Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 290 |
| AccII | CGCG | 1 cut(s) | 77 |
| AccIII | TCCGGA | 1 cut(s) | 733 |
| AclWI | GGATC | 2 cut(s) | 608, 628 |
| AcuI | CTGAAG | 1 cut(s) | 882 |
| AcyI | GRCGYC | 1 cut(s) | 171 |
| AfaI | GTAC | 3 cut(s) | 443, 589, 911 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 217, 519, 520, 854 |
| AflIII | ACRYGT | 1 cut(s) | 727 |
| AgsI | TTSAA | 5 cut(s) | 160, 249, 493, 673, 761 |
| AjnI | CCWGG | 1 cut(s) | 499 |
| AleI | CACNNNNGTG | 1 cut(s) | 899 |
| AluBI | AGCT | 6 cut(s) | 308, 362, 404, 560, 745, 866 |
| AluI | AGCT | 6 cut(s) | 308, 362, 404, 560, 745, 866 |
| Alw21I | GWGCWC | 1 cut(s) | 364 |
| Alw26I | GTCTC | 2 cut(s) | 670, 816 |
| AlwI | GGATC | 2 cut(s) | 608, 628 |
| Ama87I | CYCGRG | 1 cut(s) | 652 |
| Aor13HI | TCCGGA | 1 cut(s) | 733 |
| AspLEI | GCGC | 1 cut(s) | 77 |
| AspS9I | GGNCC | 1 cut(s) | 256 |
| AsuC2I | CCSGG | 2 cut(s) | 653, 654 |
| AsuHPI | GGTGA | 3 cut(s) | 80, 200, 253 |
| AvaI | CYCGRG | 1 cut(s) | 652 |
| AvaII | GGWCC | 1 cut(s) | 256 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 571, 604 |
| BanII | GRGCYC | 2 cut(s) | 364, 849 |
| BbsI | GAAGAC | 1 cut(s) | 802 |
| Bbv12I | GWGCWC | 1 cut(s) | 364 |
| BccI | CCATC | 1 cut(s) | 539 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 334, 368 |
| BciT130I | CCWGG | 1 cut(s) | 501 |
| BcnI | CCSGG | 2 cut(s) | 653, 654 |
| BcoDI | GTCTC | 2 cut(s) | 670, 816 |
| Bme1390I | CCNGG | 3 cut(s) | 501, 653, 654 |
| Bme18I | GGWCC | 1 cut(s) | 256 |
| BmeT110I | CYCGRG | 1 cut(s) | 652 |
| BmgT120I | GGNCC | 1 cut(s) | 256 |
| BmiI | GGNNCC | 2 cut(s) | 505, 774 |
| BmrFI | CCNGG | 3 cut(s) | 501, 653, 654 |
| BmsI | GCATC | 1 cut(s) | 437 |
| BpiI | GAAGAC | 1 cut(s) | 802 |
| BpmI | CTGGAG | 1 cut(s) | 522 |
| BpuEI | CTTGAG | 2 cut(s) | 734, 737 |
| BpuMI | CCSGG | 2 cut(s) | 653, 654 |
| BsaBI | GATNNNNATC | 1 cut(s) | 354 |
| BsaHI | GRCGYC | 1 cut(s) | 171 |
| BsaI | GGTCTC | 1 cut(s) | 816 |
| BsaJI | CCNNGG | 3 cut(s) | 518, 651, 652 |
| BsaWI | WCCGGW | 1 cut(s) | 733 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 499, 529, 650, 680 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 217, 519, 520, 854 |
| Bse118I | RCCGGY | 2 cut(s) | 41, 83 |
| Bse1I | ACTGG | 1 cut(s) | 919 |
| Bse3DI | GCAATG | 1 cut(s) | 319 |
| Bse8I | GATNNNNATC | 1 cut(s) | 354 |
| BseAI | TCCGGA | 1 cut(s) | 733 |
| BseBI | CCWGG | 1 cut(s) | 501 |
| BseDI | CCNNGG | 3 cut(s) | 518, 651, 652 |
| BseGI | GGATG | 3 cut(s) | 147, 550, 616 |
| BseJI | GATNNNNATC | 1 cut(s) | 354 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 217, 519, 520, 854 |
| BseMI | GCAATG | 1 cut(s) | 319 |
| BseMII | CTCAG | 1 cut(s) | 819 |
| BseNI | ACTGG | 1 cut(s) | 919 |
| BseRI | GAGGAG | 1 cut(s) | 737 |
| BseYI | CCCAGC | 1 cut(s) | 130 |
| Bsh1236I | CGCG | 1 cut(s) | 77 |
| Bsh1285I | CGRYCG | 1 cut(s) | 358 |
| BsiEI | CGRYCG | 1 cut(s) | 358 |
| BsiHKAI | GWGCWC | 1 cut(s) | 364 |
| BsiHKCI | CYCGRG | 1 cut(s) | 652 |
| BsiSI | CCGG | 4 cut(s) | 42, 84, 653, 734 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 217, 519, 520, 854 |
| BsmAI | GTCTC | 2 cut(s) | 670, 816 |
| BsmBI | CGTCTC | 1 cut(s) | 670 |
| Bso31I | GGTCTC | 1 cut(s) | 816 |
| BsoBI | CYCGRG | 1 cut(s) | 652 |
| Bsp1286I | GDGCHC | 2 cut(s) | 364, 849 |
| Bsp13I | TCCGGA | 1 cut(s) | 733 |
| Bsp143I | GATC | 6 cut(s) | 144, 190, 274, 355, 613, 633 |
| BspCNI | CTCAG | 1 cut(s) | 818 |
| BspEI | TCCGGA | 1 cut(s) | 733 |
| BspFNI | CGCG | 1 cut(s) | 77 |
| BspLI | GGNNCC | 2 cut(s) | 505, 774 |
| BspPI | GGATC | 2 cut(s) | 608, 628 |
| BspTNI | GGTCTC | 1 cut(s) | 816 |
| BsrDI | GCAATG | 1 cut(s) | 319 |
| BsrFI | RCCGGY | 2 cut(s) | 41, 83 |
| BsrI | ACTGG | 1 cut(s) | 919 |
| BssAI | RCCGGY | 2 cut(s) | 41, 83 |
| BssECI | CCNNGG | 3 cut(s) | 518, 651, 652 |
| BssMI | GATC | 6 cut(s) | 144, 190, 274, 355, 613, 633 |
| BssNI | GRCGYC | 1 cut(s) | 171 |
| BssT1I | CCWWGG | 1 cut(s) | 518 |
| Bst2UI | CCWGG | 1 cut(s) | 501 |
| Bst4CI | ACNGT | 3 cut(s) | 253, 664, 792 |
| BstACI | GRCGYC | 1 cut(s) | 171 |
| BstC8I | GCNNGC | 3 cut(s) | 73, 310, 378 |
| BstDEI | CTNAG | 1 cut(s) | 805 |
| BstEII | GGTNACC | 1 cut(s) | 86 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 215 |
| BstF5I | GGATG | 3 cut(s) | 147, 550, 616 |
| BstFNI | CGCG | 1 cut(s) | 77 |
| BstHHI | GCGC | 1 cut(s) | 77 |
| BstKTI | GATC | 6 cut(s) | 147, 193, 277, 358, 616, 636 |
| BstMAI | GTCTC | 2 cut(s) | 670, 816 |
| BstMBI | GATC | 6 cut(s) | 144, 190, 274, 355, 613, 633 |
| BstMCI | CGRYCG | 1 cut(s) | 358 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 401 |
| BstNI | CCWGG | 1 cut(s) | 501 |
| BstNSI | RCATGY | 1 cut(s) | 731 |
| BstPI | GGTNACC | 1 cut(s) | 86 |
| BstSCI | CCNGG | 3 cut(s) | 499, 651, 652 |
| BstUI | CGCG | 1 cut(s) | 77 |
| BstV2I | GAAGAC | 1 cut(s) | 802 |
| BstX2I | RGATCY | 1 cut(s) | 633 |
| BstYI | RGATCY | 1 cut(s) | 633 |
| BtsCI | GGATG | 3 cut(s) | 147, 550, 616 |
| BtsI | GCAGTG | 1 cut(s) | 507 |
| BtsIMutI | CAGTG | 3 cut(s) | 258, 507, 906 |
| Cac8I | GCNNGC | 3 cut(s) | 73, 310, 378 |
| CfoI | GCGC | 1 cut(s) | 77 |
| Cfr10I | RCCGGY | 2 cut(s) | 41, 83 |
| Cfr13I | GGNCC | 1 cut(s) | 256 |
| Cfr9I | CCCGGG | 1 cut(s) | 652 |
| CseI | GACGC | 1 cut(s) | 160 |
| Csp6I | GTAC | 3 cut(s) | 442, 588, 910 |
| CviAII | CATG | 3 cut(s) | 365, 646, 728 |
| CviQI | GTAC | 3 cut(s) | 442, 588, 910 |
| DdeI | CTNAG | 1 cut(s) | 805 |
| DpnI | GATC | 6 cut(s) | 146, 192, 276, 357, 615, 635 |
| DpnII | GATC | 6 cut(s) | 144, 190, 274, 355, 613, 633 |
| Ecl136II | GAGCTC | 1 cut(s) | 362 |
| Eco130I | CCWWGG | 1 cut(s) | 518 |
| Eco24I | GRGCYC | 2 cut(s) | 364, 849 |
| Eco31I | GGTCTC | 1 cut(s) | 816 |
| Eco47I | GGWCC | 1 cut(s) | 256 |
| Eco53kI | GAGCTC | 1 cut(s) | 362 |
| Eco57I | CTGAAG | 1 cut(s) | 882 |
| Eco88I | CYCGRG | 1 cut(s) | 652 |
| Eco91I | GGTNACC | 1 cut(s) | 86 |
| EcoICRI | GAGCTC | 1 cut(s) | 362 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 215 |
| EcoO65I | GGTNACC | 1 cut(s) | 86 |
| EcoRII | CCWGG | 1 cut(s) | 499 |
| EcoT14I | CCWWGG | 1 cut(s) | 518 |
| EcoT38I | GRGCYC | 2 cut(s) | 364, 849 |
| ErhI | CCWWGG | 1 cut(s) | 518 |
| Esp3I | CGTCTC | 1 cut(s) | 670 |
| FaeI | CATG | 3 cut(s) | 368, 649, 731 |
| FatI | CATG | 3 cut(s) | 364, 645, 727 |
| FokI | GGATG | 3 cut(s) | 134, 557, 623 |
| FriOI | GRGCYC | 2 cut(s) | 364, 849 |
| GlaI | GCGC | 1 cut(s) | 76 |
| GsaI | CCCAGC | 1 cut(s) | 134 |
| GsuI | CTGGAG | 1 cut(s) | 522 |
| HapII | CCGG | 4 cut(s) | 42, 84, 653, 734 |
| HgaI | GACGC | 1 cut(s) | 160 |
| HhaI | GCGC | 1 cut(s) | 77 |
| Hin1I | GRCGYC | 1 cut(s) | 171 |
| Hin1II | CATG | 3 cut(s) | 368, 649, 731 |
| Hin6I | GCGC | 1 cut(s) | 75 |
| HinP1I | GCGC | 1 cut(s) | 75 |
| HincII | GTYRAC | 1 cut(s) | 175 |
| HindII | GTYRAC | 1 cut(s) | 175 |
| HinfI | GANTC | 4 cut(s) | 22, 436, 493, 757 |
| HpaII | CCGG | 4 cut(s) | 42, 84, 653, 734 |
| HphI | GGTGA | 3 cut(s) | 80, 200, 253 |
| Hpy166II | GTNNAC | 4 cut(s) | 175, 256, 444, 904 |
| Hpy188I | TCNGA | 4 cut(s) | 35, 337, 618, 857 |
| Hpy188III | TCNNGA | 6 cut(s) | 110, 319, 734, 751, 761, 814 |
| Hpy8I | GTNNAC | 4 cut(s) | 175, 256, 444, 904 |
| Hpy99I | CGWCG | 2 cut(s) | 68, 391 |
| HpyAV | CCTTC | 4 cut(s) | 211, 342, 679, 811 |
| HpyCH4III | ACNGT | 3 cut(s) | 253, 664, 792 |
| HpyCH4IV | ACGT | 2 cut(s) | 389, 582 |
| HpyCH4V | TGCA | 1 cut(s) | 296 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 401 |
| HpyF3I | CTNAG | 1 cut(s) | 805 |
| HpySE526I | ACGT | 2 cut(s) | 389, 582 |
| Hsp92I | GRCGYC | 1 cut(s) | 171 |
| Hsp92II | CATG | 3 cut(s) | 368, 649, 731 |
| HspAI | GCGC | 1 cut(s) | 75 |
| Kpn2I | TCCGGA | 1 cut(s) | 733 |
| Kzo9I | GATC | 6 cut(s) | 144, 190, 274, 355, 613, 633 |
| LmnI | GCTCC | 2 cut(s) | 503, 750 |
| LweI | GCATC | 1 cut(s) | 437 |
| MaeII | ACGT | 2 cut(s) | 389, 582 |
| MaeIII | GTNAC | 2 cut(s) | 86, 800 |
| MalI | GATC | 6 cut(s) | 146, 192, 276, 357, 615, 635 |
| MboI | GATC | 6 cut(s) | 144, 190, 274, 355, 613, 633 |
| MboII | GAAGA | 6 cut(s) | 709, 712, 733, 749, 766, 802 |
| MflI | RGATCY | 1 cut(s) | 633 |
| MhlI | GDGCHC | 2 cut(s) | 364, 849 |
| MluCI | AATT | 4 cut(s) | 266, 297, 460, 678 |
| MmeI | TCCRAC | 1 cut(s) | 13 |
| MnlI | CCTC | 8 cut(s) | 71, 418, 525, 647, 757, 758, 832, 923 |
| MroI | TCCGGA | 1 cut(s) | 733 |
| MseI | TTAA | 4 cut(s) | 300, 567, 600, 626 |
| MslI | CAYNNNNRTG | 1 cut(s) | 899 |
| MspI | CCGG | 4 cut(s) | 42, 84, 653, 734 |
| MspR9I | CCNGG | 3 cut(s) | 501, 653, 654 |
| MvaI | CCWGG | 1 cut(s) | 501 |
| MvnI | CGCG | 1 cut(s) | 77 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 401 |
| NciI | CCSGG | 2 cut(s) | 653, 654 |
| NdeII | GATC | 6 cut(s) | 144, 190, 274, 355, 613, 633 |
| NlaIII | CATG | 3 cut(s) | 368, 649, 731 |
| NlaIV | GGNNCC | 2 cut(s) | 505, 774 |
| NmuCI | GTSAC | 1 cut(s) | 86 |
| NspI | RCATGY | 1 cut(s) | 731 |
| OliI | CACNNNNGTG | 1 cut(s) | 899 |
| PciI | ACATGT | 1 cut(s) | 727 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 437 |
| PfeI | GAWTC | 4 cut(s) | 22, 436, 493, 757 |
| Ple19I | CGATCG | 1 cut(s) | 358 |
| PscI | ACATGT | 1 cut(s) | 727 |
| PsiI | TTATAA | 1 cut(s) | 290 |
| Psp124BI | GAGCTC | 1 cut(s) | 364 |
| Psp6I | CCWGG | 1 cut(s) | 499 |
| PspEI | GGTNACC | 1 cut(s) | 86 |
| PspFI | CCCAGC | 1 cut(s) | 130 |
| PspGI | CCWGG | 1 cut(s) | 499 |
| PspN4I | GGNNCC | 2 cut(s) | 505, 774 |
| PspPI | GGNCC | 1 cut(s) | 256 |
| PsuI | RGATCY | 1 cut(s) | 633 |
| PvuI | CGATCG | 1 cut(s) | 358 |
| RsaI | GTAC | 3 cut(s) | 443, 589, 911 |
| RsaNI | GTAC | 3 cut(s) | 442, 588, 910 |
| RseI | CAYNNNNRTG | 1 cut(s) | 899 |
| SacI | GAGCTC | 1 cut(s) | 364 |
| SaqAI | TTAA | 4 cut(s) | 300, 567, 600, 626 |
| Sau3AI | GATC | 6 cut(s) | 144, 190, 274, 355, 613, 633 |
| Sau96I | GGNCC | 1 cut(s) | 256 |
| ScrFI | CCNGG | 3 cut(s) | 501, 653, 654 |
| SduI | GDGCHC | 2 cut(s) | 364, 849 |
| SfaNI | GCATC | 1 cut(s) | 437 |
| SinI | GGWCC | 1 cut(s) | 256 |
| SmaI | CCCGGG | 1 cut(s) | 654 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 899 |
| SmlI | CTYRAG | 2 cut(s) | 716, 749 |
| SmoI | CTYRAG | 2 cut(s) | 716, 749 |
| Sse9I | AATT | 4 cut(s) | 266, 297, 460, 678 |
| SstI | GAGCTC | 1 cut(s) | 364 |
| StyD4I | CCNGG | 3 cut(s) | 499, 651, 652 |
| StyI | CCWWGG | 1 cut(s) | 518 |
| TaaI | ACNGT | 3 cut(s) | 253, 664, 792 |
| TaiI | ACGT | 2 cut(s) | 392, 585 |
| TaqI | TCGA | 6 cut(s) | 66, 109, 234, 354, 358, 843 |
| TasI | AATT | 4 cut(s) | 266, 297, 460, 678 |
| TfiI | GAWTC | 4 cut(s) | 22, 436, 493, 757 |
| Tru1I | TTAA | 4 cut(s) | 300, 567, 600, 626 |
| Tru9I | TTAA | 4 cut(s) | 300, 567, 600, 626 |
| TscAI | CASTG | 3 cut(s) | 258, 514, 906 |
| TseFI | GTSAC | 1 cut(s) | 86 |
| Tsp45I | GTSAC | 1 cut(s) | 86 |
| TspDTI | ATGAA | 1 cut(s) | 37 |
| TspGWI | ACGGA | 1 cut(s) | 429 |
| TspMI | CCCGGG | 1 cut(s) | 652 |
| TspRI | CASTG | 3 cut(s) | 258, 514, 906 |
| VpaK11BI | GGWCC | 1 cut(s) | 256 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 215 |
| XceI | RCATGY | 1 cut(s) | 731 |
| XmaI | CCCGGG | 1 cut(s) | 652 |