Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000452

Physical Location & Seq

Genomic Coordinates Reverse (-)

22067991 .. 22069287

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0214200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTCCGGGGAACCTTCTTCACCGGCTTCGTCCTCAAATTTTGAAACTGAGCAGTCTTATTCAGACAGCAGTATTTCTCTGAGTCCAAGTATTCAAATGGTTTCAAAATCGGTGTCTGACAGGCTGCTGGGCAAGTTCTTTGATGCCTCGCAATACGACTTTGATTATGAGCAAAGTGGTTTGTGGTCTCCTCCACTACGCCGAAGTGTGTTTCTCGACTCACCGGGGAATATAATCTCGTGTTTTGATCATCAAGATGATGATGAAAAAAGATTCTACTCCAAGCTTAAGAGTGCCAAGATGGCATGGCCTAGACGCTTCTTTTGTTTGATCGCTGCCTTATGGTGCTCTTCAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

119

Amino Acids

13.4

Weight (kDa)

5.01

Isoelectric Point (pI)

96.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000452)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	336
AflII	CTTAAG	1 cut(s)	287
AgsI	TTSAA	3 cut(s)	44, 95, 105
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw21I	GWGCWC	1 cut(s)	350
Alw26I	GTCTC	1 cut(s)	192
AoxI	GGCC	1 cut(s)	308
ApeKI	GCWGC	2 cut(s)	124, 335
ApoI	RAATTY	1 cut(s)	37
ArsI	GACNNNNNNTTYG	4 cut(s)	98, 130, 306, 338
AsuC2I	CCSGG	2 cut(s)	7, 225
AsuHPI	GGTGA	2 cut(s)	12, 213
BauI	CACGAG	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	350
BbvI	GCAGC	2 cut(s)	111, 322
BccI	CCATC	1 cut(s)	295
BclI	TGATCA	1 cut(s)	247
BcnI	CCSGG	2 cut(s)	7, 225
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	312
BfrI	CTTAAG	1 cut(s)	287
BglI	GCCNNNNNGGC	1 cut(s)	302
BisI	GCNGC	2 cut(s)	125, 336
BlsI	GCNGC	2 cut(s)	126, 337
Bme1390I	CCNGG	2 cut(s)	7, 225
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	2 cut(s)	7, 225
BmsI	GCATC	1 cut(s)	133
BpuMI	CCSGG	2 cut(s)	7, 225
BsaI	GGTCTC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	6, 224
Bse118I	RCCGGY	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	6, 224
BseMII	CTCAG	2 cut(s)	39, 71
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	111, 322
BseYI	CCCAGC	1 cut(s)	127
BshFI	GGCC	1 cut(s)	310
BsiHKAI	GWGCWC	1 cut(s)	350
BsiSI	CCGG	3 cut(s)	6, 23, 224
BsmAI	GTCTC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	310
Bso31I	GGTCTC	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	350
Bsp143I	GATC	2 cut(s)	247, 330
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	2 cut(s)	40, 72
BspLI	GGNNCC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	355
BspTI	CTTAAG	1 cut(s)	287
BspTNI	GGTCTC	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	6, 224
BssMI	GATC	2 cut(s)	247, 330
BssSI	CACGAG	1 cut(s)	238
Bst2BI	CACGAG	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	355
BstAFI	CTTAAG	1 cut(s)	287
BstDEI	CTNAG	2 cut(s)	48, 80
BstKTI	GATC	2 cut(s)	250, 333
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	2 cut(s)	247, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstSCI	CCNGG	2 cut(s)	5, 223
BstV1I	GCAGC	2 cut(s)	111, 322
BsuRI	GGCC	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	22
CseI	GACGC	1 cut(s)	324
CviAII	CATG	1 cut(s)	306
CviJI	RGCY	4 cut(s)	26, 124, 286, 310
CviKI_1	RGCY	4 cut(s)	26, 124, 286, 310
DdeI	CTNAG	2 cut(s)	48, 80
DpnI	GATC	2 cut(s)	249, 332
DpnII	GATC	2 cut(s)	247, 330
Eam1104I	CTCTTC	1 cut(s)	355
EarI	CTCTTC	1 cut(s)	355
Eco31I	GGTCTC	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	336
FaeI	CATG	1 cut(s)	309
FaiI	YATR	4 cut(s)	168, 233, 307, 343
FatI	CATG	1 cut(s)	305
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	2 cut(s)	125, 336
Fsp4HI	GCNGC	2 cut(s)	125, 336
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	2 cut(s)	125, 336
GsaI	CCCAGC	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	3 cut(s)	6, 23, 224
HgaI	GACGC	1 cut(s)	324
Hin1II	CATG	1 cut(s)	309
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	3 cut(s)	82, 218, 273
HpaII	CCGG	3 cut(s)	6, 23, 224
HphI	GGTGA	2 cut(s)	12, 213
Hpy188I	TCNGA	3 cut(s)	64, 81, 118
Hpy188III	TCNNGA	2 cut(s)	215, 254
HpyAV	CCTTC	1 cut(s)	24
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	2 cut(s)	48, 80
Hsp92II	CATG	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	247, 330
LguI	GCTCTTC	1 cut(s)	355
LpnPI	CCDG	6 cut(s)	19, 36, 106, 113, 237, 339
Lsp1109I	GCAGC	2 cut(s)	111, 322
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	1 cut(s)	312
MalI	GATC	2 cut(s)	249, 332
MboI	GATC	2 cut(s)	247, 330
MboII	GAAGA	2 cut(s)	9, 342
MhlI	GDGCHC	1 cut(s)	350
MluCI	AATT	1 cut(s)	37
MlyI	GAGTC	2 cut(s)	91, 212
MnlI	CCTC	3 cut(s)	43, 157, 201
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	255
MspCI	CTTAAG	1 cut(s)	287
MspI	CCGG	3 cut(s)	6, 23, 224
MspR9I	CCNGG	2 cut(s)	7, 225
MwoI	GCNNNNNNNGC	1 cut(s)	302
NciI	CCSGG	2 cut(s)	7, 225
NdeII	GATC	2 cut(s)	247, 330
NlaIII	CATG	1 cut(s)	309
NlaIV	GGNNCC	1 cut(s)	12
PciSI	GCTCTTC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	273
PkrI	GCNGC	2 cut(s)	126, 337
PleI	GAGTC	2 cut(s)	90, 212
PpsI	GAGTC	2 cut(s)	90, 212
PspFI	CCCAGC	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	12
RseI	CAYNNNNRTG	1 cut(s)	255
SapI	GCTCTTC	1 cut(s)	355
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	2 cut(s)	125, 336
Sau3AI	GATC	2 cut(s)	247, 330
SchI	GAGTC	2 cut(s)	91, 212
ScrFI	CCNGG	2 cut(s)	7, 225
SduI	GDGCHC	1 cut(s)	350
SetI	ASST	2 cut(s)	16, 288
SfaNI	GCATC	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	1 cut(s)	37
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	2 cut(s)	5, 223
TaqI	TCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	273
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseI	GCWGC	2 cut(s)	124, 335
TspDTI	ATGAA	1 cut(s)	279
Vha464I	CTTAAG	1 cut(s)	287
XapI	RAATTY	1 cut(s)	37
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.