Rorug07G0244700

Homeodomain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000452
Physical Location & Seq
Reverse (-)
22605730 .. 22606173
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0244700.1

Sequence Viewer

Length: 444 bp
ATGAAGCATGCTGAACAGTTTGTTGACCAGTACATTTCCAACCTTACCACAAGCCCTCTTGACCTTTCCAAGCCACTATGGGAAGTCCATATCCTCAATGTCAAAACCTCTGATGCAGAAGCTGTTGCAGTGATTCGGATTCACCACTCGATGGGGGATGGGGCATCCCTCATGTCACTTCTACTAGCTTGTGCTCTAAAAACATCGGACCCTGATGCATTGCCTACTGTTCCAACCAAGAGGAAACAGGAGGATAGTTCTTCAAGTGATTCGGGCGTGTTCTGGTGGTTCTTATTGACTATTTGGTCAGCAATCACATTGATAAGAAACACTCTTGTTGATCTTGTGCTGTTCATAGCCACTGCTCTGGTTCTTAAAGACACAAAGACTCCTATGAAAGGTCCACCTGGGGTGGAGTTTACTACCAAGCGCTTCTTGCACTGA

Protein Analysis

147

Amino Acids

16.29

Weight (kDa)

6.5

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WS_DGAT_cat PF03007 9 - 92 1.5e-11 Wax ester synthase/diacylglycerol acyltransferase catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000452)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 304
AccB7I CCANNNNNTGG 1 cut(s) 151
AfaI GTAC 1 cut(s) 32
AfeI AGCGCT 1 cut(s) 431
AfiI CCNNNNNNNGG 2 cut(s) 151, 398
AgsI TTSAA 1 cut(s) 264
AjnI CCWGG 1 cut(s) 406
AluBI AGCT 2 cut(s) 122, 188
AluI AGCT 2 cut(s) 122, 188
Alw21I GWGCWC 1 cut(s) 196
AlwNI CAGNNNCTG 1 cut(s) 122
Aor51HI AGCGCT 1 cut(s) 431
AspLEI GCGC 1 cut(s) 432
AspS9I GGNCC 2 cut(s) 208, 401
AsuHPI GGTGA 1 cut(s) 134
AvaII GGWCC 2 cut(s) 208, 401
Bbv12I GWGCWC 1 cut(s) 196
BccI CCATC 2 cut(s) 145, 152
BciT130I CCWGG 1 cut(s) 408
BfaI CTAG 1 cut(s) 185
BfoI RGCGCY 1 cut(s) 433
Bme1390I CCNGG 1 cut(s) 408
Bme18I GGWCC 2 cut(s) 208, 401
BmgT120I GGNCC 2 cut(s) 208, 401
BmiI GGNNCC 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 3 cut(s) 103, 173, 205
BsaJI CCNNGG 1 cut(s) 407
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 398
Bse1I ACTGG 1 cut(s) 28
Bse3DI GCAATG 1 cut(s) 218
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 1 cut(s) 407
BseGI GGATG 2 cut(s) 163, 164
BseLI CCNNNNNNNGG 2 cut(s) 151, 398
BseMI GCAATG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 196
BslI CCNNNNNNNGG 2 cut(s) 151, 398
Bsp1286I GDGCHC 1 cut(s) 196
Bsp143I GATC 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 218
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 407
BssMI GATC 1 cut(s) 340
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 2 cut(s) 18, 229
BstC8I GCNNGC 1 cut(s) 9
BstENI CCTNNNNNAGG 1 cut(s) 396
BstF5I GGATG 2 cut(s) 163, 164
BstH2I RGCGCY 1 cut(s) 433
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 1 cut(s) 343
BstMBI GATC 1 cut(s) 340
BstMWI GCNNNNNNNGC 1 cut(s) 436
BstNI CCWGG 1 cut(s) 408
BstNSI RCATGY 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 406
BstXI CCANNNNNNTGG 1 cut(s) 367
BtsCI GGATG 2 cut(s) 163, 164
BtsI GCAGTG 2 cut(s) 135, 360
BtsIMutI CAGTG 3 cut(s) 135, 360, 439
Cac8I GCNNGC 1 cut(s) 9
CaiI CAGNNNCTG 1 cut(s) 122
CfoI GCGC 1 cut(s) 432
Cfr13I GGNCC 2 cut(s) 208, 401
Csp6I GTAC 1 cut(s) 31
CviAII CATG 2 cut(s) 8, 172
CviJI RGCY 5 cut(s) 54, 73, 122, 188, 359
CviKI_1 RGCY 5 cut(s) 54, 73, 122, 188, 359
CviQI GTAC 1 cut(s) 31
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
DrdI GACNNNNNNGTC 1 cut(s) 304
DseDI GACNNNNNNGTC 1 cut(s) 304
Eco47I GGWCC 2 cut(s) 208, 401
Eco47III AGCGCT 1 cut(s) 431
EcoNI CCTNNNNNAGG 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 406
EcoT22I ATGCAT 1 cut(s) 220
FaeI CATG 2 cut(s) 11, 175
FaiI YATR 6 cut(s) 9, 79, 90, 173, 356, 395
FalI AAGNNNNNCTT 1 cut(s) 419
FatI CATG 2 cut(s) 7, 171
FokI GGATG 2 cut(s) 151, 170
FspBI CTAG 1 cut(s) 185
GlaI GCGC 1 cut(s) 431
HaeII RGCGCY 1 cut(s) 433
HhaI GCGC 1 cut(s) 432
Hin1II CATG 2 cut(s) 11, 175
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 4 cut(s) 133, 139, 269, 388
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 3 cut(s) 25, 404, 420
Hpy188I TCNGA 3 cut(s) 112, 138, 208
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 3 cut(s) 25, 404, 420
HpyCH4III ACNGT 2 cut(s) 18, 229
HpyCH4V TGCA 4 cut(s) 116, 128, 218, 439
HpyF10VI GCNNNNNNNGC 1 cut(s) 436
Hsp92II CATG 2 cut(s) 11, 175
HspAI GCGC 1 cut(s) 430
Kzo9I GATC 1 cut(s) 340
LpnPI CCDG 7 cut(s) 41, 225, 233, 268, 353, 393, 420
LweI GCATC 3 cut(s) 103, 173, 205
MaeI CTAG 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 174
MalI GATC 1 cut(s) 342
MboI GATC 1 cut(s) 340
MboII GAAGA 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 196
MlyI GAGTC 1 cut(s) 382
MmeI TCCRAC 2 cut(s) 63, 257
MnlI CCTC 6 cut(s) 66, 104, 118, 179, 234, 244
Mph1103I ATGCAT 1 cut(s) 220
MseI TTAA 1 cut(s) 375
MspR9I CCNGG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 408
MwoI GCNNNNNNNGC 1 cut(s) 436
NdeII GATC 1 cut(s) 340
NlaIII CATG 2 cut(s) 11, 175
NlaIV GGNNCC 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 174
NsiI ATGCAT 1 cut(s) 220
NspI RCATGY 1 cut(s) 11
PaeI GCATGC 1 cut(s) 11
PfeI GAWTC 3 cut(s) 133, 139, 269
PflMI CCANNNNNTGG 1 cut(s) 151
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 1 cut(s) 210
PspPI GGNCC 2 cut(s) 208, 401
PstNI CAGNNNCTG 1 cut(s) 122
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SaqAI TTAA 1 cut(s) 375
Sau3AI GATC 1 cut(s) 340
Sau96I GGNCC 2 cut(s) 208, 401
SchI GAGTC 1 cut(s) 382
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 1 cut(s) 196
SetI ASST 7 cut(s) 45, 66, 110, 124, 190, 403, 409
SfaNI GCATC 3 cut(s) 103, 173, 205
SinI GGWCC 2 cut(s) 208, 401
SphI GCATGC 1 cut(s) 11
SspMI CTAG 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 406
TaaI ACNGT 2 cut(s) 18, 229
TaqI TCGA 1 cut(s) 149
TatI WGTACW 1 cut(s) 30
TfiI GAWTC 3 cut(s) 133, 139, 269
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 2 cut(s) 135, 367
TseFI GTSAC 1 cut(s) 174
Tsp45I GTSAC 1 cut(s) 174
TspDTI ATGAA 3 cut(s) 17, 343, 410
TspRI CASTG 2 cut(s) 135, 367
Van91I CCANNNNNTGG 1 cut(s) 151
VpaK11BI GGWCC 2 cut(s) 208, 401
XagI CCTNNNNNAGG 1 cut(s) 396
XceI RCATGY 1 cut(s) 11
XspI CTAG 1 cut(s) 185
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.