Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| peroxidase | PF00141 | 18 - 224 | 4e-50 | Peroxidase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 18, 191 |
| AclWI | GGATC | 1 cut(s) | 814 |
| AcsI | RAATTY | 1 cut(s) | 363 |
| AcuI | CTGAAG | 1 cut(s) | 563 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfaI | GTAC | 2 cut(s) | 130, 284 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 377 |
| AgeI | ACCGGT | 1 cut(s) | 152 |
| AgsI | TTSAA | 2 cut(s) | 217, 360 |
| AjnI | CCWGG | 2 cut(s) | 343, 822 |
| AluBI | AGCT | 6 cut(s) | 224, 289, 620, 658, 724, 842 |
| AluI | AGCT | 6 cut(s) | 224, 289, 620, 658, 724, 842 |
| Alw21I | GWGCWC | 2 cut(s) | 70, 409 |
| Alw44I | GTGCAC | 1 cut(s) | 405 |
| AlwI | GGATC | 1 cut(s) | 814 |
| AoxI | GGCC | 2 cut(s) | 158, 322 |
| ApaLI | GTGCAC | 1 cut(s) | 405 |
| ApeKI | GCWGC | 1 cut(s) | 809 |
| ApoI | RAATTY | 1 cut(s) | 363 |
| AsiGI | ACCGGT | 1 cut(s) | 152 |
| AspLEI | GCGC | 2 cut(s) | 92, 788 |
| AspS9I | GGNCC | 3 cut(s) | 158, 323, 521 |
| AvaII | GGWCC | 1 cut(s) | 521 |
| BaeGI | GKGCMC | 2 cut(s) | 409, 496 |
| BanII | GRGCYC | 1 cut(s) | 478 |
| BbsI | GAAGAC | 3 cut(s) | 149, 155, 388 |
| Bbv12I | GWGCWC | 2 cut(s) | 70, 409 |
| BbvI | GCAGC | 1 cut(s) | 796 |
| BccI | CCATC | 2 cut(s) | 512, 616 |
| BceAI | ACGGC | 1 cut(s) | 39 |
| BciT130I | CCWGG | 2 cut(s) | 345, 824 |
| BfaI | CTAG | 1 cut(s) | 110 |
| BglII | AGATCT | 1 cut(s) | 506 |
| BisI | GCNGC | 1 cut(s) | 810 |
| BlsI | GCNGC | 1 cut(s) | 811 |
| Bme1390I | CCNGG | 2 cut(s) | 345, 824 |
| Bme18I | GGWCC | 1 cut(s) | 521 |
| BmgT120I | GGNCC | 3 cut(s) | 158, 323, 521 |
| BmiI | GGNNCC | 3 cut(s) | 169, 325, 537 |
| BmrFI | CCNGG | 2 cut(s) | 345, 824 |
| BmsI | GCATC | 5 cut(s) | 112, 127, 265, 382, 622 |
| BpiI | GAAGAC | 3 cut(s) | 149, 155, 388 |
| BpmI | CTGGAG | 1 cut(s) | 339 |
| Bsa29I | ATCGAT | 1 cut(s) | 42 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaJI | CCNNGG | 3 cut(s) | 260, 524, 823 |
| BsaWI | WCCGGW | 1 cut(s) | 152 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 786, 816 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 377 |
| Bse118I | RCCGGY | 2 cut(s) | 10, 152 |
| Bse1I | ACTGG | 2 cut(s) | 78, 322 |
| BseBI | CCWGG | 2 cut(s) | 345, 824 |
| BseCI | ATCGAT | 1 cut(s) | 42 |
| BseDI | CCNNGG | 3 cut(s) | 260, 524, 823 |
| BseGI | GGATG | 3 cut(s) | 256, 496, 676 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 377 |
| BseMII | CTCAG | 4 cut(s) | 407, 545, 627, 711 |
| BseNI | ACTGG | 2 cut(s) | 78, 322 |
| BseRI | GAGGAG | 1 cut(s) | 689 |
| BseSI | GKGCMC | 2 cut(s) | 409, 496 |
| BseXI | GCAGC | 1 cut(s) | 796 |
| BseYI | CCCAGC | 1 cut(s) | 484 |
| Bsh1285I | CGRYCG | 1 cut(s) | 15 |
| BshFI | GGCC | 2 cut(s) | 160, 324 |
| BshTI | ACCGGT | 1 cut(s) | 152 |
| BshVI | ATCGAT | 1 cut(s) | 42 |
| BsiEI | CGRYCG | 1 cut(s) | 15 |
| BsiHKAI | GWGCWC | 2 cut(s) | 70, 409 |
| BsiSI | CCGG | 2 cut(s) | 11, 153 |
| BslFI | GGGAC | 1 cut(s) | 434 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 377 |
| BsmFI | GGGAC | 1 cut(s) | 434 |
| BsnI | GGCC | 2 cut(s) | 160, 324 |
| Bsp1286I | GDGCHC | 4 cut(s) | 70, 409, 478, 496 |
| Bsp143I | GATC | 4 cut(s) | 58, 96, 506, 819 |
| BspANI | GGCC | 2 cut(s) | 160, 324 |
| BspCNI | CTCAG | 4 cut(s) | 408, 544, 628, 712 |
| BspDI | ATCGAT | 1 cut(s) | 42 |
| BspLI | GGNNCC | 3 cut(s) | 169, 325, 537 |
| BspPI | GGATC | 1 cut(s) | 814 |
| BsrFI | RCCGGY | 2 cut(s) | 10, 152 |
| BsrI | ACTGG | 2 cut(s) | 78, 322 |
| BssAI | RCCGGY | 2 cut(s) | 10, 152 |
| BssECI | CCNNGG | 3 cut(s) | 260, 524, 823 |
| BssMI | GATC | 4 cut(s) | 58, 96, 506, 819 |
| BssNAI | GTATAC | 1 cut(s) | 192 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssT1I | CCWWGG | 2 cut(s) | 260, 524 |
| Bst1107I | GTATAC | 1 cut(s) | 192 |
| Bst2UI | CCWGG | 2 cut(s) | 345, 824 |
| Bst4CI | ACNGT | 1 cut(s) | 167 |
| Bst6I | CTCTTC | 1 cut(s) | 180 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 806 |
| BstC8I | GCNNGC | 3 cut(s) | 52, 291, 844 |
| BstDEI | CTNAG | 5 cut(s) | 252, 416, 531, 636, 720 |
| BstF5I | GGATG | 3 cut(s) | 256, 496, 676 |
| BstHHI | GCGC | 2 cut(s) | 92, 788 |
| BstKTI | GATC | 4 cut(s) | 61, 99, 509, 822 |
| BstMBI | GATC | 4 cut(s) | 58, 96, 506, 819 |
| BstMCI | CGRYCG | 1 cut(s) | 15 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 785, 806 |
| BstNI | CCWGG | 2 cut(s) | 345, 824 |
| BstSCI | CCNGG | 2 cut(s) | 343, 822 |
| BstSLI | GKGCMC | 2 cut(s) | 409, 496 |
| BstV1I | GCAGC | 1 cut(s) | 796 |
| BstV2I | GAAGAC | 3 cut(s) | 149, 155, 388 |
| BstX2I | RGATCY | 1 cut(s) | 506 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 293 |
| BstYI | RGATCY | 1 cut(s) | 506 |
| BstZ17I | GTATAC | 1 cut(s) | 192 |
| Bsu15I | ATCGAT | 1 cut(s) | 42 |
| BsuRI | GGCC | 2 cut(s) | 160, 324 |
| BsuTUI | ATCGAT | 1 cut(s) | 42 |
| BtsCI | GGATG | 3 cut(s) | 256, 496, 676 |
| BtsIMutI | CAGTG | 1 cut(s) | 315 |
| Cac8I | GCNNGC | 3 cut(s) | 52, 291, 844 |
| CfoI | GCGC | 2 cut(s) | 92, 788 |
| Cfr10I | RCCGGY | 2 cut(s) | 10, 152 |
| Cfr13I | GGNCC | 3 cut(s) | 158, 323, 521 |
| ClaI | ATCGAT | 1 cut(s) | 42 |
| Csp6I | GTAC | 2 cut(s) | 129, 283 |
| CspAI | ACCGGT | 1 cut(s) | 152 |
| CviAII | CATG | 2 cut(s) | 100, 197 |
| CviQI | GTAC | 2 cut(s) | 129, 283 |
| DdeI | CTNAG | 5 cut(s) | 252, 416, 531, 636, 720 |
| DpnI | GATC | 4 cut(s) | 60, 98, 508, 821 |
| DpnII | GATC | 4 cut(s) | 58, 96, 506, 819 |
| Eam1104I | CTCTTC | 1 cut(s) | 180 |
| EarI | CTCTTC | 1 cut(s) | 180 |
| Eco130I | CCWWGG | 2 cut(s) | 260, 524 |
| Eco24I | GRGCYC | 1 cut(s) | 478 |
| Eco47I | GGWCC | 1 cut(s) | 521 |
| Eco57I | CTGAAG | 1 cut(s) | 563 |
| EcoO109I | RGGNCCY | 1 cut(s) | 323 |
| EcoRII | CCWGG | 2 cut(s) | 343, 822 |
| EcoT14I | CCWWGG | 2 cut(s) | 260, 524 |
| EcoT38I | GRGCYC | 1 cut(s) | 478 |
| ErhI | CCWWGG | 2 cut(s) | 260, 524 |
| FaeI | CATG | 2 cut(s) | 103, 200 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 253, 285, 369, 401 |
| FaqI | GGGAC | 1 cut(s) | 434 |
| FatI | CATG | 2 cut(s) | 99, 196 |
| FblI | GTMKAC | 2 cut(s) | 18, 191 |
| Fnu4HI | GCNGC | 1 cut(s) | 810 |
| FokI | GGATG | 3 cut(s) | 243, 483, 683 |
| FriOI | GRGCYC | 1 cut(s) | 478 |
| Fsp4HI | GCNGC | 1 cut(s) | 810 |
| FspBI | CTAG | 1 cut(s) | 110 |
| GlaI | GCGC | 2 cut(s) | 91, 787 |
| GluI | GCNGC | 1 cut(s) | 810 |
| GsaI | CCCAGC | 1 cut(s) | 488 |
| GsuI | CTGGAG | 1 cut(s) | 339 |
| HaeIII | GGCC | 2 cut(s) | 160, 324 |
| HapII | CCGG | 2 cut(s) | 11, 153 |
| HhaI | GCGC | 2 cut(s) | 92, 788 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 2 cut(s) | 103, 200 |
| Hin6I | GCGC | 2 cut(s) | 90, 786 |
| HinP1I | GCGC | 2 cut(s) | 90, 786 |
| HincII | GTYRAC | 1 cut(s) | 19 |
| HindII | GTYRAC | 1 cut(s) | 19 |
| HinfI | GANTC | 4 cut(s) | 356, 529, 584, 701 |
| HpaII | CCGG | 2 cut(s) | 11, 153 |
| Hpy166II | GTNNAC | 4 cut(s) | 19, 192, 407, 732 |
| Hpy188I | TCNGA | 8 cut(s) | 96, 107, 417, 448, 589, 613, 689, 721 |
| Hpy188III | TCNNGA | 4 cut(s) | 389, 500, 533, 817 |
| Hpy8I | GTNNAC | 4 cut(s) | 19, 192, 407, 732 |
| Hpy99I | CGWCG | 2 cut(s) | 10, 20 |
| HpyAV | CCTTC | 3 cut(s) | 346, 371, 483 |
| HpyCH4III | ACNGT | 1 cut(s) | 167 |
| HpyCH4V | TGCA | 6 cut(s) | 275, 407, 464, 665, 758, 800 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 785, 806 |
| HpyF3I | CTNAG | 5 cut(s) | 252, 416, 531, 636, 720 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 2 cut(s) | 103, 200 |
| HspAI | GCGC | 2 cut(s) | 90, 786 |
| Kzo9I | GATC | 4 cut(s) | 58, 96, 506, 819 |
| LmnI | GCTCC | 2 cut(s) | 97, 108 |
| Lsp1109I | GCAGC | 1 cut(s) | 796 |
| LweI | GCATC | 5 cut(s) | 112, 127, 265, 382, 622 |
| MaeI | CTAG | 1 cut(s) | 110 |
| MaeIII | GTNAC | 1 cut(s) | 313 |
| MalI | GATC | 4 cut(s) | 60, 98, 508, 821 |
| MboI | GATC | 4 cut(s) | 58, 96, 506, 819 |
| MboII | GAAGA | 7 cut(s) | 154, 160, 194, 197, 229, 393, 418 |
| MflI | RGATCY | 1 cut(s) | 506 |
| MhlI | GDGCHC | 4 cut(s) | 70, 409, 478, 496 |
| MluCI | AATT | 2 cut(s) | 363, 569 |
| MlyI | GAGTC | 1 cut(s) | 523 |
| MmeI | TCCRAC | 2 cut(s) | 130, 772 |
| MspI | CCGG | 2 cut(s) | 11, 153 |
| MspR9I | CCNGG | 2 cut(s) | 345, 824 |
| MvaI | CCWGG | 2 cut(s) | 345, 824 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 785, 806 |
| NdeII | GATC | 4 cut(s) | 58, 96, 506, 819 |
| NlaIII | CATG | 2 cut(s) | 103, 200 |
| NlaIV | GGNNCC | 3 cut(s) | 169, 325, 537 |
| NmuCI | GTSAC | 1 cut(s) | 313 |
| PfeI | GAWTC | 3 cut(s) | 356, 584, 701 |
| PinAI | ACCGGT | 1 cut(s) | 152 |
| PkrI | GCNGC | 1 cut(s) | 811 |
| PleI | GAGTC | 1 cut(s) | 523 |
| PpsI | GAGTC | 1 cut(s) | 523 |
| Psp6I | CCWGG | 2 cut(s) | 343, 822 |
| PspFI | CCCAGC | 1 cut(s) | 484 |
| PspGI | CCWGG | 2 cut(s) | 343, 822 |
| PspN4I | GGNNCC | 3 cut(s) | 169, 325, 537 |
| PspPI | GGNCC | 3 cut(s) | 158, 323, 521 |
| PsuI | RGATCY | 1 cut(s) | 506 |
| RsaI | GTAC | 2 cut(s) | 130, 284 |
| RsaNI | GTAC | 2 cut(s) | 129, 283 |
| SalI | GTCGAC | 1 cut(s) | 17 |
| SatI | GCNGC | 1 cut(s) | 810 |
| Sau3AI | GATC | 4 cut(s) | 58, 96, 506, 819 |
| Sau96I | GGNCC | 3 cut(s) | 158, 323, 521 |
| SchI | GAGTC | 1 cut(s) | 523 |
| ScrFI | CCNGG | 2 cut(s) | 345, 824 |
| SduI | GDGCHC | 4 cut(s) | 70, 409, 478, 496 |
| SfaNI | GCATC | 5 cut(s) | 112, 127, 265, 382, 622 |
| SinI | GGWCC | 1 cut(s) | 521 |
| Sse9I | AATT | 2 cut(s) | 363, 569 |
| SspMI | CTAG | 1 cut(s) | 110 |
| StyD4I | CCNGG | 2 cut(s) | 343, 822 |
| StyI | CCWWGG | 2 cut(s) | 260, 524 |
| TaaI | ACNGT | 1 cut(s) | 167 |
| TaqI | TCGA | 3 cut(s) | 18, 42, 433 |
| TasI | AATT | 2 cut(s) | 363, 569 |
| TfiI | GAWTC | 3 cut(s) | 356, 584, 701 |
| TscAI | CASTG | 1 cut(s) | 322 |
| TseFI | GTSAC | 1 cut(s) | 313 |
| TseI | GCWGC | 1 cut(s) | 809 |
| Tsp45I | GTSAC | 1 cut(s) | 313 |
| TspDTI | ATGAA | 2 cut(s) | 195, 852 |
| TspGWI | ACGGA | 2 cut(s) | 53, 632 |
| TspRI | CASTG | 1 cut(s) | 322 |
| VneI | GTGCAC | 1 cut(s) | 405 |
| VpaK11BI | GGWCC | 1 cut(s) | 521 |
| XapI | RAATTY | 1 cut(s) | 363 |
| XmiI | GTMKAC | 2 cut(s) | 18, 191 |
| XspI | CTAG | 1 cut(s) | 110 |