Rorug03G0269500

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
26539764 .. 26543108
3345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0269500.1

Sequence Viewer

Length: 1560 bp
ATGGTATACCACCAGCGCAGGAAAGGCGAAAAGCCTACCGACGATGAAGATGAGGAGGGTCAGAGTCTTGCAATGGAGTGTGCGAGCTCTGGTTACTACAAAAGATCAAGGCCCAAGCTTCTCACCTTTCTCTTCATCTCTCTTCTCTCTTGTAGCTTCATATTAGCCCCTCATCTGATATTTTCCTCTGTCACCACTTTCTCTCTTTCACAATCAGCACAAGTAGAAAACGAAGGCCCTAGTACTGCTGCTGTTATAAACGCAAAGGCTCCCTTCTATTCTTCAGTCACTAATGGAGCTATATGTTGTGATAGAAGCAGTATCCGTTCAGATGTTTGTACCATGAAAGGGGATGTAAGAACACACTCGCTTTCCTCTTCTATCTTCGTCTACGAATCGCAAGATGAAGCAGTGAAGAATGAGGAGGATCTCCAACACGAAAAGATCAAACCGTACACCAGAAAATGGGAAACAAATATTATGGACACCATTGATGAGTTGGACCTCATTGCAAAGAAAAACACTCTGATCATGAACCATCCTAAATGTGATGTCCAACATGATGTTCCGGCAGTGTTTTTTTCAACAGGGGGCTACACCGGCAACGTCTACCATGAATTTAATGATGGGATAATGCCACTGTACATTACTTCCCAACATTTCAACAAGAAGGTTGTGTTCGTCATTCTTGAATTTCACAATTGGTGGGTCATGAAATATTCAGACATTCTTTCCCATCTCTCAGATTATCCTGTAGTAGATTTCCGTACTGATAAGAGAGTTCATTGCTTCCCTGAAGCAATTGTCGGTTTGAAAATTCACGATGAGCTGACTGTGGATTCTTCATTGATGGAAGGGAATGCGAGCATAGTCGAGTTTCGAAATCTCCTAGACAGAGCTTACCGGCCTCAGATCAGAAGTCTAATGCATGAACATGCAAAGCTTTCTGTTGTTCCCAAGTTGAAAAAGCCATCAAGAATCAGGAGAAAAGTGCAAGAGCATCCATTCAATAAGCTGAAGCTGGTTATTATATCTCGAAATGGATCAAGGGCAATAACAAATGAGAAGTTGCTGGTGAAAATGGCTGAGAAAATCGGGTTTCAAGTCCAAGTTTTGAGGCCAGATAGCAGGACAATGTTAGCAGAGATTTATTGGGCTCTAAATTCGAGTGACGTCATGATTGGGGTTCATGGTGCTGCCATGACACATTTTCTGTTCATGAAGCCTGGTTCAGTGTTCATTCAAGTCATTCCTCTCGGAACTGAATGGGCAGCAGAGGCATATTATGGAGAACCTGCAAAGAAGCTTGGGTTGAACTACATTGGATACCAAATCCTTACCAAAGAGAGCTCATTATATGACAAGTATGATAAGGATGATCCTGTTCTTAAAAATCCAAGGAGTGTAACCAGAAAGGGATGGCAATACACAAAGACGATCTATCTTGAGGATCAGACAGTGAGACTACACCTCCCAAGATTTCGGAAGCAGTTGGTTGGCGCTTTTGATTACACCGTTGATAGATTGAATCAGCAGAGTCCTAATATTCAGTCACATTGA

Protein Analysis

519

Amino Acids

59.45

Weight (kDa)

8.57

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 312 - 414 8.1e-15 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000452)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
AatII GACGTC 1 cut(s) 1176
Acc36I ACCTGC 1 cut(s) 1303
AccB7I CCANNNNNTGG 1 cut(s) 465
AccI GTMKAC 3 cut(s) 6, 390, 609
AclWI GGATC 4 cut(s) 435, 1051, 1373, 1458
AcsI RAATTY 4 cut(s) 617, 692, 816, 1162
AcuI CTGAAG 3 cut(s) 267, 816, 1037
AcyI GRCGYC 1 cut(s) 1173
AfaI GTAC 5 cut(s) 244, 340, 455, 644, 769
AfiI CCNNNNNNNGG 2 cut(s) 348, 465
AjnI CCWGG 1 cut(s) 1225
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
Alw21I GWGCWC 2 cut(s) 89, 1352
Alw26I GTCTC 1 cut(s) 1456
AlwI GGATC 4 cut(s) 435, 1051, 1373, 1458
AoxI GGCC 4 cut(s) 110, 235, 905, 1118
ApeKI GCWGC 3 cut(s) 248, 1196, 1271
ApoI RAATTY 4 cut(s) 617, 692, 816, 1162
AspLEI GCGC 2 cut(s) 18, 1502
AspS9I GGNCC 3 cut(s) 111, 236, 502
AsuHPI GGTGA 3 cut(s) 115, 184, 1087
AsuII TTCGAA 1 cut(s) 880
AvaII GGWCC 1 cut(s) 502
BanII GRGCYC 3 cut(s) 89, 1159, 1352
Bbv12I GWGCWC 2 cut(s) 89, 1352
BbvI GCAGC 3 cut(s) 235, 1183, 1283
BccI CCATC 6 cut(s) 546, 620, 744, 844, 979, 1413
BciT130I CCWGG 1 cut(s) 1227
BciVI GTATCC 2 cut(s) 332, 1319
BclI TGATCA 1 cut(s) 528
BcoDI GTCTC 1 cut(s) 1456
BfaI CTAG 2 cut(s) 240, 890
BfmI CTRYAG 1 cut(s) 753
BfoI RGCGCY 1 cut(s) 1503
BfuAI ACCTGC 1 cut(s) 1303
BfuI GTATCC 2 cut(s) 332, 1319
BisI GCNGC 3 cut(s) 249, 1197, 1272
BlsI GCNGC 3 cut(s) 250, 1198, 1273
BmcAI AGTACT 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 1227
Bme18I GGWCC 1 cut(s) 502
BmgT120I GGNCC 3 cut(s) 111, 236, 502
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 1227
BmsI GCATC 1 cut(s) 1009
Bpu14I TTCGAA 1 cut(s) 880
BpuEI CTTGAG 1 cut(s) 1466
BsaHI GRCGYC 1 cut(s) 1173
BsaJI CCNNGG 1 cut(s) 1397
BsaXI ACNNNNNCTCC 2 cut(s) 1455, 1485
Bsc4I CCNNNNNNNGG 2 cut(s) 348, 465
Bse118I RCCGGY 2 cut(s) 599, 903
Bse3DI GCAATG 3 cut(s) 78, 507, 784
BseBI CCWGG 1 cut(s) 1227
BseDI CCNNGG 1 cut(s) 1397
BseGI GGATG 5 cut(s) 358, 538, 1000, 1381, 1424
BseLI CCNNNNNNNGG 2 cut(s) 348, 465
BseMI GCAATG 3 cut(s) 78, 507, 784
BseMII CTCAG 3 cut(s) 756, 923, 1077
BseRI GAGGAG 2 cut(s) 68, 437
BseXI GCAGC 3 cut(s) 235, 1183, 1283
BshFI GGCC 4 cut(s) 112, 237, 907, 1120
BsiHKAI GWGCWC 2 cut(s) 89, 1352
BsiSI CCGG 3 cut(s) 569, 600, 904
BslI CCNNNNNNNGG 2 cut(s) 348, 465
BsmAI GTCTC 1 cut(s) 1456
BsmI GAATGC 1 cut(s) 865
BsnI GGCC 4 cut(s) 112, 237, 907, 1120
Bsp119I TTCGAA 1 cut(s) 880
Bsp1286I GDGCHC 3 cut(s) 89, 1159, 1352
Bsp1407I TGTACA 1 cut(s) 642
Bsp143I GATC 9 cut(s) 104, 427, 444, 528, 912, 1043, 1378, 1437, 1450
BspANI GGCC 4 cut(s) 112, 237, 907, 1120
BspCNI CTCAG 3 cut(s) 755, 922, 1078
BspHI TCATGA 4 cut(s) 531, 711, 1176, 1218
BspLI GGNNCC 1 cut(s) 270
BspMI ACCTGC 1 cut(s) 1303
BspPI GGATC 4 cut(s) 435, 1051, 1373, 1458
BspT104I TTCGAA 1 cut(s) 880
BsrDI GCAATG 3 cut(s) 78, 507, 784
BsrFI RCCGGY 2 cut(s) 599, 903
BsrGI TGTACA 1 cut(s) 642
BssAI RCCGGY 2 cut(s) 599, 903
BssECI CCNNGG 1 cut(s) 1397
BssMI GATC 9 cut(s) 104, 427, 444, 528, 912, 1043, 1378, 1437, 1450
BssNAI GTATAC 1 cut(s) 7
BssNI GRCGYC 1 cut(s) 1173
BssT1I CCWWGG 1 cut(s) 1397
Bst1107I GTATAC 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 1227
Bst4CI ACNGT 5 cut(s) 453, 642, 835, 1459, 1516
Bst6I CTCTTC 3 cut(s) 137, 147, 382
BstACI GRCGYC 1 cut(s) 1173
BstAUI TGTACA 1 cut(s) 642
BstBI TTCGAA 1 cut(s) 880
BstC8I GCNNGC 2 cut(s) 85, 865
BstDEI CTNAG 3 cut(s) 742, 909, 1086
BstF5I GGATG 5 cut(s) 358, 538, 1000, 1381, 1424
BstH2I RGCGCY 1 cut(s) 1503
BstHHI GCGC 2 cut(s) 18, 1502
BstKTI GATC 9 cut(s) 107, 430, 447, 531, 915, 1046, 1381, 1440, 1453
BstMAI GTCTC 1 cut(s) 1456
BstMBI GATC 9 cut(s) 104, 427, 444, 528, 912, 1043, 1378, 1437, 1450
BstMWI GCNNNNNNNGC 3 cut(s) 24, 600, 1277
BstNI CCWGG 1 cut(s) 1227
BstNSI RCATGY 1 cut(s) 938
BstSCI CCNGG 1 cut(s) 1225
BstSFI CTRYAG 1 cut(s) 753
BstV1I GCAGC 3 cut(s) 235, 1183, 1283
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
BstZ17I GTATAC 1 cut(s) 7
BsuI GTATCC 2 cut(s) 332, 1319
BsuRI GGCC 4 cut(s) 112, 237, 907, 1120
BtsCI GGATG 5 cut(s) 358, 538, 1000, 1381, 1424
BtsI GCAGTG 2 cut(s) 417, 579
BtsIMutI CAGTG 5 cut(s) 417, 579, 638, 1239, 1464
BveI ACCTGC 1 cut(s) 1303
Cac8I GCNNGC 2 cut(s) 85, 865
CciI TCATGA 4 cut(s) 531, 711, 1176, 1218
CfoI GCGC 2 cut(s) 18, 1502
Cfr10I RCCGGY 2 cut(s) 599, 903
Cfr13I GGNCC 3 cut(s) 111, 236, 502
Csp6I GTAC 5 cut(s) 243, 339, 454, 643, 768
CviQI GTAC 5 cut(s) 243, 339, 454, 643, 768
DdeI CTNAG 3 cut(s) 742, 909, 1086
DpnI GATC 9 cut(s) 106, 429, 446, 530, 914, 1045, 1380, 1439, 1452
DpnII GATC 9 cut(s) 104, 427, 444, 528, 912, 1043, 1378, 1437, 1450
Eam1104I CTCTTC 3 cut(s) 137, 147, 382
EarI CTCTTC 3 cut(s) 137, 147, 382
Ecl136II GAGCTC 2 cut(s) 87, 1350
Eco130I CCWWGG 1 cut(s) 1397
Eco24I GRGCYC 3 cut(s) 89, 1159, 1352
Eco47I GGWCC 1 cut(s) 502
Eco53kI GAGCTC 2 cut(s) 87, 1350
Eco57I CTGAAG 3 cut(s) 267, 816, 1037
EcoICRI GAGCTC 2 cut(s) 87, 1350
EcoO109I RGGNCCY 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 1225
EcoT14I CCWWGG 1 cut(s) 1397
EcoT22I ATGCAT 1 cut(s) 930
EcoT38I GRGCYC 3 cut(s) 89, 1159, 1352
ErhI CCWWGG 1 cut(s) 1397
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FbaI TGATCA 1 cut(s) 528
FblI GTMKAC 3 cut(s) 6, 390, 609
Fnu4HI GCNGC 3 cut(s) 249, 1197, 1272
FokI GGATG 5 cut(s) 365, 525, 987, 1388, 1431
FriOI GRGCYC 3 cut(s) 89, 1159, 1352
Fsp4HI GCNGC 3 cut(s) 249, 1197, 1272
FspBI CTAG 2 cut(s) 240, 890
GlaI GCGC 2 cut(s) 17, 1501
GluI GCNGC 3 cut(s) 249, 1197, 1272
HaeII RGCGCY 1 cut(s) 1503
HaeIII GGCC 4 cut(s) 112, 237, 907, 1120
HapII CCGG 3 cut(s) 569, 600, 904
HhaI GCGC 2 cut(s) 18, 1502
Hin1I GRCGYC 1 cut(s) 1173
Hin6I GCGC 2 cut(s) 16, 1500
HinP1I GCGC 2 cut(s) 16, 1500
HindIII AAGCTT 3 cut(s) 116, 941, 1304
HinfI GANTC 6 cut(s) 64, 395, 839, 978, 1528, 1537
HpaII CCGG 3 cut(s) 569, 600, 904
HphI GGTGA 3 cut(s) 115, 184, 1087
Hpy166II GTNNAC 4 cut(s) 7, 391, 456, 610
Hpy8I GTNNAC 4 cut(s) 7, 391, 456, 610
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 4 cut(s) 227, 283, 664, 848
HpyCH4III ACNGT 5 cut(s) 453, 642, 835, 1459, 1516
HpyCH4IV ACGT 2 cut(s) 606, 1173
HpyCH4V TGCA 6 cut(s) 71, 512, 928, 938, 994, 1298
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 600, 1277
HpyF3I CTNAG 3 cut(s) 742, 909, 1086
HpySE526I ACGT 2 cut(s) 606, 1173
Hsp92I GRCGYC 1 cut(s) 1173
HspAI GCGC 2 cut(s) 16, 1500
Ksp22I TGATCA 1 cut(s) 528
Kzo9I GATC 9 cut(s) 104, 427, 444, 528, 912, 1043, 1378, 1437, 1450
LmnI GCTCC 2 cut(s) 274, 296
Lsp1109I GCAGC 3 cut(s) 235, 1183, 1283
LweI GCATC 1 cut(s) 1009
MaeI CTAG 2 cut(s) 240, 890
MaeII ACGT 2 cut(s) 606, 1173
MaeIII GTNAC 6 cut(s) 92, 190, 286, 1169, 1405, 1551
MalI GATC 9 cut(s) 106, 429, 446, 530, 914, 1045, 1380, 1439, 1452
MboI GATC 9 cut(s) 104, 427, 444, 528, 912, 1043, 1378, 1437, 1450
MboII GAAGA 8 cut(s) 59, 124, 134, 273, 369, 376, 427, 834
MfeI CAATTG 2 cut(s) 700, 801
MflI RGATCY 1 cut(s) 427
MhlI GDGCHC 3 cut(s) 89, 1159, 1352
MluCI AATT 6 cut(s) 617, 692, 700, 801, 816, 1162
MlyI GAGTC 2 cut(s) 73, 1546
MmeI TCCRAC 3 cut(s) 457, 480, 580
Mph1103I ATGCAT 1 cut(s) 930
MseI TTAA 2 cut(s) 621, 1389
MslI CAYNNNNRTG 1 cut(s) 933
MspI CCGG 3 cut(s) 569, 600, 904
MspR9I CCNGG 1 cut(s) 1227
MunI CAATTG 2 cut(s) 700, 801
Mva1269I GAATGC 1 cut(s) 865
MvaI CCWGG 1 cut(s) 1227
MwoI GCNNNNNNNGC 3 cut(s) 24, 600, 1277
NdeII GATC 9 cut(s) 104, 427, 444, 528, 912, 1043, 1378, 1437, 1450
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 4 cut(s) 190, 286, 1169, 1551
NsiI ATGCAT 1 cut(s) 930
NspI RCATGY 1 cut(s) 938
NspV TTCGAA 1 cut(s) 880
PagI TCATGA 4 cut(s) 531, 711, 1176, 1218
PctI GAATGC 1 cut(s) 865
PfeI GAWTC 4 cut(s) 395, 839, 978, 1528
PflMI CCANNNNNTGG 1 cut(s) 465
PkrI GCNGC 3 cut(s) 250, 1198, 1273
PleI GAGTC 2 cut(s) 72, 1545
PpsI GAGTC 2 cut(s) 72, 1545
PsiI TTATAA 1 cut(s) 257
Psp124BI GAGCTC 2 cut(s) 89, 1352
Psp6I CCWGG 1 cut(s) 1225
PspGI CCWGG 1 cut(s) 1225
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 3 cut(s) 111, 236, 502
PsuI RGATCY 1 cut(s) 427
RsaI GTAC 5 cut(s) 244, 340, 455, 644, 769
RsaNI GTAC 5 cut(s) 243, 339, 454, 643, 768
RseI CAYNNNNRTG 1 cut(s) 933
SacI GAGCTC 2 cut(s) 89, 1352
SaqAI TTAA 2 cut(s) 621, 1389
SatI GCNGC 3 cut(s) 249, 1197, 1272
Sau3AI GATC 9 cut(s) 104, 427, 444, 528, 912, 1043, 1378, 1437, 1450
Sau96I GGNCC 3 cut(s) 111, 236, 502
ScaI AGTACT 1 cut(s) 244
SchI GAGTC 2 cut(s) 73, 1546
ScrFI CCNGG 1 cut(s) 1227
SduI GDGCHC 3 cut(s) 89, 1159, 1352
SfaNI GCATC 1 cut(s) 1009
SfcI CTRYAG 1 cut(s) 753
SfuI TTCGAA 1 cut(s) 880
SinI GGWCC 1 cut(s) 502
SmiMI CAYNNNNRTG 1 cut(s) 933
SmlI CTYRAG 1 cut(s) 1445
SmoI CTYRAG 1 cut(s) 1445
Sse9I AATT 6 cut(s) 617, 692, 700, 801, 816, 1162
SspI AATATT 3 cut(s) 478, 719, 1546
SspMI CTAG 2 cut(s) 240, 890
SstI GAGCTC 2 cut(s) 89, 1352
StyD4I CCNGG 1 cut(s) 1225
StyI CCWWGG 1 cut(s) 1397
TaaI ACNGT 5 cut(s) 453, 642, 835, 1459, 1516
TaiI ACGT 2 cut(s) 609, 1176
TaqI TCGA 4 cut(s) 873, 880, 1036, 1166
TasI AATT 6 cut(s) 617, 692, 700, 801, 816, 1162
TatI WGTACW 2 cut(s) 242, 642
TfiI GAWTC 4 cut(s) 395, 839, 978, 1528
Tru1I TTAA 2 cut(s) 621, 1389
Tru9I TTAA 2 cut(s) 621, 1389
TscAI CASTG 5 cut(s) 417, 579, 645, 1239, 1464
TseFI GTSAC 4 cut(s) 190, 286, 1169, 1551
TseI GCWGC 3 cut(s) 248, 1196, 1271
Tsp45I GTSAC 4 cut(s) 190, 286, 1169, 1551
TspGWI ACGGA 2 cut(s) 314, 755
TspRI CASTG 5 cut(s) 417, 579, 645, 1239, 1464
Van91I CCANNNNNTGG 1 cut(s) 465
VpaK11BI GGWCC 1 cut(s) 502
XapI RAATTY 4 cut(s) 617, 692, 816, 1162
XceI RCATGY 1 cut(s) 938
XcmI CCANNNNNNNNNTGG 1 cut(s) 496
XmiI GTMKAC 3 cut(s) 6, 390, 609
XspI CTAG 2 cut(s) 240, 890
ZraI GACGTC 1 cut(s) 1174
ZrmI AGTACT 1 cut(s) 244
Zsp2I ATGCAT 1 cut(s) 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.