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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1181, 1261 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 741 |
| AccI | GTMKAC | 1 cut(s) | 373 |
| AciI | CCGC | 2 cut(s) | 377, 1713 |
| AclWI | GGATC | 1 cut(s) | 422 |
| AcsI | RAATTY | 3 cut(s) | 314, 545, 1530 |
| AcuI | CTGAAG | 2 cut(s) | 180, 225 |
| AfaI | GTAC | 4 cut(s) | 441, 784, 839, 1251 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 225, 561, 741, 929, 1847 |
| AflII | CTTAAG | 2 cut(s) | 52, 940 |
| AflIII | ACRYGT | 1 cut(s) | 1389 |
| AgsI | TTSAA | 9 cut(s) | 60, 125, 763, 859, 872, 1262, 1384, 1463, 1547 |
| AjnI | CCWGG | 3 cut(s) | 775, 928, 1881 |
| AleI | CACNNNNGTG | 1 cut(s) | 522 |
| AluBI | AGCT | 9 cut(s) | 256, 434, 569, 589, 739, 1265, 1316, 1681, 1775 |
| AluI | AGCT | 9 cut(s) | 256, 434, 569, 589, 739, 1265, 1316, 1681, 1775 |
| Alw26I | GTCTC | 1 cut(s) | 1010 |
| AlwI | GGATC | 1 cut(s) | 422 |
| AoxI | GGCC | 2 cut(s) | 1769, 1849 |
| ApeKI | GCWGC | 5 cut(s) | 434, 851, 1229, 1232, 1678 |
| ApoI | RAATTY | 3 cut(s) | 314, 545, 1530 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1015, 1047 |
| AspS9I | GGNCC | 3 cut(s) | 482, 920, 1523 |
| AsuHPI | GGTGA | 3 cut(s) | 158, 824, 1288 |
| AsuII | TTCGAA | 1 cut(s) | 1047 |
| AsuNHI | GCTAGC | 1 cut(s) | 1312 |
| AvaII | GGWCC | 3 cut(s) | 482, 920, 1523 |
| AxyI | CCTNAGG | 1 cut(s) | 1846 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1233, 1266 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1825, 1857 |
| BbsI | GAAGAC | 2 cut(s) | 244, 1893 |
| BbvI | GCAGC | 5 cut(s) | 421, 838, 1241, 1244, 1690 |
| BccI | CCATC | 2 cut(s) | 896, 933 |
| BceAI | ACGGC | 1 cut(s) | 985 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 73, 107 |
| BciT130I | CCWGG | 3 cut(s) | 777, 930, 1883 |
| BcoDI | GTCTC | 1 cut(s) | 1010 |
| BfaI | CTAG | 9 cut(s) | 305, 380, 425, 1109, 1313, 1488, 1527, 1722, 1734 |
| BfmI | CTRYAG | 2 cut(s) | 435, 888 |
| BfrI | CTTAAG | 2 cut(s) | 52, 940 |
| BfuAI | ACCTGC | 2 cut(s) | 1181, 1261 |
| BglII | AGATCT | 3 cut(s) | 150, 1038, 1343 |
| BisI | GCNGC | 5 cut(s) | 435, 852, 1230, 1233, 1679 |
| BlsI | GCNGC | 5 cut(s) | 436, 853, 1231, 1234, 1680 |
| BmcAI | AGTACT | 1 cut(s) | 784 |
| Bme1390I | CCNGG | 3 cut(s) | 777, 930, 1883 |
| Bme18I | GGWCC | 3 cut(s) | 482, 920, 1523 |
| BmgT120I | GGNCC | 3 cut(s) | 482, 920, 1523 |
| BmiI | GGNNCC | 3 cut(s) | 483, 921, 922 |
| BmrFI | CCNGG | 3 cut(s) | 777, 930, 1883 |
| BmsI | GCATC | 5 cut(s) | 81, 949, 1105, 1122, 1411 |
| BmtI | GCTAGC | 1 cut(s) | 1316 |
| BpiI | GAAGAC | 2 cut(s) | 244, 1893 |
| Bpu10I | CCTNAGC | 1 cut(s) | 252 |
| Bpu14I | TTCGAA | 1 cut(s) | 1047 |
| BsaJI | CCNNGG | 3 cut(s) | 83, 776, 808 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 225, 561, 741, 929, 1847 |
| Bse1I | ACTGG | 2 cut(s) | 622, 1204 |
| Bse21I | CCTNAGG | 1 cut(s) | 1846 |
| BseBI | CCWGG | 3 cut(s) | 777, 930, 1883 |
| BseDI | CCNNGG | 3 cut(s) | 83, 776, 808 |
| BseGI | GGATG | 1 cut(s) | 925 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 225, 561, 741, 929, 1847 |
| BseMII | CTCAG | 1 cut(s) | 189 |
| BseNI | ACTGG | 2 cut(s) | 622, 1204 |
| BseRI | GAGGAG | 2 cut(s) | 547, 599 |
| BseXI | GCAGC | 5 cut(s) | 421, 838, 1241, 1244, 1690 |
| BsgI | GTGCAG | 1 cut(s) | 1209 |
| Bsh1285I | CGRYCG | 1 cut(s) | 377 |
| BshFI | GGCC | 2 cut(s) | 1771, 1851 |
| BsiEI | CGRYCG | 1 cut(s) | 377 |
| BslFI | GGGAC | 3 cut(s) | 495, 933, 1683 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 225, 561, 741, 929, 1847 |
| BsmAI | GTCTC | 1 cut(s) | 1010 |
| BsmFI | GGGAC | 3 cut(s) | 495, 933, 1683 |
| BsmI | GAATGC | 2 cut(s) | 538, 1689 |
| BsnI | GGCC | 2 cut(s) | 1771, 1851 |
| Bsp119I | TTCGAA | 1 cut(s) | 1047 |
| Bsp1407I | TGTACA | 1 cut(s) | 837 |
| Bsp143I | GATC | 6 cut(s) | 150, 414, 571, 593, 1038, 1343 |
| BspACI | CCGC | 2 cut(s) | 377, 1713 |
| BspANI | GGCC | 2 cut(s) | 1771, 1851 |
| BspCNI | CTCAG | 1 cut(s) | 190 |
| BspLI | GGNNCC | 3 cut(s) | 483, 921, 922 |
| BspMAI | CTGCAG | 1 cut(s) | 439 |
| BspMI | ACCTGC | 2 cut(s) | 1181, 1261 |
| BspOI | GCTAGC | 1 cut(s) | 1316 |
| BspPI | GGATC | 1 cut(s) | 422 |
| BspQI | GCTCTTC | 1 cut(s) | 201 |
| BspT104I | TTCGAA | 1 cut(s) | 1047 |
| BspTI | CTTAAG | 2 cut(s) | 52, 940 |
| BsrGI | TGTACA | 1 cut(s) | 837 |
| BsrI | ACTGG | 2 cut(s) | 622, 1204 |
| BssECI | CCNNGG | 3 cut(s) | 83, 776, 808 |
| BssMI | GATC | 6 cut(s) | 150, 414, 571, 593, 1038, 1343 |
| BssT1I | CCWWGG | 1 cut(s) | 808 |
| Bst2UI | CCWGG | 3 cut(s) | 777, 930, 1883 |
| Bst4CI | ACNGT | 3 cut(s) | 490, 1249, 1829 |
| Bst6I | CTCTTC | 4 cut(s) | 201, 303, 750, 1828 |
| BstAFI | CTTAAG | 2 cut(s) | 52, 940 |
| BstAUI | TGTACA | 1 cut(s) | 837 |
| BstBI | TTCGAA | 1 cut(s) | 1047 |
| BstC8I | GCNNGC | 2 cut(s) | 1314, 1773 |
| BstDEI | CTNAG | 6 cut(s) | 198, 252, 590, 1493, 1503, 1846 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1845 |
| BstF5I | GGATG | 1 cut(s) | 925 |
| BstKTI | GATC | 6 cut(s) | 153, 417, 574, 596, 1041, 1346 |
| BstMAI | GTCTC | 1 cut(s) | 1010 |
| BstMBI | GATC | 6 cut(s) | 150, 414, 571, 593, 1038, 1343 |
| BstMCI | CGRYCG | 1 cut(s) | 377 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 350, 1238, 1262, 1338 |
| BstNI | CCWGG | 3 cut(s) | 777, 930, 1883 |
| BstNSI | RCATGY | 2 cut(s) | 976, 1393 |
| BstSCI | CCNGG | 3 cut(s) | 775, 928, 1881 |
| BstSFI | CTRYAG | 2 cut(s) | 435, 888 |
| BstV1I | GCAGC | 5 cut(s) | 421, 838, 1241, 1244, 1690 |
| BstV2I | GAAGAC | 2 cut(s) | 244, 1893 |
| BstX2I | RGATCY | 3 cut(s) | 150, 1038, 1343 |
| BstYI | RGATCY | 3 cut(s) | 150, 1038, 1343 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1846 |
| BsuRI | GGCC | 2 cut(s) | 1771, 1851 |
| BtgZI | GCGATG | 1 cut(s) | 1128 |
| BtsCI | GGATG | 1 cut(s) | 925 |
| BtsI | GCAGTG | 2 cut(s) | 396, 1308 |
| BtsIMutI | CAGTG | 6 cut(s) | 156, 396, 1089, 1197, 1308, 1834 |
| BveI | ACCTGC | 2 cut(s) | 1181, 1261 |
| Cac8I | GCNNGC | 2 cut(s) | 1314, 1773 |
| Cfr13I | GGNCC | 3 cut(s) | 482, 920, 1523 |
| CseI | GACGC | 1 cut(s) | 1519 |
| Csp6I | GTAC | 4 cut(s) | 440, 783, 838, 1250 |
| CviAII | CATG | 6 cut(s) | 212, 325, 625, 973, 1390, 1703 |
| CviQI | GTAC | 4 cut(s) | 440, 783, 838, 1250 |
| DdeI | CTNAG | 6 cut(s) | 198, 252, 590, 1493, 1503, 1846 |
| DpnI | GATC | 6 cut(s) | 152, 416, 573, 595, 1040, 1345 |
| DpnII | GATC | 6 cut(s) | 150, 414, 571, 593, 1038, 1343 |
| DraI | TTTAAA | 2 cut(s) | 829, 1536 |
| Eam1104I | CTCTTC | 4 cut(s) | 201, 303, 750, 1828 |
| EarI | CTCTTC | 4 cut(s) | 201, 303, 750, 1828 |
| Eco130I | CCWWGG | 1 cut(s) | 808 |
| Eco147I | AGGCCT | 1 cut(s) | 1851 |
| Eco47I | GGWCC | 3 cut(s) | 482, 920, 1523 |
| Eco57I | CTGAAG | 2 cut(s) | 180, 225 |
| Eco81I | CCTNAGG | 1 cut(s) | 1846 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1845 |
| EcoO109I | RGGNCCY | 1 cut(s) | 920 |
| EcoRII | CCWGG | 3 cut(s) | 775, 928, 1881 |
| EcoT14I | CCWWGG | 1 cut(s) | 808 |
| ErhI | CCWWGG | 1 cut(s) | 808 |
| FaeI | CATG | 6 cut(s) | 215, 328, 628, 976, 1393, 1706 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 851, 883, 1642, 1674, 1759, 1791 |
| FaqI | GGGAC | 3 cut(s) | 495, 933, 1683 |
| FatI | CATG | 6 cut(s) | 211, 324, 624, 972, 1389, 1702 |
| FauNDI | CATATG | 2 cut(s) | 355, 842 |
| FblI | GTMKAC | 1 cut(s) | 373 |
| Fnu4HI | GCNGC | 5 cut(s) | 435, 852, 1230, 1233, 1679 |
| FokI | GGATG | 1 cut(s) | 912 |
| Fsp4HI | GCNGC | 5 cut(s) | 435, 852, 1230, 1233, 1679 |
| FspBI | CTAG | 9 cut(s) | 305, 380, 425, 1109, 1313, 1488, 1527, 1722, 1734 |
| GluI | GCNGC | 5 cut(s) | 435, 852, 1230, 1233, 1679 |
| HaeIII | GGCC | 2 cut(s) | 1771, 1851 |
| HgaI | GACGC | 1 cut(s) | 1519 |
| Hin1II | CATG | 6 cut(s) | 215, 328, 628, 976, 1393, 1706 |
| HincII | GTYRAC | 1 cut(s) | 374 |
| HindII | GTYRAC | 1 cut(s) | 374 |
| HindIII | AAGCTT | 1 cut(s) | 737 |
| HphI | GGTGA | 3 cut(s) | 158, 824, 1288 |
| Hpy166II | GTNNAC | 5 cut(s) | 374, 676, 1509, 1739, 1753 |
| Hpy188III | TCNNGA | 1 cut(s) | 512 |
| Hpy8I | GTNNAC | 5 cut(s) | 374, 676, 1509, 1739, 1753 |
| HpyAV | CCTTC | 4 cut(s) | 472, 704, 1720, 1787 |
| HpyCH4III | ACNGT | 3 cut(s) | 490, 1249, 1829 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 350, 1238, 1262, 1338 |
| HpyF3I | CTNAG | 6 cut(s) | 198, 252, 590, 1493, 1503, 1846 |
| Hsp92II | CATG | 6 cut(s) | 215, 328, 628, 976, 1393, 1706 |
| KflI | GGGWCCC | 1 cut(s) | 920 |
| Kzo9I | GATC | 6 cut(s) | 150, 414, 571, 593, 1038, 1343 |
| LguI | GCTCTTC | 1 cut(s) | 201 |
| LmnI | GCTCC | 3 cut(s) | 586, 1338, 1812 |
| Lsp1109I | GCAGC | 5 cut(s) | 421, 838, 1241, 1244, 1690 |
| LweI | GCATC | 5 cut(s) | 81, 949, 1105, 1122, 1411 |
| MaeI | CTAG | 9 cut(s) | 305, 380, 425, 1109, 1313, 1488, 1527, 1722, 1734 |
| MaeIII | GTNAC | 6 cut(s) | 9, 45, 613, 703, 1193, 1449 |
| MalI | GATC | 6 cut(s) | 152, 416, 573, 595, 1040, 1345 |
| MboI | GATC | 6 cut(s) | 150, 414, 571, 593, 1038, 1343 |
| MfeI | CAATTG | 2 cut(s) | 1716, 1742 |
| MflI | RGATCY | 3 cut(s) | 150, 1038, 1343 |
| MlyI | GAGTC | 5 cut(s) | 209, 234, 284, 1135, 1406 |
| MmeI | TCCRAC | 3 cut(s) | 291, 426, 1501 |
| MseI | TTAA | 9 cut(s) | 53, 498, 828, 915, 941, 1211, 1404, 1535, 1856 |
| MslI | CAYNNNNRTG | 1 cut(s) | 522 |
| MspCI | CTTAAG | 2 cut(s) | 52, 940 |
| MspR9I | CCNGG | 3 cut(s) | 777, 930, 1883 |
| MunI | CAATTG | 2 cut(s) | 1716, 1742 |
| Mva1269I | GAATGC | 2 cut(s) | 538, 1689 |
| MvaI | CCWGG | 3 cut(s) | 777, 930, 1883 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 350, 1238, 1262, 1338 |
| NdeI | CATATG | 2 cut(s) | 355, 842 |
| NdeII | GATC | 6 cut(s) | 150, 414, 571, 593, 1038, 1343 |
| NheI | GCTAGC | 1 cut(s) | 1312 |
| NlaIII | CATG | 6 cut(s) | 215, 328, 628, 976, 1393, 1706 |
| NlaIV | GGNNCC | 3 cut(s) | 483, 921, 922 |
| NmuCI | GTSAC | 3 cut(s) | 613, 703, 1193 |
| NspI | RCATGY | 2 cut(s) | 976, 1393 |
| NspV | TTCGAA | 1 cut(s) | 1047 |
| OliI | CACNNNNGTG | 1 cut(s) | 522 |
| PceI | AGGCCT | 1 cut(s) | 1851 |
| PciI | ACATGT | 1 cut(s) | 1389 |
| PciSI | GCTCTTC | 1 cut(s) | 201 |
| PctI | GAATGC | 2 cut(s) | 538, 1689 |
| PfeI | GAWTC | 5 cut(s) | 16, 64, 116, 398, 1459 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 741 |
| PkrI | GCNGC | 5 cut(s) | 436, 853, 1231, 1234, 1680 |
| PleI | GAGTC | 5 cut(s) | 208, 234, 283, 1134, 1405 |
| PpsI | GAGTC | 5 cut(s) | 208, 234, 283, 1134, 1405 |
| PpuMI | RGGWCCY | 1 cut(s) | 920 |
| PscI | ACATGT | 1 cut(s) | 1389 |
| Psp5II | RGGWCCY | 1 cut(s) | 920 |
| Psp6I | CCWGG | 3 cut(s) | 775, 928, 1881 |
| PspGI | CCWGG | 3 cut(s) | 775, 928, 1881 |
| PspN4I | GGNNCC | 3 cut(s) | 483, 921, 922 |
| PspPI | GGNCC | 3 cut(s) | 482, 920, 1523 |
| PspPPI | RGGWCCY | 1 cut(s) | 920 |
| PstI | CTGCAG | 1 cut(s) | 439 |
| PsuI | RGATCY | 3 cut(s) | 150, 1038, 1343 |
| RsaI | GTAC | 4 cut(s) | 441, 784, 839, 1251 |
| RsaNI | GTAC | 4 cut(s) | 440, 783, 838, 1250 |
| RseI | CAYNNNNRTG | 1 cut(s) | 522 |
| SalI | GTCGAC | 1 cut(s) | 372 |
| SapI | GCTCTTC | 1 cut(s) | 201 |
| SaqAI | TTAA | 9 cut(s) | 53, 498, 828, 915, 941, 1211, 1404, 1535, 1856 |
| SatI | GCNGC | 5 cut(s) | 435, 852, 1230, 1233, 1679 |
| Sau3AI | GATC | 6 cut(s) | 150, 414, 571, 593, 1038, 1343 |
| Sau96I | GGNCC | 3 cut(s) | 482, 920, 1523 |
| ScaI | AGTACT | 1 cut(s) | 784 |
| SchI | GAGTC | 5 cut(s) | 209, 234, 284, 1135, 1406 |
| ScrFI | CCNGG | 3 cut(s) | 777, 930, 1883 |
| SfaNI | GCATC | 5 cut(s) | 81, 949, 1105, 1122, 1411 |
| SfcI | CTRYAG | 2 cut(s) | 435, 888 |
| SfuI | TTCGAA | 1 cut(s) | 1047 |
| SinI | GGWCC | 3 cut(s) | 482, 920, 1523 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 522 |
| SmlI | CTYRAG | 2 cut(s) | 52, 940 |
| SmoI | CTYRAG | 2 cut(s) | 52, 940 |
| SseBI | AGGCCT | 1 cut(s) | 1851 |
| SsiI | CCGC | 2 cut(s) | 377, 1713 |
| SspI | AATATT | 1 cut(s) | 1469 |
| SspMI | CTAG | 9 cut(s) | 305, 380, 425, 1109, 1313, 1488, 1527, 1722, 1734 |
| StuI | AGGCCT | 1 cut(s) | 1851 |
| StyD4I | CCNGG | 3 cut(s) | 775, 928, 1881 |
| StyI | CCWWGG | 1 cut(s) | 808 |
| TaaI | ACNGT | 3 cut(s) | 490, 1249, 1829 |
| TaqI | TCGA | 4 cut(s) | 373, 579, 596, 1047 |
| TatI | WGTACW | 2 cut(s) | 782, 837 |
| TfiI | GAWTC | 5 cut(s) | 16, 64, 116, 398, 1459 |
| Tru1I | TTAA | 9 cut(s) | 53, 498, 828, 915, 941, 1211, 1404, 1535, 1856 |
| Tru9I | TTAA | 9 cut(s) | 53, 498, 828, 915, 941, 1211, 1404, 1535, 1856 |
| TscAI | CASTG | 6 cut(s) | 163, 396, 1096, 1204, 1308, 1834 |
| TseFI | GTSAC | 3 cut(s) | 613, 703, 1193 |
| TseI | GCWGC | 5 cut(s) | 434, 851, 1229, 1232, 1678 |
| Tsp45I | GTSAC | 3 cut(s) | 613, 703, 1193 |
| TspDTI | ATGAA | 9 cut(s) | 17, 89, 228, 290, 341, 613, 1075, 1295, 1806 |
| TspGWI | ACGGA | 1 cut(s) | 427 |
| TspRI | CASTG | 6 cut(s) | 163, 396, 1096, 1204, 1308, 1834 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 741 |
| Vha464I | CTTAAG | 2 cut(s) | 52, 940 |
| VpaK11BI | GGWCC | 3 cut(s) | 482, 920, 1523 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1845 |
| XapI | RAATTY | 3 cut(s) | 314, 545, 1530 |
| XceI | RCATGY | 2 cut(s) | 976, 1393 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1332, 1879 |
| XmiI | GTMKAC | 1 cut(s) | 373 |
| XspI | CTAG | 9 cut(s) | 305, 380, 425, 1109, 1313, 1488, 1527, 1722, 1734 |
| ZrmI | AGTACT | 1 cut(s) | 784 |