Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000452

Physical Location & Seq

Genomic Coordinates Forward (+)

16011077 .. 16014476

Gene Structure 3400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0189600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2202 bp

ATGGAAACCCGAAACTTCTTCAGCCTTTTCTTTCTTTCGCTCTTCGTCGGATTTGTCCTTCTCTTCACTTGGGGTCACCTCCCTTACGTGCCTGCATACACGACTGACCTTCTCGACTGCACCACCAACTCAGTATGGTGCGCCTCCAAAAACCGCTTTCAGTCCAAACAGTCCAGCAACCACATCAAAAACAAAAACCACCGCAGCCACAACCACGCCTCCGACACTCCCCACCACCCTCTCGACCCCCTCACAGTCCAAGAACTCAACAAAATCCGAACCATCCTCTCCTCCCACGCGCTCTTCAAGTCGTCCTCAGCCTACGCGCTCCACTCCATCGAGCTCGAAGAGCCCGACAAGCCTCTCGTCCTCCGATGGAAAAAGGGCGACCCGCTGCTACCCAGAAAGGCCTCCGTCATCGCACGTGCCGCCGGGAAGGCGCACGTGCTGACCGTTGACTTAGCCACGAGCGAGGTGTCCGTACAGCAGACCGGAACCCACTTCGGCTATCCGATGCTGACCATGGAGGAAATAACCGCCGCGATCTGGGTCCCACTTTCGAACGCCAAGTTCAACCGCACGATCATCCAGCGCGGCGTTGATCTGGCGGACCTTGCGTGTTTGCCGATCTCGTCGGGGTGGTTCGATGAGTACGAGGAGAACAGGAGGAGGTTGATTAAGGTACAGTGCTTCTCCACGAAGGACACTGTGAACTTTTACATGAGGCCAATCGAAGGGTTGACCGTTCTCGTTGACTTGGACGCCGAACAAGTGGTGGAGATTTCCGACAAGGGCGGGAACATTCCGATACCGAAGGCCGCCAACACAGACTATAGATACTCCGCCAGCCAGGAGGTCAGTCGAGTGATCAAGCTAGTGAATCCCATTTCCCTTGAGCAACCAAAAGGTCCAAGTTTTACCGTGGAGGACGGTCACTTAGTAAAATGGGCAAATTGGGAATTTCATGTAAAACCCGACGCCAGAGCCGGCGTGATCATATCTCAAGCTAGGGTCCGTGACCCAGATACCGGTGACCTAAGGGACGTGATGTACAAAGGGTTTCCGTCGGAGCTTTTTGTGCCTTACATGGACCCCACGGATGCATGGTACTTCAAGACTTATATGGATGCGGGCGAATACGGGTTCGGGTTGCAGGCCATGCCGCTCGACCCGCTTAATGATTGCCCCCGTAACGCCTACTACATTGATGGTGTGTTTGCCACATCTGATGGAACGCCGTACGTCCGGTCAAACATGATCTGCGTGTTCGAGAGCTATGGCGGGGATATCGGGTGGCGCCACACGGAGAGTCCGATAACGGGGATGGAGGTGAGAGAAGTGAGGCCAAAGGTGACACTAGTGGTTAGAATGGCAGCCTCAGTTGGTAACTATGACTATATCGTGGACTGGGAGTTCCAAACAGACGGATTAATCAGAGTAAAGGTTGGACTTAGTGGTATTTTGATGGTGAAAGGCACACCCTATGAGAACATGAACCAAGTCTTTGACCTAGACAATCTCCACGGCACACTGTTATCTGAAAACGTTGTTGGAGTTATTCATGACCATTACGTAACATTTCATCTTGATATGGATGTAGACGGTTCTGAAAATTCCTTTGTTAAAGTGAATCTCCAAAGGCAGAAAACCTCTCTTGATGAGTCCCCAAGGAAAAGCTTCTTAAAAGCAACTAGAACTGTGGCCAAAACGGAGAAGGATGCACAAGTTAAGCTAAAACTCTATGACCCGTCGGAGTTCCATGTGATCAACCCGTCGAAACAGACCCGGGTTGGGAACCCTGTCGGGTATAAGGTGGTTCCTGGTGCCACTGCTGCTAGTTTGCTTGATCCTGAAGACCCTCCCCAAAAGAGGGCTGCTTTTACGAATAACCAAATCTGGGTCACTCAATACAATCGGAGTGAGCAGTGGGCAGGTGGGTTGTTTGCTTACCAAAGCCATGGAGAAGATACTTTGGCCATGTGGTCTGACAAGGATCGAGAAATTGAGAATAAAGACATTGTGGTTTGGTACACATTAGGGTTTCATCATATACCATGCCAAGAAGACTTTCCTGTAATGCCGACGGTGTCATCTAGCTTTGATTTGAAGCCTGTGAATTTCTTTCAGAGCAACCCCATACTCCGGACTCCGCCTAATGTTGAGAGCGATTTGCCTGTTTGCTCACCTGTTGCTTCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

733

Amino Acids

82.61

Weight (kDa)

5.84

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN2	PF02727	79 - 160	9e-24	Copper amine oxidase, N2 domain
Cu_amine_oxidN3	PF02728	171 - 271	1e-23	Copper amine oxidase, N3 domain
Cu_amine_oxid	PF01179	298 - 713	1e-140	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000452)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1922
Acc36I	ACCTGC	1 cut(s)	1922
AccB1I	GGYRCC	2 cut(s)	1296, 1823
AccBSI	CCGCTC	1 cut(s)	1165
AccI	GTMKAC	1 cut(s)	1599
AccII	CGCG	4 cut(s)	299, 326, 542, 594
AccIII	TCCGGA	1 cut(s)	2142
AclI	AACGTT	1 cut(s)	1545
AclWI	GGATC	2 cut(s)	1841, 2001
AcoI	YGGCCR	2 cut(s)	1701, 1974
AcsI	RAATTY	3 cut(s)	959, 1612, 2116
AcuI	CTGAAG	2 cut(s)	4, 1872
AcvI	CACGTG	2 cut(s)	425, 445
AcyI	GRCGYC	3 cut(s)	762, 978, 1297
AfaI	GTAC	7 cut(s)	483, 653, 684, 1052, 1109, 1241, 2030
AfiI	CCNNNNNNNGG	9 cut(s)	546, 734, 1028, 1319, 1791, 1869, 1870, 1897, 2142
AgeI	ACCGGT	1 cut(s)	1028
AgsI	TTSAA	5 cut(s)	307, 574, 1114, 2107, 2196
AhlI	ACTAGT	1 cut(s)	1357
AjiI	CACGTC	1 cut(s)	1045
AjnI	CCWGG	2 cut(s)	849, 1819
AjuI	GAANNNNNNNTTGG	4 cut(s)	1533, 1565, 2052, 2084
AloI	GAACNNNNNNTCC	2 cut(s)	1397, 1429
AluBI	AGCT	8 cut(s)	343, 874, 1007, 1072, 1275, 1677, 1732, 2097
AluI	AGCT	8 cut(s)	343, 874, 1007, 1072, 1275, 1677, 1732, 2097
Alw21I	GWGCWC	1 cut(s)	345
AlwI	GGATC	2 cut(s)	1841, 2001
Ama87I	CYCGRG	1 cut(s)	1785
Aor13HI	TCCGGA	1 cut(s)	2142
AoxI	GGCC	7 cut(s)	408, 725, 816, 1155, 1343, 1701, 1974
ApeKI	GCWGC	5 cut(s)	204, 394, 1373, 1832, 1874
ApoI	RAATTY	3 cut(s)	959, 1612, 2116
AseI	ATTAAT	1 cut(s)	1430
AsiGI	ACCGGT	1 cut(s)	1028
Asp700I	GAANNNNTTC	2 cut(s)	1676, 2067
AspLEI	GCGC	6 cut(s)	143, 301, 328, 442, 594, 1299
AspS9I	GGNCC	5 cut(s)	550, 610, 908, 1012, 1090
AsuC2I	CCSGG	3 cut(s)	433, 1786, 1787
AsuHPI	GGTGA	6 cut(s)	68, 1043, 1342, 1363, 1480, 2175
AsuII	TTCGAA	1 cut(s)	560
AvaI	CYCGRG	1 cut(s)	1785
AvaII	GGWCC	5 cut(s)	550, 610, 908, 1012, 1090
AxyI	CCTNAGG	1 cut(s)	1037
BalI	TGGCCA	2 cut(s)	1703, 1976
BanI	GGYRCC	2 cut(s)	1296, 1823
BanII	GRGCYC	2 cut(s)	345, 354
BauI	CACGAG	1 cut(s)	466
BbrPI	CACGTG	2 cut(s)	425, 445
BbsI	GAAGAC	2 cut(s)	1860, 2070
Bbv12I	GWGCWC	1 cut(s)	345
BbvCI	CCTCAGC	1 cut(s)	316
BbvI	GCAGC	5 cut(s)	216, 381, 1385, 1819, 1861
BccI	CCATC	7 cut(s)	290, 344, 369, 1202, 1223, 1318, 1459
BceAI	ACGGC	2 cut(s)	1222, 1540
BciT130I	CCWGG	2 cut(s)	851, 1821
BclI	TGATCA	3 cut(s)	867, 993, 1764
BcnI	CCSGG	3 cut(s)	433, 1786, 1787
BcuI	ACTAGT	1 cut(s)	1357
BfaI	CTAG	7 cut(s)	875, 1008, 1358, 1511, 1692, 1836, 2094
BfmI	CTRYAG	1 cut(s)	832
BfoI	RGCGCY	1 cut(s)	1300
BfuAI	ACCTGC	1 cut(s)	1922
BglI	GCCNNNNNGGC	1 cut(s)	437
Bme1390I	CCNGG	5 cut(s)	433, 851, 1786, 1787, 1821
Bme18I	GGWCC	5 cut(s)	550, 610, 908, 1012, 1090
BmeT110I	CYCGRG	1 cut(s)	1785
BmgBI	CACGTC	1 cut(s)	1045
BmgT120I	GGNCC	5 cut(s)	550, 610, 908, 1012, 1090
BmiI	GGNNCC	9 cut(s)	496, 551, 552, 1013, 1092, 1298, 1796, 1818, 1825
BmrFI	CCNGG	5 cut(s)	433, 851, 1786, 1787, 1821
BmrI	ACTGGG	1 cut(s)	1417
BmsI	GCATC	4 cut(s)	504, 1090, 1117, 1708
BmuI	ACTGGG	1 cut(s)	1417
BpiI	GAAGAC	2 cut(s)	1860, 2070
Bpu10I	CCTNAGC	1 cut(s)	316
Bpu14I	TTCGAA	1 cut(s)	560
BpuEI	CTTGAG	2 cut(s)	914, 987
BpuMI	CCSGG	3 cut(s)	433, 1786, 1787
BsaAI	YACGTR	4 cut(s)	88, 425, 445, 1573
BsaHI	GRCGYC	3 cut(s)	762, 978, 1297
BsaJI	CCNNGG	7 cut(s)	522, 921, 1095, 1522, 1667, 1785, 1957
BsaWI	WCCGGW	4 cut(s)	491, 1028, 1245, 2142
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	9 cut(s)	546, 734, 1028, 1319, 1791, 1869, 1870, 1897, 2142
Bse118I	RCCGGY	2 cut(s)	986, 1028
Bse1I	ACTGG	1 cut(s)	1412
Bse21I	CCTNAGG	1 cut(s)	1037
BseAI	TCCGGA	1 cut(s)	2142
BseBI	CCWGG	2 cut(s)	851, 1821
BseDI	CCNNGG	7 cut(s)	522, 921, 1095, 1522, 1667, 1785, 1957
BseGI	GGATG	7 cut(s)	282, 585, 1105, 1132, 1329, 1600, 1723
BseLI	CCNNNNNNNGG	9 cut(s)	546, 734, 1028, 1319, 1791, 1869, 1870, 1897, 2142
BseMII	CTCAG	3 cut(s)	144, 330, 1392
BseNI	ACTGG	1 cut(s)	1412
BseRI	GAGGAG	3 cut(s)	280, 671, 682
BseXI	GCAGC	5 cut(s)	216, 381, 1385, 1819, 1861
BsgI	GTGCAG	1 cut(s)	103
Bsh1236I	CGCG	4 cut(s)	299, 326, 542, 594
BshFI	GGCC	7 cut(s)	410, 727, 818, 1157, 1345, 1703, 1976
BshNI	GGYRCC	2 cut(s)	1296, 1823
BshTI	ACCGGT	1 cut(s)	1028
BsiHKAI	GWGCWC	1 cut(s)	345
BsiHKCI	CYCGRG	1 cut(s)	1785
BsiSI	CCGG	7 cut(s)	432, 492, 987, 1029, 1246, 1786, 2143
BsiWI	CGTACG	1 cut(s)	1239
BslFI	GGGAC	3 cut(s)	536, 1055, 1648
BslI	CCNNNNNNNGG	9 cut(s)	546, 734, 1028, 1319, 1791, 1869, 1870, 1897, 2142
BsmFI	GGGAC	3 cut(s)	536, 1055, 1648
BsnI	GGCC	7 cut(s)	410, 727, 818, 1157, 1345, 1703, 1976
BsoBI	CYCGRG	1 cut(s)	1785
Bsp119I	TTCGAA	1 cut(s)	560
Bsp1286I	GDGCHC	2 cut(s)	345, 354
Bsp13I	TCCGGA	1 cut(s)	2142
Bsp1407I	TGTACA	1 cut(s)	1050
Bsp19I	CCATGG	2 cut(s)	522, 1957
BspANI	GGCC	7 cut(s)	410, 727, 818, 1157, 1345, 1703, 1976
BspCNI	CTCAG	3 cut(s)	143, 329, 1391
BspEI	TCCGGA	1 cut(s)	2142
BspFNI	CGCG	4 cut(s)	299, 326, 542, 594
BspHI	TCATGA	1 cut(s)	1561
BspLI	GGNNCC	9 cut(s)	496, 551, 552, 1013, 1092, 1298, 1796, 1818, 1825
BspMI	ACCTGC	1 cut(s)	1922
BspPI	GGATC	2 cut(s)	1841, 2001
BspQI	GCTCTTC	3 cut(s)	47, 308, 342
BspT104I	TTCGAA	1 cut(s)	560
BspT107I	GGYRCC	2 cut(s)	1296, 1823
BsrBI	CCGCTC	1 cut(s)	1165
BsrFI	RCCGGY	2 cut(s)	986, 1028
BsrGI	TGTACA	1 cut(s)	1050
BsrI	ACTGG	1 cut(s)	1412
BssAI	RCCGGY	2 cut(s)	986, 1028
BssECI	CCNNGG	7 cut(s)	522, 921, 1095, 1522, 1667, 1785, 1957
BssNI	GRCGYC	3 cut(s)	762, 978, 1297
BssSI	CACGAG	1 cut(s)	466
BssT1I	CCWWGG	3 cut(s)	522, 1667, 1957
Bst2BI	CACGAG	1 cut(s)	466
Bst2UI	CCWGG	2 cut(s)	851, 1821
Bst6I	CTCTTC	4 cut(s)	47, 68, 308, 342
BstACI	GRCGYC	3 cut(s)	762, 978, 1297
BstAPI	GCANNNNNTGC	1 cut(s)	1159
BstAUI	TGTACA	1 cut(s)	1050
BstBAI	YACGTR	4 cut(s)	88, 425, 445, 1573
BstBI	TTCGAA	1 cut(s)	560
BstC8I	GCNNGC	5 cut(s)	93, 847, 988, 1132, 1155
BstDEI	CTNAG	8 cut(s)	130, 316, 460, 937, 1037, 1378, 1451, 2199
BstDSI	CCRYGG	5 cut(s)	522, 921, 1095, 1522, 1957
BstEII	GGTNACC	2 cut(s)	74, 1031
BstF5I	GGATG	7 cut(s)	282, 585, 1105, 1132, 1329, 1600, 1723
BstFNI	CGCG	4 cut(s)	299, 326, 542, 594
BstH2I	RGCGCY	1 cut(s)	1300
BstHHI	GCGC	6 cut(s)	143, 301, 328, 442, 594, 1299
BstMWI	GCNNNNNNNGC	9 cut(s)	349, 358, 428, 437, 614, 1078, 1159, 1171, 1832
BstNI	CCWGG	2 cut(s)	851, 1821
BstPI	GGTNACC	2 cut(s)	74, 1031
BstSCI	CCNGG	5 cut(s)	431, 849, 1784, 1785, 1819
BstSFI	CTRYAG	1 cut(s)	832
BstSNI	TACGTA	1 cut(s)	1573
BstUI	CGCG	4 cut(s)	299, 326, 542, 594
BstV1I	GCAGC	5 cut(s)	216, 381, 1385, 1819, 1861
BstV2I	GAAGAC	2 cut(s)	1860, 2070
BstXI	CCANNNNNNTGG	1 cut(s)	1958
Bsu36I	CCTNAGG	1 cut(s)	1037
BsuRI	GGCC	7 cut(s)	410, 727, 818, 1157, 1345, 1703, 1976
BtgI	CCRYGG	5 cut(s)	522, 921, 1095, 1522, 1957
BtgZI	GCGATG	1 cut(s)	403
BtrI	CACGTC	1 cut(s)	1045
BtsCI	GGATG	7 cut(s)	282, 585, 1105, 1132, 1329, 1600, 1723
BtsI	GCAGTG	2 cut(s)	1827, 1931
BtsIMutI	CAGTG	5 cut(s)	692, 705, 1529, 1827, 1931
BveI	ACCTGC	1 cut(s)	1922
Cac8I	GCNNGC	5 cut(s)	93, 847, 988, 1132, 1155
CciI	TCATGA	1 cut(s)	1561
CfoI	GCGC	6 cut(s)	143, 301, 328, 442, 594, 1299
Cfr10I	RCCGGY	2 cut(s)	986, 1028
Cfr13I	GGNCC	5 cut(s)	550, 610, 908, 1012, 1090
Cfr9I	CCCGGG	1 cut(s)	1785
CseI	GACGC	2 cut(s)	770, 986
Csp6I	GTAC	7 cut(s)	482, 652, 683, 1051, 1108, 1240, 2029
CspAI	ACCGGT	1 cut(s)	1028
CviQI	GTAC	7 cut(s)	482, 652, 683, 1051, 1108, 1240, 2029
DdeI	CTNAG	8 cut(s)	130, 316, 460, 937, 1037, 1378, 1451, 2199
DinI	GGCGCC	1 cut(s)	1298
EaeI	YGGCCR	2 cut(s)	1701, 1974
Eam1104I	CTCTTC	4 cut(s)	47, 68, 308, 342
EarI	CTCTTC	4 cut(s)	47, 68, 308, 342
EciI	GGCGGA	3 cut(s)	623, 832, 2139
Ecl136II	GAGCTC	1 cut(s)	343
Eco105I	TACGTA	1 cut(s)	1573
Eco130I	CCWWGG	3 cut(s)	522, 1667, 1957
Eco147I	AGGCCT	1 cut(s)	410
Eco24I	GRGCYC	2 cut(s)	345, 354
Eco32I	GATATC	1 cut(s)	1288
Eco47I	GGWCC	5 cut(s)	550, 610, 908, 1012, 1090
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	2 cut(s)	4, 1872
Eco72I	CACGTG	2 cut(s)	425, 445
Eco81I	CCTNAGG	1 cut(s)	1037
Eco88I	CYCGRG	1 cut(s)	1785
Eco91I	GGTNACC	2 cut(s)	74, 1031
EcoICRI	GAGCTC	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	550
EcoO65I	GGTNACC	2 cut(s)	74, 1031
EcoRII	CCWGG	2 cut(s)	849, 1819
EcoRV	GATATC	1 cut(s)	1288
EcoT14I	CCWWGG	3 cut(s)	522, 1667, 1957
EcoT22I	ATGCAT	1 cut(s)	1105
EcoT38I	GRGCYC	2 cut(s)	345, 354
EgeI	GGCGCC	1 cut(s)	1298
EheI	GGCGCC	1 cut(s)	1298
ErhI	CCWWGG	3 cut(s)	522, 1667, 1957
FaqI	GGGAC	3 cut(s)	536, 1055, 1648
FauI	CCCGC	5 cut(s)	399, 788, 1123, 1179, 1274
FbaI	TGATCA	3 cut(s)	867, 993, 1764
FblI	GTMKAC	1 cut(s)	1599
FokI	GGATG	7 cut(s)	269, 572, 1112, 1139, 1336, 1607, 1730
FriOI	GRGCYC	2 cut(s)	345, 354
FspBI	CTAG	7 cut(s)	875, 1008, 1358, 1511, 1692, 1836, 2094
GlaI	GCGC	6 cut(s)	142, 300, 327, 441, 593, 1298
HaeII	RGCGCY	1 cut(s)	1300
HaeIII	GGCC	7 cut(s)	410, 727, 818, 1157, 1345, 1703, 1976
HapII	CCGG	7 cut(s)	432, 492, 987, 1029, 1246, 1786, 2143
HgaI	GACGC	2 cut(s)	770, 986
HhaI	GCGC	6 cut(s)	143, 301, 328, 442, 594, 1299
Hin1I	GRCGYC	3 cut(s)	762, 978, 1297
Hin6I	GCGC	6 cut(s)	141, 299, 326, 440, 592, 1297
HinP1I	GCGC	6 cut(s)	141, 299, 326, 440, 592, 1297
HincII	GTYRAC	3 cut(s)	457, 741, 754
HindII	GTYRAC	3 cut(s)	457, 741, 754
HindIII	AAGCTT	1 cut(s)	1675
HinfI	GANTC	5 cut(s)	880, 1309, 1630, 1661, 2146
HpaII	CCGG	7 cut(s)	432, 492, 987, 1029, 1246, 1786, 2143
HphI	GGTGA	6 cut(s)	68, 1043, 1342, 1363, 1480, 2175
Hpy166II	GTNNAC	7 cut(s)	457, 712, 741, 754, 1405, 1600, 2031
Hpy8I	GTNNAC	7 cut(s)	457, 712, 741, 754, 1405, 1600, 2031
Hpy99I	CGWCG	7 cut(s)	50, 637, 980, 1069, 1753, 1777, 2086
HpyAV	CCTTC	7 cut(s)	68, 119, 430, 694, 728, 808, 1708
HpyCH4IV	ACGT	7 cut(s)	87, 424, 444, 1044, 1242, 1545, 1572
HpyCH4V	TGCA	5 cut(s)	95, 120, 1103, 1153, 1721
HpyF10VI	GCNNNNNNNGC	9 cut(s)	349, 358, 428, 437, 614, 1078, 1159, 1171, 1832
HpyF3I	CTNAG	8 cut(s)	130, 316, 460, 937, 1037, 1378, 1451, 2199
HpySE526I	ACGT	7 cut(s)	87, 424, 444, 1044, 1242, 1545, 1572
Hsp92I	GRCGYC	3 cut(s)	762, 978, 1297
HspAI	GCGC	6 cut(s)	141, 299, 326, 440, 592, 1297
KasI	GGCGCC	1 cut(s)	1296
KflI	GGGWCCC	1 cut(s)	550
Kpn2I	TCCGGA	1 cut(s)	2142
KroI	GCCGGC	1 cut(s)	986
KroNI	GCCGGC	1 cut(s)	988
Ksp22I	TGATCA	3 cut(s)	867, 993, 1764
LguI	GCTCTTC	3 cut(s)	47, 308, 342
LmnI	GCTCC	2 cut(s)	333, 1069
Lsp1109I	GCAGC	5 cut(s)	216, 381, 1385, 1819, 1861
LweI	GCATC	4 cut(s)	504, 1090, 1117, 1708
MaeI	CTAG	7 cut(s)	875, 1008, 1358, 1511, 1692, 1836, 2094
MaeII	ACGT	7 cut(s)	87, 424, 444, 1044, 1242, 1545, 1572
MaeIII	GTNAC	9 cut(s)	74, 932, 1016, 1031, 1190, 1351, 1385, 1573, 1900
MbiI	CCGCTC	1 cut(s)	1165
MboII	GAAGA	8 cut(s)	10, 34, 55, 295, 359, 1865, 1976, 2075
MhlI	GDGCHC	2 cut(s)	345, 354
MlsI	TGGCCA	2 cut(s)	1703, 1976
MluCI	AATT	5 cut(s)	952, 959, 1612, 2001, 2116
MluNI	TGGCCA	2 cut(s)	1703, 1976
Mly113I	GGCGCC	1 cut(s)	1297
MlyI	GAGTC	3 cut(s)	1318, 1670, 2140
MmeI	TCCRAC	7 cut(s)	28, 246, 810, 1047, 1426, 1531, 1731
Mox20I	TGGCCA	2 cut(s)	1703, 1976
Mph1103I	ATGCAT	1 cut(s)	1105
MroI	TCCGGA	1 cut(s)	2142
MroNI	GCCGGC	1 cut(s)	986
MroXI	GAANNNNTTC	2 cut(s)	1676, 2067
MscI	TGGCCA	2 cut(s)	1703, 1976
MseI	TTAA	6 cut(s)	678, 1176, 1430, 1623, 1682, 1728
Msp20I	TGGCCA	2 cut(s)	1703, 1976
MspA1I	CMGCKG	1 cut(s)	394
MspI	CCGG	7 cut(s)	432, 492, 987, 1029, 1246, 1786, 2143
MspR9I	CCNGG	5 cut(s)	433, 851, 1786, 1787, 1821
MvaI	CCWGG	2 cut(s)	851, 1821
MvnI	CGCG	4 cut(s)	299, 326, 542, 594
MwoI	GCNNNNNNNGC	9 cut(s)	349, 358, 428, 437, 614, 1078, 1159, 1171, 1832
NaeI	GCCGGC	1 cut(s)	988
NarI	GGCGCC	1 cut(s)	1297
NciI	CCSGG	3 cut(s)	433, 1786, 1787
NcoI	CCATGG	2 cut(s)	522, 1957
NgoMIV	GCCGGC	1 cut(s)	986
NlaIV	GGNNCC	9 cut(s)	496, 551, 552, 1013, 1092, 1298, 1796, 1818, 1825
NmuCI	GTSAC	6 cut(s)	74, 932, 1016, 1031, 1351, 1900
NsiI	ATGCAT	1 cut(s)	1105
NspV	TTCGAA	1 cut(s)	560
PagI	TCATGA	1 cut(s)	1561
PaqCI	CACCTGC	1 cut(s)	1922
PceI	AGGCCT	1 cut(s)	410
PciSI	GCTCTTC	3 cut(s)	47, 308, 342
PcsI	WCGNNNNNNNCGW	4 cut(s)	351, 450, 651, 1310
PdiI	GCCGGC	1 cut(s)	988
PdmI	GAANNNNTTC	2 cut(s)	1676, 2067
PfeI	GAWTC	2 cut(s)	880, 1630
Pfl23II	CGTACG	1 cut(s)	1239
PflFI	GACNNNGTC	1 cut(s)	2086
PinAI	ACCGGT	1 cut(s)	1028
PleI	GAGTC	3 cut(s)	1317, 1669, 2140
PluTI	GGCGCC	1 cut(s)	1300
PmaCI	CACGTG	2 cut(s)	425, 445
PmlI	CACGTG	2 cut(s)	425, 445
PpsI	GAGTC	3 cut(s)	1317, 1669, 2140
Ppu21I	YACGTR	4 cut(s)	88, 425, 445, 1573
PpuMI	RGGWCCY	1 cut(s)	550
PshBI	ATTAAT	1 cut(s)	1430
Psp124BI	GAGCTC	1 cut(s)	345
Psp1406I	AACGTT	1 cut(s)	1545
Psp5II	RGGWCCY	1 cut(s)	550
Psp6I	CCWGG	2 cut(s)	849, 1819
PspCI	CACGTG	2 cut(s)	425, 445
PspEI	GGTNACC	2 cut(s)	74, 1031
PspGI	CCWGG	2 cut(s)	849, 1819
PspLI	CGTACG	1 cut(s)	1239
PspN4I	GGNNCC	9 cut(s)	496, 551, 552, 1013, 1092, 1298, 1796, 1818, 1825
PspPI	GGNCC	5 cut(s)	550, 610, 908, 1012, 1090
PspPPI	RGGWCCY	1 cut(s)	550
PsyI	GACNNNGTC	1 cut(s)	2086
RsaI	GTAC	7 cut(s)	483, 653, 684, 1052, 1109, 1241, 2030
RsaNI	GTAC	7 cut(s)	482, 652, 683, 1051, 1108, 1240, 2029
SacI	GAGCTC	1 cut(s)	345
SapI	GCTCTTC	3 cut(s)	47, 308, 342
SaqAI	TTAA	6 cut(s)	678, 1176, 1430, 1623, 1682, 1728
Sau96I	GGNCC	5 cut(s)	550, 610, 908, 1012, 1090
SchI	GAGTC	3 cut(s)	1318, 1670, 2140
ScrFI	CCNGG	5 cut(s)	433, 851, 1786, 1787, 1821
SduI	GDGCHC	2 cut(s)	345, 354
SfaNI	GCATC	4 cut(s)	504, 1090, 1117, 1708
SfcI	CTRYAG	1 cut(s)	832
SfoI	GGCGCC	1 cut(s)	1298
SfuI	TTCGAA	1 cut(s)	560
SinI	GGWCC	5 cut(s)	550, 610, 908, 1012, 1090
SmaI	CCCGGG	1 cut(s)	1787
SmlI	CTYRAG	2 cut(s)	893, 1002
SmoI	CTYRAG	2 cut(s)	893, 1002
SnaBI	TACGTA	1 cut(s)	1573
SpeI	ACTAGT	1 cut(s)	1357
Sse9I	AATT	5 cut(s)	952, 959, 1612, 2001, 2116
SseBI	AGGCCT	1 cut(s)	410
SspDI	GGCGCC	1 cut(s)	1296
SspMI	CTAG	7 cut(s)	875, 1008, 1358, 1511, 1692, 1836, 2094
SstI	GAGCTC	1 cut(s)	345
StuI	AGGCCT	1 cut(s)	410
StyD4I	CCNGG	5 cut(s)	431, 849, 1784, 1785, 1819
StyI	CCWWGG	3 cut(s)	522, 1667, 1957
TaiI	ACGT	7 cut(s)	90, 427, 447, 1047, 1245, 1548, 1575
TasI	AATT	5 cut(s)	952, 959, 1612, 2001, 2116
TatI	WGTACW	1 cut(s)	1050
TauI	GCSGC	5 cut(s)	431, 542, 597, 821, 1165
TfiI	GAWTC	2 cut(s)	880, 1630
Tru1I	TTAA	6 cut(s)	678, 1176, 1430, 1623, 1682, 1728
Tru9I	TTAA	6 cut(s)	678, 1176, 1430, 1623, 1682, 1728
TscAI	CASTG	5 cut(s)	692, 712, 1536, 1834, 1931
TseFI	GTSAC	6 cut(s)	74, 932, 1016, 1031, 1351, 1900
TseI	GCWGC	5 cut(s)	204, 394, 1373, 1832, 1874
Tsp45I	GTSAC	6 cut(s)	74, 932, 1016, 1031, 1351, 1900
TspDTI	ATGAA	5 cut(s)	953, 1508, 1550, 1571, 2033
TspGWI	ACGGA	8 cut(s)	403, 469, 1004, 1053, 1112, 1319, 1440, 1724
TspMI	CCCGGG	1 cut(s)	1785
TspRI	CASTG	5 cut(s)	692, 712, 1536, 1834, 1931
Tth111I	GACNNNGTC	1 cut(s)	2086
VpaK11BI	GGWCC	5 cut(s)	550, 610, 908, 1012, 1090
VspI	ATTAAT	1 cut(s)	1430
XapI	RAATTY	3 cut(s)	959, 1612, 2116
XmaI	CCCGGG	1 cut(s)	1785
XmiI	GTMKAC	1 cut(s)	1599
XmnI	GAANNNNTTC	2 cut(s)	1676, 2067
XspI	CTAG	7 cut(s)	875, 1008, 1358, 1511, 1692, 1836, 2094
Zsp2I	ATGCAT	1 cut(s)	1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.