Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000452

Physical Location & Seq

Genomic Coordinates Reverse (-)

26820761 .. 26823893

Gene Structure 3133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0256200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCCCGAATGGGTAGGAAAGTTTGGAACTTTTGGGGTGTTAAATGCCTTTTGCTTTCTGGGTTTTTTAGACTCTGCATGCAGTCCCAGGCTCCCAGCGTTGCCTCACCTTCCCCGTCATACTCCGGCGAGCCATTAAAACGTACTCAGGAGTCAGCGGAGGTAATCATGTTCGAGTGCAACGTTGTTATATATAAGTTTGTGCAGGAACTTCACTTCTTTGTGACTGGAGGTGACGATGAAAATGAACTCATTTTAGCAACTCTACTTCAGGGATTCTTTGATGCAGAAAAATGTCGACAAAAGGGAGGCATTAGAGCACCTGGATCTCATACTCCTATAGTTCAATGCTTTGATGTGATCATTGATCAAGGATCTGCTCATTTTTTACCCTTTGCAACTGTTAAAGCAGAAGAGATTTCGTTAACTTTAATCAACTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

147

Amino Acids

16.39

Weight (kDa)

5.89

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000452)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	442
AccI	GTMKAC	1 cut(s)	298
AciI	CCGC	1 cut(s)	158
AclI	AACGTT	1 cut(s)	183
AclWI	GGATC	2 cut(s)	334, 382
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	1 cut(s)	145
AgsI	TTSAA	1 cut(s)	347
AjnI	CCWGG	2 cut(s)	87, 322
Alw21I	GWGCWC	1 cut(s)	322
AlwI	GGATC	2 cut(s)	334, 382
AoxI	GGCC	1 cut(s)	3
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	99, 245
Bbv12I	GWGCWC	1 cut(s)	322
BciT130I	CCWGG	2 cut(s)	89, 324
BclI	TGATCA	2 cut(s)	360, 367
BfmI	CTRYAG	1 cut(s)	339
Bme1390I	CCNGG	2 cut(s)	89, 324
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	2 cut(s)	89, 324
BmsI	GCATC	1 cut(s)	274
BpmI	CTGGAG	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	232
BseBI	CCWGG	2 cut(s)	89, 324
BseDI	CCNNGG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	232
BseYI	CCCAGC	1 cut(s)	95
BsgI	GTGCAG	1 cut(s)	224
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	4 cut(s)	326, 360, 367, 374
BspACI	CCGC	1 cut(s)	158
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	93
BspPI	GGATC	2 cut(s)	334, 382
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	4 cut(s)	326, 360, 367, 374
Bst2UI	CCWGG	2 cut(s)	89, 324
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	1 cut(s)	408
BstC8I	GCNNGC	2 cut(s)	80, 131
BstDEI	CTNAG	1 cut(s)	147
BstKTI	GATC	4 cut(s)	329, 363, 370, 377
BstMBI	GATC	4 cut(s)	326, 360, 367, 374
BstNI	CCWGG	2 cut(s)	89, 324
BstNSI	RCATGY	1 cut(s)	82
BstSCI	CCNGG	2 cut(s)	87, 322
BstSFI	CTRYAG	1 cut(s)	339
BstX2I	RGATCY	2 cut(s)	326, 374
BstYI	RGATCY	2 cut(s)	326, 374
BsuRI	GGCC	1 cut(s)	5
Cac8I	GCNNGC	2 cut(s)	80, 131
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	2 cut(s)	79, 169
CviJI	RGCY	3 cut(s)	5, 92, 133
CviKI_1	RGCY	3 cut(s)	5, 92, 133
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	4 cut(s)	328, 362, 369, 376
DpnII	GATC	4 cut(s)	326, 360, 367, 374
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	87, 322
FaeI	CATG	2 cut(s)	82, 172
FaiI	YATR	9 cut(s)	80, 121, 170, 191, 193, 195, 333, 341, 442
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	2 cut(s)	78, 168
FbaI	TGATCA	2 cut(s)	360, 367
FblI	GTMKAC	1 cut(s)	298
GsaI	CCCAGC	1 cut(s)	99
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	2 cut(s)	82, 172
HincII	GTYRAC	2 cut(s)	299, 426
HindII	GTYRAC	2 cut(s)	299, 426
HinfI	GANTC	3 cut(s)	72, 152, 276
HpaI	GTTAAC	1 cut(s)	426
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	2 cut(s)	99, 245
Hpy166II	GTNNAC	2 cut(s)	299, 426
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	2 cut(s)	299, 426
HpyAV	CCTTC	1 cut(s)	120
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	2 cut(s)	142, 183
HpyCH4V	TGCA	6 cut(s)	78, 82, 180, 205, 287, 398
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	2 cut(s)	142, 183
Hsp92II	CATG	2 cut(s)	82, 172
Ksp22I	TGATCA	2 cut(s)	360, 367
KspAI	GTTAAC	1 cut(s)	426
Kzo9I	GATC	4 cut(s)	326, 360, 367, 374
LmnI	GCTCC	1 cut(s)	97
LweI	GCATC	1 cut(s)	274
MaeII	ACGT	2 cut(s)	142, 183
MaeIII	GTNAC	2 cut(s)	223, 233
MalI	GATC	4 cut(s)	328, 362, 369, 376
MboI	GATC	4 cut(s)	326, 360, 367, 374
MboII	GAAGA	1 cut(s)	425
MflI	RGATCY	2 cut(s)	326, 374
MhlI	GDGCHC	1 cut(s)	322
MlyI	GAGTC	2 cut(s)	66, 161
MnlI	CCTC	4 cut(s)	115, 154, 224, 302
MseI	TTAA	5 cut(s)	42, 137, 405, 425, 431
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	89, 324
MvaI	CCWGG	2 cut(s)	89, 324
NdeII	GATC	4 cut(s)	326, 360, 367, 374
NlaIII	CATG	2 cut(s)	82, 172
NlaIV	GGNNCC	1 cut(s)	93
NmuCI	GTSAC	2 cut(s)	223, 233
NspI	RCATGY	1 cut(s)	82
PaeI	GCATGC	1 cut(s)	82
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	276
PleI	GAGTC	2 cut(s)	66, 160
PpsI	GAGTC	2 cut(s)	66, 160
PsiI	TTATAA	1 cut(s)	442
Psp1406I	AACGTT	1 cut(s)	183
Psp6I	CCWGG	2 cut(s)	87, 322
PspFI	CCCAGC	1 cut(s)	95
PspGI	CCWGG	2 cut(s)	87, 322
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	2 cut(s)	326, 374
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SalI	GTCGAC	1 cut(s)	297
SaqAI	TTAA	5 cut(s)	42, 137, 405, 425, 431
Sau3AI	GATC	4 cut(s)	326, 360, 367, 374
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	66, 161
ScrFI	CCNGG	2 cut(s)	89, 324
SduI	GDGCHC	1 cut(s)	322
SetI	ASST	6 cut(s)	112, 145, 165, 186, 235, 325
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	339
SphI	GCATGC	1 cut(s)	82
SsiI	CCGC	1 cut(s)	158
StyD4I	CCNGG	2 cut(s)	87, 322
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	2 cut(s)	145, 186
TaqI	TCGA	2 cut(s)	174, 298
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	5 cut(s)	42, 137, 405, 425, 431
Tru9I	TTAA	5 cut(s)	42, 137, 405, 425, 431
TseFI	GTSAC	2 cut(s)	223, 233
Tsp45I	GTSAC	2 cut(s)	223, 233
TspDTI	ATGAA	2 cut(s)	255, 261
XceI	RCATGY	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.