 145, 333, 1131, 1306, 1932, 2103 |
| BseGI | GGATG | 5 cut(s) | 268, 691, 1087, 1371, 1711 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 339, 388, 1078, 1329, 1471, 1812, 2009 |
| BseMII | CTCAG | 3 cut(s) | 606, 1392, 1910 |
| BseNI | ACTGG | 1 cut(s) | 1486 |
| BseRI | GAGGAG | 4 cut(s) | 1073, 1282, 1875, 1895 |
| BseXI | GCAGC | 5 cut(s) | 1684, 1827, 1830, 1991, 2110 |
| BshFI | GGCC | 7 cut(s) | 452, 619, 717, 1395, 1782, 2017, 2053 |
| BshNI | GGYRCC | 3 cut(s) | 601, 1388, 1421 |
| BsiHKAI | GWGCWC | 1 cut(s) | 694 |
| BsiSI | CCGG | 2 cut(s) | 1392, 1677 |
| BslFI | GGGAC | 3 cut(s) | 1054, 1099, 1487 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 339, 388, 1078, 1329, 1471, 1812, 2009 |
| BsmAI | GTCTC | 2 cut(s) | 785, 2109 |
| BsmFI | GGGAC | 3 cut(s) | 1054, 1099, 1487 |
| BsnI | GGCC | 7 cut(s) | 452, 619, 717, 1395, 1782, 2017, 2053 |
| Bsp1286I | GDGCHC | 1 cut(s) | 694 |
| Bsp1407I | TGTACA | 2 cut(s) | 2056, 2092 |
| Bsp19I | CCATGG | 2 cut(s) | 333, 1306 |
| BspANI | GGCC | 7 cut(s) | 452, 619, 717, 1395, 1782, 2017, 2053 |
| BspCNI | CTCAG | 3 cut(s) | 605, 1393, 1911 |
| BspHI | TCATGA | 2 cut(s) | 40, 993 |
| BspLI | GGNNCC | 6 cut(s) | 603, 1115, 1390, 1423, 1475, 1533 |
| BspMI | ACCTGC | 1 cut(s) | 910 |
| BspOI | GCTAGC | 1 cut(s) | 521 |
| BspPI | GGATC | 8 cut(s) | 45, 499, 545, 643, 1008, 1198, 1752, 2159 |
| BspT107I | GGYRCC | 3 cut(s) | 601, 1388, 1421 |
| BspTI | CTTAAG | 1 cut(s) | 1763 |
| BsrFI | RCCGGY | 1 cut(s) | 1391 |
| BsrGI | TGTACA | 2 cut(s) | 2056, 2092 |
| BsrI | ACTGG | 1 cut(s) | 1486 |
| BssAI | RCCGGY | 1 cut(s) | 1391 |
| BssECI | CCNNGG | 6 cut(s) | 145, 333, 1131, 1306, 1932, 2103 |
| BssT1I | CCWWGG | 4 cut(s) | 145, 333, 1306, 1932 |
| Bst2UI | CCWGG | 3 cut(s) | 984, 1132, 2104 |
| Bst4CI | ACNGT | 3 cut(s) | 218, 358, 565 |
| Bst6I | CTCTTC | 5 cut(s) | 48, 526, 906, 1239, 1852 |
| BstAFI | CTTAAG | 1 cut(s) | 1763 |
| BstAUI | TGTACA | 2 cut(s) | 2056, 2092 |
| BstC8I | GCNNGC | 6 cut(s) | 238, 421, 519, 1393, 1496, 1500 |
| BstDEI | CTNAG | 4 cut(s) | 405, 592, 1401, 1919 |
| BstDSI | CCRYGG | 2 cut(s) | 333, 1306 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 386, 1076, 1810, 2007 |
| BstF5I | GGATG | 5 cut(s) | 268, 691, 1087, 1371, 1711 |
| BstMAI | GTCTC | 2 cut(s) | 785, 2109 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 458, 467, 518, 554, 1397, 1508, 1681, 1779 |
| BstNI | CCWGG | 3 cut(s) | 984, 1132, 2104 |
| BstNSI | RCATGY | 4 cut(s) | 1168, 1458, 1502, 1624 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 216 |
| BstSCI | CCNGG | 4 cut(s) | 982, 1130, 1675, 2102 |
| BstSFI | CTRYAG | 3 cut(s) | 454, 664, 732 |
| BstV1I | GCAGC | 5 cut(s) | 1684, 1827, 1830, 1991, 2110 |
| BstV2I | GAAGAC | 6 cut(s) | 216, 707, 1574, 1694, 1840, 2133 |
| BstX2I | RGATCY | 1 cut(s) | 635 |
| BstYI | RGATCY | 1 cut(s) | 635 |
| BsuI | GTATCC | 1 cut(s) | 1658 |
| BsuRI | GGCC | 7 cut(s) | 452, 619, 717, 1395, 1782, 2017, 2053 |
| BtgI | CCRYGG | 2 cut(s) | 333, 1306 |
| BtsCI | GGATG | 5 cut(s) | 268, 691, 1087, 1371, 1711 |
| BveI | ACCTGC | 1 cut(s) | 910 |
| Cac8I | GCNNGC | 6 cut(s) | 238, 421, 519, 1393, 1496, 1500 |
| CciI | TCATGA | 2 cut(s) | 40, 993 |
| Cfr10I | RCCGGY | 1 cut(s) | 1391 |
| Cfr13I | GGNCC | 5 cut(s) | 1113, 1128, 1474, 1626, 1640 |
| Csp6I | GTAC | 5 cut(s) | 310, 2031, 2040, 2057, 2093 |
| CspCI | CAANNNNNGTGG | 3 cut(s) | 134, 169, 2158 |
| CviQI | GTAC | 5 cut(s) | 310, 2031, 2040, 2057, 2093 |
| DdeI | CTNAG | 4 cut(s) | 405, 592, 1401, 1919 |
| DraI | TTTAAA | 1 cut(s) | 87 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1624 |
| EaeI | YGGCCR | 3 cut(s) | 715, 1393, 1780 |
| Eam1104I | CTCTTC | 5 cut(s) | 48, 526, 906, 1239, 1852 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1624 |
| EarI | CTCTTC | 5 cut(s) | 48, 526, 906, 1239, 1852 |
| Ecl136II | GAGCTC | 1 cut(s) | 692 |
| Eco130I | CCWWGG | 4 cut(s) | 145, 333, 1306, 1932 |
| Eco147I | AGGCCT | 2 cut(s) | 2017, 2053 |
| Eco24I | GRGCYC | 1 cut(s) | 694 |
| Eco47I | GGWCC | 5 cut(s) | 1113, 1128, 1474, 1626, 1640 |
| Eco53kI | GAGCTC | 1 cut(s) | 692 |
| Eco57I | CTGAAG | 3 cut(s) | 273, 1085, 1695 |
| EcoICRI | GAGCTC | 1 cut(s) | 692 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 386, 1076, 1810, 2007 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1113, 1474 |
| EcoRII | CCWGG | 3 cut(s) | 982, 1130, 2102 |
| EcoT14I | CCWWGG | 4 cut(s) | 145, 333, 1306, 1932 |
| EcoT22I | ATGCAT | 2 cut(s) | 127, 306 |
| EcoT38I | GRGCYC | 1 cut(s) | 694 |
| ErhI | CCWWGG | 4 cut(s) | 145, 333, 1306, 1932 |
| FaqI | GGGAC | 3 cut(s) | 1054, 1099, 1487 |
| FauNDI | CATATG | 1 cut(s) | 1537 |
| FblI | GTMKAC | 1 cut(s) | 1437 |
| Fnu4HI | GCNGC | 5 cut(s) | 1673, 1841, 1844, 1980, 2124 |
| FokI | GGATG | 5 cut(s) | 275, 698, 1094, 1358, 1718 |
| FriOI | GRGCYC | 1 cut(s) | 694 |
| Fsp4HI | GCNGC | 5 cut(s) | 1673, 1841, 1844, 1980, 2124 |
| FspBI | CTAG | 5 cut(s) | 518, 1215, 1847, 2028, 2073 |
| GluI | GCNGC | 5 cut(s) | 1673, 1841, 1844, 1980, 2124 |
| GsuI | CTGGAG | 1 cut(s) | 809 |
| HaeIII | GGCC | 7 cut(s) | 452, 619, 717, 1395, 1782, 2017, 2053 |
| HapII | CCGG | 2 cut(s) | 1392, 1677 |
| HincII | GTYRAC | 3 cut(s) | 568, 1438, 1609 |
| HindII | GTYRAC | 3 cut(s) | 568, 1438, 1609 |
| HinfI | GANTC | 6 cut(s) | 44, 61, 91, 370, 800, 1485 |
| HpaI | GTTAAC | 1 cut(s) | 1609 |
| HpaII | CCGG | 2 cut(s) | 1392, 1677 |
| HphI | GGTGA | 5 cut(s) | 20, 349, 961, 1267, 2121 |
| Hpy166II | GTNNAC | 4 cut(s) | 568, 960, 1438, 1609 |
| Hpy188I | TCNGA | 5 cut(s) | 595, 642, 1208, 1714, 1812 |
| Hpy188III | TCNNGA | 7 cut(s) | 41, 172, 367, 994, 1564, 2112, 2155 |
| Hpy8I | GTNNAC | 4 cut(s) | 568, 960, 1438, 1609 |
| HpyCH4III | ACNGT | 3 cut(s) | 218, 358, 565 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 458, 467, 518, 554, 1397, 1508, 1681, 1779 |
| HpyF3I | CTNAG | 4 cut(s) | 405, 592, 1401, 1919 |
| KroI | GCCGGC | 1 cut(s) | 1391 |
| KroNI | GCCGGC | 1 cut(s) | 1393 |
| KspAI | GTTAAC | 1 cut(s) | 1609 |
| LmnI | GCTCC | 4 cut(s) | 157, 502, 689, 1060 |
| Lsp1109I | GCAGC | 5 cut(s) | 1684, 1827, 1830, 1991, 2110 |
| MaeI | CTAG | 5 cut(s) | 518, 1215, 1847, 2028, 2073 |
| MaeIII | GTNAC | 6 cut(s) | 578, 878, 1160, 1231, 1546, 1790 |
| MfeI | CAATTG | 1 cut(s) | 1774 |
| MflI | RGATCY | 1 cut(s) | 635 |
| MhlI | GDGCHC | 1 cut(s) | 694 |
| MlsI | TGGCCA | 2 cut(s) | 717, 1782 |
| MluNI | TGGCCA | 2 cut(s) | 717, 1782 |
| MlyI | GAGTC | 1 cut(s) | 794 |
| MmeI | TCCRAC | 1 cut(s) | 1221 |
| Mox20I | TGGCCA | 2 cut(s) | 717, 1782 |
| Mph1103I | ATGCAT | 2 cut(s) | 127, 306 |
| MroNI | GCCGGC | 1 cut(s) | 1391 |
| MscI | TGGCCA | 2 cut(s) | 717, 1782 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1459, 1619 |
| Msp20I | TGGCCA | 2 cut(s) | 717, 1782 |
| MspCI | CTTAAG | 1 cut(s) | 1763 |
| MspI | CCGG | 2 cut(s) | 1392, 1677 |
| MspR9I | CCNGG | 4 cut(s) | 984, 1132, 1677, 2104 |
| MunI | CAATTG | 1 cut(s) | 1774 |
| MvaI | CCWGG | 3 cut(s) | 984, 1132, 2104 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 458, 467, 518, 554, 1397, 1508, 1681, 1779 |
| NaeI | GCCGGC | 1 cut(s) | 1393 |
| NciI | CCSGG | 1 cut(s) | 1677 |
| NcoI | CCATGG | 2 cut(s) | 333, 1306 |
| NdeI | CATATG | 1 cut(s) | 1537 |
| NgoMIV | GCCGGC | 1 cut(s) | 1391 |
| NheI | GCTAGC | 1 cut(s) | 517 |
| NlaIV | GGNNCC | 6 cut(s) | 603, 1115, 1390, 1423, 1475, 1533 |
| NmuCI | GTSAC | 5 cut(s) | 578, 878, 1160, 1231, 1790 |
| NsiI | ATGCAT | 2 cut(s) | 127, 306 |
| NspI | RCATGY | 4 cut(s) | 1168, 1458, 1502, 1624 |
| PaeI | GCATGC | 1 cut(s) | 1502 |
| PagI | TCATGA | 2 cut(s) | 40, 993 |
| PceI | AGGCCT | 2 cut(s) | 2017, 2053 |
| PciI | ACATGT | 1 cut(s) | 1620 |
| PdiI | GCCGGC | 1 cut(s) | 1393 |
| PfeI | GAWTC | 5 cut(s) | 44, 61, 91, 370, 1485 |
| PfoI | TCCNGGA | 1 cut(s) | 982 |
| PkrI | GCNGC | 5 cut(s) | 1674, 1842, 1845, 1981, 2125 |
| PleI | GAGTC | 1 cut(s) | 794 |
| PpsI | GAGTC | 1 cut(s) | 794 |
| PpuMI | RGGWCCY | 2 cut(s) | 1113, 1474 |
| PscI | ACATGT | 1 cut(s) | 1620 |
| PshAI | GACNNNNGTC | 1 cut(s) | 216 |
| PshBI | ATTAAT | 3 cut(s) | 674, 1515, 1874 |
| PsiI | TTATAA | 2 cut(s) | 1089, 1278 |
| Psp124BI | GAGCTC | 1 cut(s) | 694 |
| Psp5II | RGGWCCY | 2 cut(s) | 1113, 1474 |
| Psp6I | CCWGG | 3 cut(s) | 982, 1130, 2102 |
| PspGI | CCWGG | 3 cut(s) | 982, 1130, 2102 |
| PspN4I | GGNNCC | 6 cut(s) | 603, 1115, 1390, 1423, 1475, 1533 |
| PspPI | GGNCC | 5 cut(s) | 1113, 1128, 1474, 1626, 1640 |
| PspPPI | RGGWCCY | 2 cut(s) | 1113, 1474 |
| PsuI | RGATCY | 1 cut(s) | 635 |
| RsaI | GTAC | 5 cut(s) | 311, 2032, 2041, 2058, 2094 |
| RsaNI | GTAC | 5 cut(s) | 310, 2031, 2040, 2057, 2093 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1459, 1619 |
| SacI | GAGCTC | 1 cut(s) | 694 |
| SalI | GTCGAC | 1 cut(s) | 1436 |
| SatI | GCNGC | 5 cut(s) | 1673, 1841, 1844, 1980, 2124 |
| Sau96I | GGNCC | 5 cut(s) | 1113, 1128, 1474, 1626, 1640 |
| ScaI | AGTACT | 1 cut(s) | 2032 |
| SchI | GAGTC | 1 cut(s) | 794 |
| ScrFI | CCNGG | 4 cut(s) | 984, 1132, 1677, 2104 |
| SduI | GDGCHC | 1 cut(s) | 694 |
| SfcI | CTRYAG | 3 cut(s) | 454, 664, 732 |
| SinI | GGWCC | 5 cut(s) | 1113, 1128, 1474, 1626, 1640 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1459, 1619 |
| SmlI | CTYRAG | 3 cut(s) | 1562, 1763, 1972 |
| SmoI | CTYRAG | 3 cut(s) | 1562, 1763, 1972 |
| SphI | GCATGC | 1 cut(s) | 1502 |
| SseBI | AGGCCT | 2 cut(s) | 2017, 2053 |
| SspI | AATATT | 1 cut(s) | 1414 |
| SspMI | CTAG | 5 cut(s) | 518, 1215, 1847, 2028, 2073 |
| SstI | GAGCTC | 1 cut(s) | 694 |
| StuI | AGGCCT | 2 cut(s) | 2017, 2053 |
| StyD4I | CCNGG | 4 cut(s) | 982, 1130, 1675, 2102 |
| StyI | CCWWGG | 4 cut(s) | 145, 333, 1306, 1932 |
| TaaI | ACNGT | 3 cut(s) | 218, 358, 565 |
| TaqI | TCGA | 1 cut(s) | 1437 |
| TatI | WGTACW | 5 cut(s) | 309, 2030, 2039, 2056, 2092 |
| TfiI | GAWTC | 5 cut(s) | 44, 61, 91, 370, 1485 |
| TseFI | GTSAC | 5 cut(s) | 578, 878, 1160, 1231, 1790 |
| TseI | GCWGC | 5 cut(s) | 1672, 1840, 1843, 1979, 2123 |
| Tsp45I | GTSAC | 5 cut(s) | 578, 878, 1160, 1231, 1790 |
| TspDTI | ATGAA | 6 cut(s) | 57, 157, 747, 862, 1010, 1814 |
| Vha464I | CTTAAG | 1 cut(s) | 1763 |
| VpaK11BI | GGWCC | 5 cut(s) | 1113, 1128, 1474, 1626, 1640 |
| VspI | ATTAAT | 3 cut(s) | 674, 1515, 1874 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 386, 1076, 1810, 2007 |
| XapI | RAATTY | 6 cut(s) | 76, 111, 362, 375, 1312, 1581 |
| XceI | RCATGY | 4 cut(s) | 1168, 1458, 1502, 1624 |
| XmiI | GTMKAC | 1 cut(s) | 1437 |
| XspI | CTAG | 5 cut(s) | 518, 1215, 1847, 2028, 2073 |
| ZrmI | AGTACT | 1 cut(s) | 2032 |
| Zsp2I | ATGCAT | 2 cut(s) | 127, 306 |