Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000452

Physical Location & Seq

Genomic Coordinates Reverse (-)

34315517 .. 34317445

Gene Structure 1929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0238100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGGAAAACCCAGATTTAAGAAAGCTCAAGGACAGAAAGAAGGAGATTCTAGTCTAGTTGTTTCTTCAACTGGTACCTCTCCCTCAATCCCTGACAGAGCTGAAGAAGATGTCACGGATGGAGGAGCTCCAGCTTCCTCATCTGACAAGGTTAGTAACAATCCTCGAGCTGATAGAAAACGTAGTTGGGTGTGGGAGCACTTTAAGGAATATAAAGATGTAAAAGTCACTAAAGTAAAGGGTCAAGAAGATATTGTAGAAGAATTTAGGAGGGCTAAGTGTATATATTGTCCTAAGGGTCCTCTAGGAGACTATGCTTGTGATCCTTACAAAAATGGGACTCAAGGGATGATTAGGCACATAAACAAATCATGTAAGTATTATCCCGGAAGAAAGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

133

Amino Acids

14.94

Weight (kDa)

9.45

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000452)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	74
AclWI	GGATC	1 cut(s)	317
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	69
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AluBI	AGCT	5 cut(s)	26, 101, 128, 134, 170
AluI	AGCT	5 cut(s)	26, 101, 128, 134, 170
Alw21I	GWGCWC	2 cut(s)	130, 201
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	263
Asp718I	GGTACC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	299
AsuC2I	CCSGG	1 cut(s)	387
AvaI	CYCGRG	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	299
AxyI	CCTNAGG	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	130
Bbv12I	GWGCWC	2 cut(s)	130, 201
BccI	CCATC	1 cut(s)	113
BcnI	CCSGG	1 cut(s)	387
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	3 cut(s)	51, 56, 305
Bme1390I	CCNGG	1 cut(s)	387
Bme18I	GGWCC	1 cut(s)	299
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	2 cut(s)	76, 300
BmrFI	CCNGG	1 cut(s)	387
BpmI	CTGGAG	1 cut(s)	114
BpuEI	CTTGAG	2 cut(s)	12, 327
BpuMI	CCSGG	1 cut(s)	387
Bse1I	ACTGG	1 cut(s)	76
Bse21I	CCTNAGG	1 cut(s)	294
BseGI	GGATG	2 cut(s)	124, 354
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	138
BshNI	GGYRCC	1 cut(s)	74
BsiHKAI	GWGCWC	2 cut(s)	130, 201
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	387
BslFI	GGGAC	1 cut(s)	352
BsmAI	GTCTC	1 cut(s)	303
BsmFI	GGGAC	1 cut(s)	352
BsoBI	CYCGRG	1 cut(s)	165
Bsp1286I	GDGCHC	2 cut(s)	130, 201
Bsp143I	GATC	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	76, 300
BspPI	GGATC	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	76
BssMI	GATC	1 cut(s)	322
BstDEI	CTNAG	2 cut(s)	276, 294
BstF5I	GGATG	2 cut(s)	124, 354
BstKTI	GATC	1 cut(s)	325
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	1 cut(s)	322
BstSCI	CCNGG	1 cut(s)	385
Bsu36I	CCTNAGG	1 cut(s)	294
BtsCI	GGATG	2 cut(s)	124, 354
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	1 cut(s)	372
CviJI	RGCY	6 cut(s)	26, 101, 128, 134, 170, 275
CviKI_1	RGCY	6 cut(s)	26, 101, 128, 134, 170, 275
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	2 cut(s)	276, 294
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
Ecl136II	GAGCTC	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	299
Eco53kI	GAGCTC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	123
Eco81I	CCTNAGG	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	165
EcoICRI	GAGCTC	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	299
EcoT38I	GRGCYC	1 cut(s)	130
FaeI	CATG	1 cut(s)	375
FaiI	YATR	6 cut(s)	213, 284, 286, 315, 362, 373
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	1 cut(s)	371
FokI	GGATG	2 cut(s)	131, 361
FriOI	GRGCYC	1 cut(s)	130
FspBI	CTAG	3 cut(s)	51, 56, 305
GsuI	CTGGAG	1 cut(s)	114
HapII	CCGG	1 cut(s)	387
Hin1II	CATG	1 cut(s)	375
HinfI	GANTC	2 cut(s)	47, 340
HpaII	CCGG	1 cut(s)	387
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	181
HpyF3I	CTNAG	2 cut(s)	276, 294
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	1 cut(s)	375
KpnI	GGTACC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	322
LmnI	GCTCC	3 cut(s)	125, 133, 196
LpnPI	CCDG	4 cut(s)	25, 57, 105, 144
MaeI	CTAG	3 cut(s)	51, 56, 305
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	3 cut(s)	112, 155, 226
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	6 cut(s)	57, 116, 119, 260, 272, 402
MhlI	GDGCHC	2 cut(s)	130, 201
MluCI	AATT	1 cut(s)	263
MlyI	GAGTC	1 cut(s)	334
MnlI	CCTC	7 cut(s)	88, 94, 116, 148, 174, 264, 312
MseI	TTAA	2 cut(s)	18, 204
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	1 cut(s)	387
NciI	CCSGG	1 cut(s)	387
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	1 cut(s)	375
NlaIV	GGNNCC	2 cut(s)	76, 300
NmuCI	GTSAC	2 cut(s)	112, 226
PaeR7I	CTCGAG	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	47
PfoI	TCCNGGA	1 cut(s)	385
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PpuMI	RGGWCCY	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	130
Psp5II	RGGWCCY	1 cut(s)	299
PspN4I	GGNNCC	2 cut(s)	76, 300
PspPI	GGNCC	1 cut(s)	299
PspPPI	RGGWCCY	1 cut(s)	299
PspXI	VCTCGAGB	1 cut(s)	165
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	130
SaqAI	TTAA	2 cut(s)	18, 204
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	334
ScrFI	CCNGG	1 cut(s)	387
SduI	GDGCHC	2 cut(s)	130, 201
SetI	ASST	8 cut(s)	28, 80, 103, 130, 136, 153, 172, 184
Sfr274I	CTCGAG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	299
SlaI	CTCGAG	1 cut(s)	165
SmlI	CTYRAG	3 cut(s)	27, 165, 342
SmoI	CTYRAG	3 cut(s)	27, 165, 342
Sse9I	AATT	1 cut(s)	263
SspMI	CTAG	3 cut(s)	51, 56, 305
SstI	GAGCTC	1 cut(s)	130
StyD4I	CCNGG	1 cut(s)	385
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	1 cut(s)	166
TasI	AATT	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	2 cut(s)	18, 204
Tru9I	TTAA	2 cut(s)	18, 204
TseFI	GTSAC	2 cut(s)	112, 226
Tsp45I	GTSAC	2 cut(s)	112, 226
TspGWI	ACGGA	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	1 cut(s)	263
XhoI	CTCGAG	1 cut(s)	165
XspI	CTAG	3 cut(s)	51, 56, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.