Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1304 |
| Acc36I | ACCTGC | 1 cut(s) | 1680 |
| AccBSI | CCGCTC | 1 cut(s) | 1833 |
| AccI | GTMKAC | 2 cut(s) | 252, 1345 |
| AccII | CGCG | 1 cut(s) | 1158 |
| AciI | CCGC | 6 cut(s) | 411, 422, 551, 1156, 1738, 1831 |
| AclWI | GGATC | 5 cut(s) | 377, 533, 1022, 1322, 1476 |
| AcoI | YGGCCR | 1 cut(s) | 627 |
| AcsI | RAATTY | 3 cut(s) | 154, 1175, 1207 |
| AcuI | CTGAAG | 1 cut(s) | 1301 |
| AcyI | GRCGYC | 1 cut(s) | 378 |
| AfaI | GTAC | 1 cut(s) | 585 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 281, 1037, 1283, 1337 |
| AgsI | TTSAA | 7 cut(s) | 418, 871, 1066, 1114, 1234, 1650, 1820 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1715 |
| AjnI | CCWGG | 4 cut(s) | 222, 360, 1106, 1746 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 32 |
| Alw21I | GWGCWC | 1 cut(s) | 595 |
| Alw26I | GTCTC | 3 cut(s) | 250, 1250, 1702 |
| AlwI | GGATC | 5 cut(s) | 377, 533, 1022, 1322, 1476 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1442 |
| AoxI | GGCC | 6 cut(s) | 408, 489, 537, 627, 729, 1405 |
| ApeKI | GCWGC | 5 cut(s) | 237, 388, 614, 746, 1508 |
| ApoI | RAATTY | 3 cut(s) | 154, 1175, 1207 |
| AseI | ATTAAT | 1 cut(s) | 1655 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1773 |
| AspLEI | GCGC | 1 cut(s) | 1160 |
| AspS9I | GGNCC | 9 cut(s) | 313, 358, 489, 730, 772, 950, 1274, 1574, 1744 |
| AsuC2I | CCSGG | 1 cut(s) | 493 |
| AsuHPI | GGTGA | 4 cut(s) | 676, 713, 1183, 1717 |
| AsuII | TTCGAA | 2 cut(s) | 483, 712 |
| AvaII | GGWCC | 7 cut(s) | 313, 358, 772, 950, 1274, 1574, 1744 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 567, 600 |
| BalI | TGGCCA | 1 cut(s) | 629 |
| BanII | GRGCYC | 2 cut(s) | 1586, 1633 |
| Bbv12I | GWGCWC | 1 cut(s) | 595 |
| BbvCI | CCTCAGC | 1 cut(s) | 534 |
| BbvI | GCAGC | 5 cut(s) | 249, 400, 626, 733, 1520 |
| BccI | CCATC | 8 cut(s) | 49, 55, 224, 638, 1120, 1723, 1774, 1802 |
| BceAI | ACGGC | 1 cut(s) | 759 |
| BciT130I | CCWGG | 4 cut(s) | 224, 362, 1108, 1748 |
| BciVI | GTATCC | 2 cut(s) | 547, 1550 |
| BcnI | CCSGG | 1 cut(s) | 493 |
| BcoDI | GTCTC | 3 cut(s) | 250, 1250, 1702 |
| BfaI | CTAG | 3 cut(s) | 159, 828, 1616 |
| BfmI | CTRYAG | 3 cut(s) | 235, 596, 1161 |
| BfuAI | ACCTGC | 1 cut(s) | 1680 |
| BfuI | GTATCC | 2 cut(s) | 547, 1550 |
| BglII | AGATCT | 1 cut(s) | 1837 |
| BisI | GCNGC | 7 cut(s) | 238, 389, 411, 423, 615, 747, 1509 |
| BlpI | GCTNAGC | 1 cut(s) | 737 |
| BlsI | GCNGC | 7 cut(s) | 239, 390, 412, 424, 616, 748, 1510 |
| Bme1390I | CCNGG | 5 cut(s) | 224, 362, 493, 1108, 1748 |
| Bme18I | GGWCC | 7 cut(s) | 313, 358, 772, 950, 1274, 1574, 1744 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1715 |
| BmgT120I | GGNCC | 9 cut(s) | 313, 358, 489, 730, 772, 950, 1274, 1574, 1744 |
| BmiI | GGNNCC | 3 cut(s) | 315, 490, 1276 |
| BmrFI | CCNGG | 5 cut(s) | 224, 362, 493, 1108, 1748 |
| BmrI | ACTGGG | 2 cut(s) | 516, 582 |
| BmsI | GCATC | 1 cut(s) | 1129 |
| BmuI | ACTGGG | 2 cut(s) | 516, 582 |
| BpmI | CTGGAG | 3 cut(s) | 482, 1272, 1302 |
| Bpu10I | CCTNAGC | 1 cut(s) | 534 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 737 |
| Bpu14I | TTCGAA | 2 cut(s) | 483, 712 |
| BpuMI | CCSGG | 1 cut(s) | 493 |
| Bsa29I | ATCGAT | 2 cut(s) | 978, 1026 |
| BsaBI | GATNNNNATC | 1 cut(s) | 289 |
| BsaHI | GRCGYC | 1 cut(s) | 378 |
| BsaJI | CCNNGG | 4 cut(s) | 223, 492, 540, 1577 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 245, 275, 1245, 1275 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 281, 1037, 1283, 1337 |
| Bse1I | ACTGG | 2 cut(s) | 511, 588 |
| Bse3DI | GCAATG | 2 cut(s) | 687, 811 |
| Bse8I | GATNNNNATC | 1 cut(s) | 289 |
| BseBI | CCWGG | 4 cut(s) | 224, 362, 1108, 1748 |
| BseCI | ATCGAT | 2 cut(s) | 978, 1026 |
| BseDI | CCNNGG | 4 cut(s) | 223, 492, 540, 1577 |
| BseGI | GGATG | 6 cut(s) | 47, 179, 216, 517, 550, 1669 |
| BseJI | GATNNNNATC | 1 cut(s) | 289 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 281, 1037, 1283, 1337 |
| BseMI | GCAATG | 2 cut(s) | 687, 811 |
| BseMII | CTCAG | 7 cut(s) | 525, 751, 914, 1430, 1440, 1686, 1848 |
| BseNI | ACTGG | 2 cut(s) | 511, 588 |
| BseRI | GAGGAG | 2 cut(s) | 1299, 1408 |
| BseXI | GCAGC | 5 cut(s) | 249, 400, 626, 733, 1520 |
| BseYI | CCCAGC | 2 cut(s) | 316, 732 |
| Bsh1236I | CGCG | 1 cut(s) | 1158 |
| BshFI | GGCC | 6 cut(s) | 410, 491, 539, 629, 731, 1407 |
| BshVI | ATCGAT | 2 cut(s) | 978, 1026 |
| BsiHKAI | GWGCWC | 1 cut(s) | 595 |
| BsiSI | CCGG | 1 cut(s) | 492 |
| BslFI | GGGAC | 2 cut(s) | 257, 482 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 281, 1037, 1283, 1337 |
| BsmAI | GTCTC | 3 cut(s) | 250, 1250, 1702 |
| BsmBI | CGTCTC | 1 cut(s) | 250 |
| BsmFI | GGGAC | 2 cut(s) | 257, 482 |
| BsmI | GAATGC | 1 cut(s) | 829 |
| BsnI | GGCC | 6 cut(s) | 410, 491, 539, 629, 731, 1407 |
| Bsp119I | TTCGAA | 2 cut(s) | 483, 712 |
| Bsp1286I | GDGCHC | 3 cut(s) | 595, 1586, 1633 |
| Bsp143I | GATC | 8 cut(s) | 369, 525, 903, 1023, 1027, 1327, 1468, 1837 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 737 |
| BspACI | CCGC | 6 cut(s) | 411, 422, 551, 1156, 1738, 1831 |
| BspANI | GGCC | 6 cut(s) | 410, 491, 539, 629, 731, 1407 |
| BspCNI | CTCAG | 7 cut(s) | 526, 750, 913, 1429, 1441, 1687, 1847 |
| BspDI | ATCGAT | 2 cut(s) | 978, 1026 |
| BspFNI | CGCG | 1 cut(s) | 1158 |
| BspLI | GGNNCC | 3 cut(s) | 315, 490, 1276 |
| BspMAI | CTGCAG | 2 cut(s) | 239, 600 |
| BspMI | ACCTGC | 1 cut(s) | 1680 |
| BspPI | GGATC | 5 cut(s) | 377, 533, 1022, 1322, 1476 |
| BspQI | GCTCTTC | 1 cut(s) | 1815 |
| BspT104I | TTCGAA | 2 cut(s) | 483, 712 |
| BsrBI | CCGCTC | 1 cut(s) | 1833 |
| BsrDI | GCAATG | 2 cut(s) | 687, 811 |
| BsrI | ACTGG | 2 cut(s) | 511, 588 |
| BssECI | CCNNGG | 4 cut(s) | 223, 492, 540, 1577 |
| BssMI | GATC | 8 cut(s) | 369, 525, 903, 1023, 1027, 1327, 1468, 1837 |
| BssNAI | GTATAC | 1 cut(s) | 1346 |
| BssNI | GRCGYC | 1 cut(s) | 378 |
| BssT1I | CCWWGG | 1 cut(s) | 1577 |
| Bst1107I | GTATAC | 1 cut(s) | 1346 |
| Bst2UI | CCWGG | 4 cut(s) | 224, 362, 1108, 1748 |
| Bst4CI | ACNGT | 7 cut(s) | 559, 580, 1092, 1261, 1444, 1744, 1774 |
| Bst6I | CTCTTC | 1 cut(s) | 1815 |
| BstACI | GRCGYC | 1 cut(s) | 378 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 806, 1517 |
| BstBI | TTCGAA | 2 cut(s) | 483, 712 |
| BstC8I | GCNNGC | 4 cut(s) | 230, 393, 802, 843 |
| BstDEI | CTNAG | 7 cut(s) | 534, 737, 900, 1416, 1449, 1695, 1834 |
| BstF5I | GGATG | 6 cut(s) | 47, 179, 216, 517, 550, 1669 |
| BstFNI | CGCG | 1 cut(s) | 1158 |
| BstHHI | GCGC | 1 cut(s) | 1160 |
| BstKTI | GATC | 8 cut(s) | 372, 528, 906, 1026, 1030, 1330, 1471, 1840 |
| BstMAI | GTCTC | 3 cut(s) | 250, 1250, 1702 |
| BstMBI | GATC | 8 cut(s) | 369, 525, 903, 1023, 1027, 1327, 1468, 1837 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 234, 419, 755, 806, 937, 1517, 1676 |
| BstNI | CCWGG | 4 cut(s) | 224, 362, 1108, 1748 |
| BstNSI | RCATGY | 1 cut(s) | 1859 |
| BstSCI | CCNGG | 5 cut(s) | 222, 360, 491, 1106, 1746 |
| BstSFI | CTRYAG | 3 cut(s) | 235, 596, 1161 |
| BstUI | CGCG | 1 cut(s) | 1158 |
| BstV1I | GCAGC | 5 cut(s) | 249, 400, 626, 733, 1520 |
| BstX2I | RGATCY | 2 cut(s) | 1468, 1837 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 223 |
| BstYI | RGATCY | 2 cut(s) | 1468, 1837 |
| BstZ17I | GTATAC | 1 cut(s) | 1346 |
| Bsu15I | ATCGAT | 2 cut(s) | 978, 1026 |
| BsuI | GTATCC | 2 cut(s) | 547, 1550 |
| BsuRI | GGCC | 6 cut(s) | 410, 491, 539, 629, 731, 1407 |
| BsuTUI | ATCGAT | 2 cut(s) | 978, 1026 |
| BtgZI | GCGATG | 1 cut(s) | 27 |
| BtsCI | GGATG | 6 cut(s) | 47, 179, 216, 517, 550, 1669 |
| BtsI | GCAGTG | 1 cut(s) | 528 |
| BtsIMutI | CAGTG | 4 cut(s) | 528, 595, 849, 1440 |
| BveI | ACCTGC | 1 cut(s) | 1680 |
| Cac8I | GCNNGC | 4 cut(s) | 230, 393, 802, 843 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1442 |
| CfoI | GCGC | 1 cut(s) | 1160 |
| Cfr13I | GGNCC | 9 cut(s) | 313, 358, 489, 730, 772, 950, 1274, 1574, 1744 |
| ClaI | ATCGAT | 2 cut(s) | 978, 1026 |
| CseI | GACGC | 1 cut(s) | 367 |
| CsiI | ACCWGGT | 1 cut(s) | 1106 |
| Csp6I | GTAC | 1 cut(s) | 584 |
| CviAII | CATG | 6 cut(s) | 443, 672, 1217, 1489, 1726, 1856 |
| CviQI | GTAC | 1 cut(s) | 584 |
| DdeI | CTNAG | 7 cut(s) | 534, 737, 900, 1416, 1449, 1695, 1834 |
| DpnI | GATC | 8 cut(s) | 371, 527, 905, 1025, 1029, 1329, 1470, 1839 |
| DpnII | GATC | 8 cut(s) | 369, 525, 903, 1023, 1027, 1327, 1468, 1837 |
| DraI | TTTAAA | 3 cut(s) | 1152, 1195, 1803 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1715 |
| EaeI | YGGCCR | 1 cut(s) | 627 |
| Eam1104I | CTCTTC | 1 cut(s) | 1815 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1715 |
| EarI | CTCTTC | 1 cut(s) | 1815 |
| Eco130I | CCWWGG | 1 cut(s) | 1577 |
| Eco147I | AGGCCT | 1 cut(s) | 539 |
| Eco24I | GRGCYC | 2 cut(s) | 1586, 1633 |
| Eco32I | GATATC | 2 cut(s) | 603, 982 |
| Eco47I | GGWCC | 7 cut(s) | 313, 358, 772, 950, 1274, 1574, 1744 |
| Eco57I | CTGAAG | 1 cut(s) | 1301 |
| EcoO109I | RGGNCCY | 1 cut(s) | 772 |
| EcoRI | GAATTC | 1 cut(s) | 1207 |
| EcoRII | CCWGG | 4 cut(s) | 222, 360, 1106, 1746 |
| EcoRV | GATATC | 2 cut(s) | 603, 982 |
| EcoT14I | CCWWGG | 1 cut(s) | 1577 |
| EcoT38I | GRGCYC | 2 cut(s) | 1586, 1633 |
| ErhI | CCWWGG | 1 cut(s) | 1577 |
| Esp3I | CGTCTC | 1 cut(s) | 250 |
| FaeI | CATG | 6 cut(s) | 446, 675, 1220, 1492, 1729, 1859 |
| FaqI | GGGAC | 2 cut(s) | 257, 482 |
| FatI | CATG | 6 cut(s) | 442, 671, 1216, 1488, 1725, 1855 |
| FauI | CCCGC | 1 cut(s) | 1838 |
| FblI | GTMKAC | 2 cut(s) | 252, 1345 |
| Fnu4HI | GCNGC | 7 cut(s) | 238, 389, 411, 423, 615, 747, 1509 |
| FokI | GGATG | 6 cut(s) | 34, 166, 203, 524, 557, 1676 |
| FriOI | GRGCYC | 2 cut(s) | 1586, 1633 |
| Fsp4HI | GCNGC | 7 cut(s) | 238, 389, 411, 423, 615, 747, 1509 |
| FspBI | CTAG | 3 cut(s) | 159, 828, 1616 |
| GlaI | GCGC | 1 cut(s) | 1159 |
| GluI | GCNGC | 7 cut(s) | 238, 389, 411, 423, 615, 747, 1509 |
| GsaI | CCCAGC | 2 cut(s) | 320, 736 |
| GsuI | CTGGAG | 3 cut(s) | 482, 1272, 1302 |
| HaeIII | GGCC | 6 cut(s) | 410, 491, 539, 629, 731, 1407 |
| HapII | CCGG | 1 cut(s) | 492 |
| HgaI | GACGC | 1 cut(s) | 367 |
| HhaI | GCGC | 1 cut(s) | 1160 |
| Hin1I | GRCGYC | 1 cut(s) | 378 |
| Hin1II | CATG | 6 cut(s) | 446, 675, 1220, 1492, 1729, 1859 |
| Hin6I | GCGC | 1 cut(s) | 1158 |
| HinP1I | GCGC | 1 cut(s) | 1158 |
| HincII | GTYRAC | 2 cut(s) | 1383, 1863 |
| HindII | GTYRAC | 2 cut(s) | 1383, 1863 |
| HindIII | AAGCTT | 1 cut(s) | 839 |
| HinfI | GANTC | 3 cut(s) | 667, 1132, 1234 |
| HpaII | CCGG | 1 cut(s) | 492 |
| HphI | GGTGA | 4 cut(s) | 676, 713, 1183, 1717 |
| Hpy166II | GTNNAC | 4 cut(s) | 253, 1346, 1383, 1863 |
| Hpy188III | TCNNGA | 7 cut(s) | 159, 461, 1136, 1281, 1418, 1540, 1550 |
| Hpy8I | GTNNAC | 4 cut(s) | 253, 1346, 1383, 1863 |
| Hpy99I | CGWCG | 2 cut(s) | 36, 377 |
| HpyAV | CCTTC | 8 cut(s) | 125, 175, 202, 412, 448, 479, 880, 1547 |
| HpyCH4III | ACNGT | 7 cut(s) | 559, 580, 1092, 1261, 1444, 1744, 1774 |
| HpyCH4IV | ACGT | 1 cut(s) | 323 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 234, 419, 755, 806, 937, 1517, 1676 |
| HpyF3I | CTNAG | 7 cut(s) | 534, 737, 900, 1416, 1449, 1695, 1834 |
| HpySE526I | ACGT | 1 cut(s) | 323 |
| Hsp92I | GRCGYC | 1 cut(s) | 378 |
| Hsp92II | CATG | 6 cut(s) | 446, 675, 1220, 1492, 1729, 1859 |
| HspAI | GCGC | 1 cut(s) | 1158 |
| Kzo9I | GATC | 8 cut(s) | 369, 525, 903, 1023, 1027, 1327, 1468, 1837 |
| LguI | GCTCTTC | 1 cut(s) | 1815 |
| LmnI | GCTCC | 1 cut(s) | 153 |
| Lsp1109I | GCAGC | 5 cut(s) | 249, 400, 626, 733, 1520 |
| LweI | GCATC | 1 cut(s) | 1129 |
| MabI | ACCWGGT | 1 cut(s) | 1106 |
| MaeI | CTAG | 3 cut(s) | 159, 828, 1616 |
| MaeII | ACGT | 1 cut(s) | 323 |
| MaeIII | GTNAC | 2 cut(s) | 1003, 1873 |
| MalI | GATC | 8 cut(s) | 371, 527, 905, 1025, 1029, 1329, 1470, 1839 |
| MbiI | CCGCTC | 1 cut(s) | 1833 |
| MboI | GATC | 8 cut(s) | 369, 525, 903, 1023, 1027, 1327, 1468, 1837 |
| MboII | GAAGA | 4 cut(s) | 889, 1307, 1638, 1832 |
| MflI | RGATCY | 2 cut(s) | 1468, 1837 |
| MhlI | GDGCHC | 3 cut(s) | 595, 1586, 1633 |
| MlsI | TGGCCA | 1 cut(s) | 629 |
| MluNI | TGGCCA | 1 cut(s) | 629 |
| MmeI | TCCRAC | 2 cut(s) | 1024, 1252 |
| Mox20I | TGGCCA | 1 cut(s) | 629 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1773 |
| MscI | TGGCCA | 1 cut(s) | 629 |
| MseI | TTAA | 7 cut(s) | 66, 834, 1151, 1194, 1245, 1655, 1802 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1493 |
| Msp20I | TGGCCA | 1 cut(s) | 629 |
| MspA1I | CMGCKG | 1 cut(s) | 659 |
| MspI | CCGG | 1 cut(s) | 492 |
| MspR9I | CCNGG | 5 cut(s) | 224, 362, 493, 1108, 1748 |
| Mva1269I | GAATGC | 1 cut(s) | 829 |
| MvaI | CCWGG | 4 cut(s) | 224, 362, 1108, 1748 |
| MvnI | CGCG | 1 cut(s) | 1158 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 234, 419, 755, 806, 937, 1517, 1676 |
| NciI | CCSGG | 1 cut(s) | 493 |
| NdeII | GATC | 8 cut(s) | 369, 525, 903, 1023, 1027, 1327, 1468, 1837 |
| NlaIII | CATG | 6 cut(s) | 446, 675, 1220, 1492, 1729, 1859 |
| NlaIV | GGNNCC | 3 cut(s) | 315, 490, 1276 |
| NmuCI | GTSAC | 1 cut(s) | 1873 |
| NspI | RCATGY | 1 cut(s) | 1859 |
| NspV | TTCGAA | 2 cut(s) | 483, 712 |
| PceI | AGGCCT | 1 cut(s) | 539 |
| PciSI | GCTCTTC | 1 cut(s) | 1815 |
| PctI | GAATGC | 1 cut(s) | 829 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1773 |
| PfeI | GAWTC | 3 cut(s) | 667, 1132, 1234 |
| PkrI | GCNGC | 7 cut(s) | 239, 390, 412, 424, 616, 748, 1510 |
| PpuMI | RGGWCCY | 1 cut(s) | 772 |
| PshBI | ATTAAT | 1 cut(s) | 1655 |
| PsiI | TTATAA | 1 cut(s) | 1304 |
| Psp5II | RGGWCCY | 1 cut(s) | 772 |
| Psp6I | CCWGG | 4 cut(s) | 222, 360, 1106, 1746 |
| PspFI | CCCAGC | 2 cut(s) | 316, 732 |
| PspGI | CCWGG | 4 cut(s) | 222, 360, 1106, 1746 |
| PspN4I | GGNNCC | 3 cut(s) | 315, 490, 1276 |
| PspPI | GGNCC | 9 cut(s) | 313, 358, 489, 730, 772, 950, 1274, 1574, 1744 |
| PspPPI | RGGWCCY | 1 cut(s) | 772 |
| PstI | CTGCAG | 2 cut(s) | 239, 600 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1442 |
| PsuI | RGATCY | 2 cut(s) | 1468, 1837 |
| PvuII | CAGCTG | 1 cut(s) | 659 |
| RsaI | GTAC | 1 cut(s) | 585 |
| RsaNI | GTAC | 1 cut(s) | 584 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1493 |
| SapI | GCTCTTC | 1 cut(s) | 1815 |
| SaqAI | TTAA | 7 cut(s) | 66, 834, 1151, 1194, 1245, 1655, 1802 |
| SatI | GCNGC | 7 cut(s) | 238, 389, 411, 423, 615, 747, 1509 |
| Sau3AI | GATC | 8 cut(s) | 369, 525, 903, 1023, 1027, 1327, 1468, 1837 |
| Sau96I | GGNCC | 9 cut(s) | 313, 358, 489, 730, 772, 950, 1274, 1574, 1744 |
| ScrFI | CCNGG | 5 cut(s) | 224, 362, 493, 1108, 1748 |
| SduI | GDGCHC | 3 cut(s) | 595, 1586, 1633 |
| SexAI | ACCWGGT | 1 cut(s) | 1106 |
| SfaNI | GCATC | 1 cut(s) | 1129 |
| SfcI | CTRYAG | 3 cut(s) | 235, 596, 1161 |
| SfuI | TTCGAA | 2 cut(s) | 483, 712 |
| SinI | GGWCC | 7 cut(s) | 313, 358, 772, 950, 1274, 1574, 1744 |
| SmiI | ATTTAAAT | 1 cut(s) | 1195 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1493 |
| SseBI | AGGCCT | 1 cut(s) | 539 |
| SsiI | CCGC | 6 cut(s) | 411, 422, 551, 1156, 1738, 1831 |
| SspI | AATATT | 2 cut(s) | 1402, 1653 |
| SspMI | CTAG | 3 cut(s) | 159, 828, 1616 |
| StuI | AGGCCT | 1 cut(s) | 539 |
| StyD4I | CCNGG | 5 cut(s) | 222, 360, 491, 1106, 1746 |
| StyI | CCWWGG | 1 cut(s) | 1577 |
| SwaI | ATTTAAAT | 1 cut(s) | 1195 |
| TaaI | ACNGT | 7 cut(s) | 559, 580, 1092, 1261, 1444, 1744, 1774 |
| TaiI | ACGT | 1 cut(s) | 326 |
| TaqI | TCGA | 5 cut(s) | 483, 712, 978, 1026, 1719 |
| TauI | GCSGC | 2 cut(s) | 413, 425 |
| TfiI | GAWTC | 3 cut(s) | 667, 1132, 1234 |
| Tru1I | TTAA | 7 cut(s) | 66, 834, 1151, 1194, 1245, 1655, 1802 |
| Tru9I | TTAA | 7 cut(s) | 66, 834, 1151, 1194, 1245, 1655, 1802 |
| TscAI | CASTG | 4 cut(s) | 535, 595, 856, 1447 |
| TseFI | GTSAC | 1 cut(s) | 1873 |
| TseI | GCWGC | 5 cut(s) | 237, 388, 614, 746, 1508 |
| Tsp45I | GTSAC | 1 cut(s) | 1873 |
| TspDTI | ATGAA | 5 cut(s) | 184, 431, 899, 987, 1680 |
| TspGWI | ACGGA | 2 cut(s) | 20, 238 |
| TspRI | CASTG | 4 cut(s) | 535, 595, 856, 1447 |
| VpaK11BI | GGWCC | 7 cut(s) | 313, 358, 772, 950, 1274, 1574, 1744 |
| VspI | ATTAAT | 1 cut(s) | 1655 |
| XapI | RAATTY | 3 cut(s) | 154, 1175, 1207 |
| XbaI | TCTAGA | 1 cut(s) | 158 |
| XceI | RCATGY | 1 cut(s) | 1859 |
| XmiI | GTMKAC | 2 cut(s) | 252, 1345 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1773 |
| XspI | CTAG | 3 cut(s) | 159, 828, 1616 |