Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Plus-3 | PF03126 | 230 - 332 | 1.4e-09 | Plus-3 domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 397 |
| AclWI | GGATC | 4 cut(s) | 51, 390, 734, 747 |
| AcoI | YGGCCR | 1 cut(s) | 1003 |
| AcsI | RAATTY | 1 cut(s) | 894 |
| AcuI | CTGAAG | 1 cut(s) | 432 |
| AfaI | GTAC | 1 cut(s) | 765 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 45, 939, 964 |
| AgsI | TTSAA | 3 cut(s) | 406, 899, 1141 |
| AjnI | CCWGG | 1 cut(s) | 798 |
| AluBI | AGCT | 8 cut(s) | 309, 606, 663, 697, 717, 1033, 1082, 1105 |
| AluI | AGCT | 8 cut(s) | 309, 606, 663, 697, 717, 1033, 1082, 1105 |
| Alw21I | GWGCWC | 2 cut(s) | 200, 608 |
| AlwI | GGATC | 4 cut(s) | 51, 390, 734, 747 |
| AoxI | GGCC | 1 cut(s) | 1003 |
| ApeKI | GCWGC | 3 cut(s) | 57, 309, 1129 |
| ApoI | RAATTY | 1 cut(s) | 894 |
| AspA2I | CCTAGG | 1 cut(s) | 256 |
| AsuHPI | GGTGA | 3 cut(s) | 518, 790, 893 |
| AvrII | CCTAGG | 1 cut(s) | 256 |
| BalI | TGGCCA | 1 cut(s) | 1005 |
| BamHI | GGATCC | 1 cut(s) | 739 |
| BanII | GRGCYC | 1 cut(s) | 608 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 686, 718 |
| BbsI | GAAGAC | 1 cut(s) | 33 |
| Bbv12I | GWGCWC | 2 cut(s) | 200, 608 |
| BbvI | GCAGC | 3 cut(s) | 44, 296, 1141 |
| BccI | CCATC | 4 cut(s) | 59, 995, 1014, 1126 |
| BciT130I | CCWGG | 1 cut(s) | 800 |
| BclI | TGATCA | 1 cut(s) | 745 |
| BfaI | CTAG | 3 cut(s) | 257, 648, 1109 |
| BfmI | CTRYAG | 1 cut(s) | 1020 |
| BglII | AGATCT | 1 cut(s) | 1174 |
| BisI | GCNGC | 4 cut(s) | 58, 310, 398, 1130 |
| BlnI | CCTAGG | 1 cut(s) | 256 |
| BlsI | GCNGC | 4 cut(s) | 59, 311, 399, 1131 |
| Bme1390I | CCNGG | 1 cut(s) | 800 |
| BmiI | GGNNCC | 1 cut(s) | 741 |
| BmrFI | CCNGG | 1 cut(s) | 800 |
| BmrI | ACTGGG | 1 cut(s) | 776 |
| BmsI | GCATC | 5 cut(s) | 248, 632, 680, 1066, 1137 |
| BmuI | ACTGGG | 1 cut(s) | 776 |
| BpiI | GAAGAC | 1 cut(s) | 33 |
| BpmI | CTGGAG | 2 cut(s) | 743, 755 |
| BpuEI | CTTGAG | 1 cut(s) | 193 |
| BsaBI | GATNNNNATC | 2 cut(s) | 744, 1005 |
| BsaJI | CCNNGG | 4 cut(s) | 39, 147, 256, 798 |
| BsaWI | WCCGGW | 1 cut(s) | 1184 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 63, 93 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 45, 939, 964 |
| Bse1I | ACTGG | 3 cut(s) | 726, 738, 771 |
| Bse3DI | GCAATG | 1 cut(s) | 1158 |
| Bse8I | GATNNNNATC | 2 cut(s) | 744, 1005 |
| BseBI | CCWGG | 1 cut(s) | 800 |
| BseDI | CCNNGG | 4 cut(s) | 39, 147, 256, 798 |
| BseGI | GGATG | 2 cut(s) | 115, 562 |
| BseJI | GATNNNNATC | 2 cut(s) | 744, 1005 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 45, 939, 964 |
| BseMI | GCAATG | 1 cut(s) | 1158 |
| BseMII | CTCAG | 3 cut(s) | 357, 675, 882 |
| BseNI | ACTGG | 3 cut(s) | 726, 738, 771 |
| BseRI | GAGGAG | 1 cut(s) | 35 |
| BseXI | GCAGC | 3 cut(s) | 44, 296, 1141 |
| BshFI | GGCC | 1 cut(s) | 1005 |
| BsiHKAI | GWGCWC | 2 cut(s) | 200, 608 |
| BsiSI | CCGG | 1 cut(s) | 1185 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 45, 939, 964 |
| BsmI | GAATGC | 1 cut(s) | 181 |
| BsnI | GGCC | 1 cut(s) | 1005 |
| Bsp1286I | GDGCHC | 2 cut(s) | 200, 608 |
| Bsp143I | GATC | 6 cut(s) | 43, 382, 420, 739, 745, 1174 |
| Bsp19I | CCATGG | 1 cut(s) | 147 |
| BspACI | CCGC | 1 cut(s) | 397 |
| BspANI | GGCC | 1 cut(s) | 1005 |
| BspCNI | CTCAG | 3 cut(s) | 356, 676, 881 |
| BspLI | GGNNCC | 1 cut(s) | 741 |
| BspPI | GGATC | 4 cut(s) | 51, 390, 734, 747 |
| BspQI | GCTCTTC | 2 cut(s) | 5, 707 |
| BsrDI | GCAATG | 1 cut(s) | 1158 |
| BsrI | ACTGG | 3 cut(s) | 726, 738, 771 |
| BssECI | CCNNGG | 4 cut(s) | 39, 147, 256, 798 |
| BssMI | GATC | 6 cut(s) | 43, 382, 420, 739, 745, 1174 |
| BssT1I | CCWWGG | 2 cut(s) | 147, 256 |
| Bst2UI | CCWGG | 1 cut(s) | 800 |
| Bst4CI | ACNGT | 2 cut(s) | 827, 1024 |
| Bst6I | CTCTTC | 5 cut(s) | 5, 587, 592, 707, 963 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 309 |
| BstDEI | CTNAG | 5 cut(s) | 343, 684, 868, 963, 1071 |
| BstDSI | CCRYGG | 1 cut(s) | 147 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 962 |
| BstF5I | GGATG | 2 cut(s) | 115, 562 |
| BstKTI | GATC | 6 cut(s) | 46, 385, 423, 742, 748, 1177 |
| BstMBI | GATC | 6 cut(s) | 43, 382, 420, 739, 745, 1174 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 57, 309 |
| BstNI | CCWGG | 1 cut(s) | 800 |
| BstNSI | RCATGY | 2 cut(s) | 239, 1079 |
| BstSCI | CCNGG | 1 cut(s) | 798 |
| BstSFI | CTRYAG | 1 cut(s) | 1020 |
| BstV1I | GCAGC | 3 cut(s) | 44, 296, 1141 |
| BstV2I | GAAGAC | 1 cut(s) | 33 |
| BstX2I | RGATCY | 2 cut(s) | 739, 1174 |
| BstYI | RGATCY | 2 cut(s) | 739, 1174 |
| BsuRI | GGCC | 1 cut(s) | 1005 |
| BtgI | CCRYGG | 1 cut(s) | 147 |
| BtsCI | GGATG | 2 cut(s) | 115, 562 |
| BtsI | GCAGTG | 1 cut(s) | 895 |
| BtsIMutI | CAGTG | 1 cut(s) | 895 |
| Csp6I | GTAC | 1 cut(s) | 764 |
| CviAII | CATG | 5 cut(s) | 148, 236, 243, 581, 1076 |
| CviQI | GTAC | 1 cut(s) | 764 |
| DdeI | CTNAG | 5 cut(s) | 343, 684, 868, 963, 1071 |
| DpnI | GATC | 6 cut(s) | 45, 384, 422, 741, 747, 1176 |
| DpnII | GATC | 6 cut(s) | 43, 382, 420, 739, 745, 1174 |
| EaeI | YGGCCR | 1 cut(s) | 1003 |
| Eam1104I | CTCTTC | 5 cut(s) | 5, 587, 592, 707, 963 |
| EarI | CTCTTC | 5 cut(s) | 5, 587, 592, 707, 963 |
| Ecl136II | GAGCTC | 1 cut(s) | 606 |
| Eco130I | CCWWGG | 2 cut(s) | 147, 256 |
| Eco24I | GRGCYC | 1 cut(s) | 608 |
| Eco32I | GATATC | 1 cut(s) | 928 |
| Eco53kI | GAGCTC | 1 cut(s) | 606 |
| Eco57I | CTGAAG | 1 cut(s) | 432 |
| EcoICRI | GAGCTC | 1 cut(s) | 606 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 962 |
| EcoRII | CCWGG | 1 cut(s) | 798 |
| EcoRV | GATATC | 1 cut(s) | 928 |
| EcoT14I | CCWWGG | 2 cut(s) | 147, 256 |
| EcoT22I | ATGCAT | 1 cut(s) | 241 |
| EcoT38I | GRGCYC | 1 cut(s) | 608 |
| ErhI | CCWWGG | 2 cut(s) | 147, 256 |
| FaeI | CATG | 5 cut(s) | 151, 239, 246, 584, 1079 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 86, 118, 701, 733 |
| FatI | CATG | 5 cut(s) | 147, 235, 242, 580, 1075 |
| FbaI | TGATCA | 1 cut(s) | 745 |
| Fnu4HI | GCNGC | 4 cut(s) | 58, 310, 398, 1130 |
| FokI | GGATG | 2 cut(s) | 102, 569 |
| FriOI | GRGCYC | 1 cut(s) | 608 |
| Fsp4HI | GCNGC | 4 cut(s) | 58, 310, 398, 1130 |
| FspBI | CTAG | 3 cut(s) | 257, 648, 1109 |
| GluI | GCNGC | 4 cut(s) | 58, 310, 398, 1130 |
| GsuI | CTGGAG | 2 cut(s) | 743, 755 |
| HaeIII | GGCC | 1 cut(s) | 1005 |
| HapII | CCGG | 1 cut(s) | 1185 |
| Hin1II | CATG | 5 cut(s) | 151, 239, 246, 584, 1079 |
| HindIII | AAGCTT | 1 cut(s) | 695 |
| HinfI | GANTC | 7 cut(s) | 35, 152, 322, 402, 643, 651, 1181 |
| HpaII | CCGG | 1 cut(s) | 1185 |
| HphI | GGTGA | 3 cut(s) | 518, 790, 893 |
| Hpy166II | GTNNAC | 3 cut(s) | 233, 703, 814 |
| Hpy188III | TCNNGA | 8 cut(s) | 119, 156, 267, 386, 683, 743, 1061, 1178 |
| Hpy8I | GTNNAC | 3 cut(s) | 233, 703, 814 |
| Hpy99I | CGWCG | 1 cut(s) | 539 |
| HpyAV | CCTTC | 2 cut(s) | 431, 1036 |
| HpyCH4III | ACNGT | 2 cut(s) | 827, 1024 |
| HpyCH4V | TGCA | 6 cut(s) | 239, 275, 303, 671, 904, 1057 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 57, 309 |
| HpyF3I | CTNAG | 5 cut(s) | 343, 684, 868, 963, 1071 |
| Hsp92II | CATG | 5 cut(s) | 151, 239, 246, 584, 1079 |
| Ksp22I | TGATCA | 1 cut(s) | 745 |
| Kzo9I | GATC | 6 cut(s) | 43, 382, 420, 739, 745, 1174 |
| LguI | GCTCTTC | 2 cut(s) | 5, 707 |
| LmnI | GCTCC | 1 cut(s) | 577 |
| Lsp1109I | GCAGC | 3 cut(s) | 44, 296, 1141 |
| LweI | GCATC | 5 cut(s) | 248, 632, 680, 1066, 1137 |
| MaeI | CTAG | 3 cut(s) | 257, 648, 1109 |
| MaeIII | GTNAC | 2 cut(s) | 512, 729 |
| MalI | GATC | 6 cut(s) | 45, 384, 422, 741, 747, 1176 |
| MboI | GATC | 6 cut(s) | 43, 382, 420, 739, 745, 1174 |
| MflI | RGATCY | 2 cut(s) | 739, 1174 |
| MhlI | GDGCHC | 2 cut(s) | 200, 608 |
| MlsI | TGGCCA | 1 cut(s) | 1005 |
| MluCI | AATT | 5 cut(s) | 97, 392, 572, 894, 913 |
| MluNI | TGGCCA | 1 cut(s) | 1005 |
| MlyI | GAGTC | 2 cut(s) | 146, 652 |
| Mox20I | TGGCCA | 1 cut(s) | 1005 |
| Mph1103I | ATGCAT | 1 cut(s) | 241 |
| MscI | TGGCCA | 1 cut(s) | 1005 |
| MseI | TTAA | 3 cut(s) | 104, 849, 983 |
| MslI | CAYNNNNRTG | 2 cut(s) | 186, 504 |
| Msp20I | TGGCCA | 1 cut(s) | 1005 |
| MspI | CCGG | 1 cut(s) | 1185 |
| MspR9I | CCNGG | 1 cut(s) | 800 |
| Mva1269I | GAATGC | 1 cut(s) | 181 |
| MvaI | CCWGG | 1 cut(s) | 800 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 57, 309 |
| NcoI | CCATGG | 1 cut(s) | 147 |
| NdeII | GATC | 6 cut(s) | 43, 382, 420, 739, 745, 1174 |
| NlaIII | CATG | 5 cut(s) | 151, 239, 246, 584, 1079 |
| NlaIV | GGNNCC | 1 cut(s) | 741 |
| NmeAIII | GCCGAG | 1 cut(s) | 919 |
| NmuCI | GTSAC | 1 cut(s) | 512 |
| NsiI | ATGCAT | 1 cut(s) | 241 |
| NspI | RCATGY | 2 cut(s) | 239, 1079 |
| PciSI | GCTCTTC | 2 cut(s) | 5, 707 |
| PctI | GAATGC | 1 cut(s) | 181 |
| PfeI | GAWTC | 5 cut(s) | 35, 322, 402, 651, 1181 |
| PkrI | GCNGC | 4 cut(s) | 59, 311, 399, 1131 |
| PleI | GAGTC | 2 cut(s) | 146, 651 |
| PpsI | GAGTC | 2 cut(s) | 146, 651 |
| Psp124BI | GAGCTC | 1 cut(s) | 608 |
| Psp6I | CCWGG | 1 cut(s) | 798 |
| PspGI | CCWGG | 1 cut(s) | 798 |
| PspN4I | GGNNCC | 1 cut(s) | 741 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 806, 838 |
| PsuI | RGATCY | 2 cut(s) | 739, 1174 |
| RsaI | GTAC | 1 cut(s) | 765 |
| RsaNI | GTAC | 1 cut(s) | 764 |
| RseI | CAYNNNNRTG | 2 cut(s) | 186, 504 |
| SacI | GAGCTC | 1 cut(s) | 608 |
| SapI | GCTCTTC | 2 cut(s) | 5, 707 |
| SaqAI | TTAA | 3 cut(s) | 104, 849, 983 |
| SatI | GCNGC | 4 cut(s) | 58, 310, 398, 1130 |
| Sau3AI | GATC | 6 cut(s) | 43, 382, 420, 739, 745, 1174 |
| SchI | GAGTC | 2 cut(s) | 146, 652 |
| ScrFI | CCNGG | 1 cut(s) | 800 |
| SduI | GDGCHC | 2 cut(s) | 200, 608 |
| SfaNI | GCATC | 5 cut(s) | 248, 632, 680, 1066, 1137 |
| SfcI | CTRYAG | 1 cut(s) | 1020 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 186, 504 |
| SmlI | CTYRAG | 1 cut(s) | 208 |
| SmoI | CTYRAG | 1 cut(s) | 208 |
| Sse9I | AATT | 5 cut(s) | 97, 392, 572, 894, 913 |
| SsiI | CCGC | 1 cut(s) | 397 |
| SspI | AATATT | 1 cut(s) | 413 |
| SspMI | CTAG | 3 cut(s) | 257, 648, 1109 |
| SstI | GAGCTC | 1 cut(s) | 608 |
| StyD4I | CCNGG | 1 cut(s) | 798 |
| StyI | CCWWGG | 2 cut(s) | 147, 256 |
| TaaI | ACNGT | 2 cut(s) | 827, 1024 |
| TaqI | TCGA | 1 cut(s) | 378 |
| TasI | AATT | 5 cut(s) | 97, 392, 572, 894, 913 |
| TauI | GCSGC | 1 cut(s) | 400 |
| TfiI | GAWTC | 5 cut(s) | 35, 322, 402, 651, 1181 |
| Tru1I | TTAA | 3 cut(s) | 104, 849, 983 |
| Tru9I | TTAA | 3 cut(s) | 104, 849, 983 |
| TscAI | CASTG | 1 cut(s) | 895 |
| TseFI | GTSAC | 1 cut(s) | 512 |
| TseI | GCWGC | 3 cut(s) | 57, 309, 1129 |
| Tsp45I | GTSAC | 1 cut(s) | 512 |
| TspDTI | ATGAA | 7 cut(s) | 20, 405, 573, 597, 645, 707, 1182 |
| TspRI | CASTG | 1 cut(s) | 895 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 962 |
| XapI | RAATTY | 1 cut(s) | 894 |
| XceI | RCATGY | 2 cut(s) | 239, 1079 |
| XmaJI | CCTAGG | 1 cut(s) | 256 |
| XspI | CTAG | 3 cut(s) | 257, 648, 1109 |
| Zsp2I | ATGCAT | 1 cut(s) | 241 |