Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 149 |
| Acc36I | ACCTGC | 1 cut(s) | 149 |
| AccB1I | GGYRCC | 3 cut(s) | 161, 606, 983 |
| AccII | CGCG | 1 cut(s) | 640 |
| AciI | CCGC | 4 cut(s) | 155, 306, 670, 709 |
| AclWI | GGATC | 1 cut(s) | 254 |
| AcsI | RAATTY | 4 cut(s) | 172, 421, 858, 923 |
| AcuI | CTGAAG | 2 cut(s) | 360, 1035 |
| AfaI | GTAC | 3 cut(s) | 84, 573, 1132 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 277, 669, 696 |
| AflIII | ACRYGT | 1 cut(s) | 1066 |
| AgsI | TTSAA | 2 cut(s) | 505, 934 |
| AhlI | ACTAGT | 1 cut(s) | 35 |
| AjiI | CACGTC | 1 cut(s) | 644 |
| AjnI | CCWGG | 2 cut(s) | 195, 874 |
| AluBI | AGCT | 7 cut(s) | 89, 202, 331, 619, 623, 938, 1046 |
| AluI | AGCT | 7 cut(s) | 89, 202, 331, 619, 623, 938, 1046 |
| Alw21I | GWGCWC | 1 cut(s) | 560 |
| Alw26I | GTCTC | 1 cut(s) | 101 |
| Alw44I | GTGCAC | 1 cut(s) | 556 |
| AlwI | GGATC | 1 cut(s) | 254 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 202 |
| ApaLI | GTGCAC | 1 cut(s) | 556 |
| ApeKI | GCWGC | 1 cut(s) | 245 |
| ApoI | RAATTY | 4 cut(s) | 172, 421, 858, 923 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 422, 454 |
| AspLEI | GCGC | 1 cut(s) | 640 |
| AspS9I | GGNCC | 1 cut(s) | 520 |
| AsuHPI | GGTGA | 2 cut(s) | 266, 829 |
| AsuII | TTCGAA | 1 cut(s) | 274 |
| AsuNHI | GCTAGC | 1 cut(s) | 619 |
| AvaII | GGWCC | 1 cut(s) | 520 |
| BaeGI | GKGCMC | 1 cut(s) | 560 |
| BanI | GGYRCC | 3 cut(s) | 161, 606, 983 |
| BbsI | GAAGAC | 2 cut(s) | 479, 493 |
| Bbv12I | GWGCWC | 1 cut(s) | 560 |
| BbvI | GCAGC | 1 cut(s) | 257 |
| BccI | CCATC | 2 cut(s) | 648, 1030 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 588, 622 |
| BciT130I | CCWGG | 2 cut(s) | 197, 876 |
| BcoDI | GTCTC | 1 cut(s) | 101 |
| BcuI | ACTAGT | 1 cut(s) | 35 |
| BfaI | CTAG | 5 cut(s) | 26, 36, 362, 441, 620 |
| BfmI | CTRYAG | 1 cut(s) | 716 |
| BfuAI | ACCTGC | 1 cut(s) | 149 |
| BisI | GCNGC | 2 cut(s) | 156, 246 |
| BlsI | GCNGC | 2 cut(s) | 157, 247 |
| Bme1390I | CCNGG | 2 cut(s) | 197, 876 |
| Bme18I | GGWCC | 1 cut(s) | 520 |
| BmgBI | CACGTC | 1 cut(s) | 644 |
| BmgT120I | GGNCC | 1 cut(s) | 520 |
| BmiI | GGNNCC | 7 cut(s) | 163, 289, 521, 608, 686, 701, 985 |
| BmrFI | CCNGG | 2 cut(s) | 197, 876 |
| BmsI | GCATC | 6 cut(s) | 391, 455, 720, 750, 810, 1096 |
| BmtI | GCTAGC | 1 cut(s) | 623 |
| BpiI | GAAGAC | 2 cut(s) | 479, 493 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1108, 1140 |
| BpmI | CTGGAG | 2 cut(s) | 306, 990 |
| Bpu10I | CCTNAGC | 1 cut(s) | 332 |
| Bpu14I | TTCGAA | 1 cut(s) | 274 |
| BpuEI | CTTGAG | 1 cut(s) | 677 |
| BsaI | GGTCTC | 1 cut(s) | 101 |
| BsaJI | CCNNGG | 1 cut(s) | 41 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 277, 669, 696 |
| Bse3DI | GCAATG | 4 cut(s) | 165, 186, 291, 356 |
| BseBI | CCWGG | 2 cut(s) | 197, 876 |
| BseDI | CCNNGG | 1 cut(s) | 41 |
| BseGI | GGATG | 4 cut(s) | 101, 382, 678, 765 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 277, 669, 696 |
| BseMI | GCAATG | 4 cut(s) | 165, 186, 291, 356 |
| BseRI | GAGGAG | 1 cut(s) | 712 |
| BseSI | GKGCMC | 1 cut(s) | 560 |
| BseXI | GCAGC | 1 cut(s) | 257 |
| BseYI | CCCAGC | 1 cut(s) | 977 |
| BsgI | GTGCAG | 1 cut(s) | 866 |
| Bsh1236I | CGCG | 1 cut(s) | 640 |
| Bsh1285I | CGRYCG | 1 cut(s) | 952 |
| BshNI | GGYRCC | 3 cut(s) | 161, 606, 983 |
| BsiEI | CGRYCG | 1 cut(s) | 952 |
| BsiHKAI | GWGCWC | 1 cut(s) | 560 |
| BslFI | GGGAC | 2 cut(s) | 533, 564 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 277, 669, 696 |
| BsmAI | GTCTC | 1 cut(s) | 101 |
| BsmFI | GGGAC | 2 cut(s) | 533, 564 |
| BsmI | GAATGC | 1 cut(s) | 929 |
| Bso31I | GGTCTC | 1 cut(s) | 101 |
| Bsp119I | TTCGAA | 1 cut(s) | 274 |
| Bsp1286I | GDGCHC | 1 cut(s) | 560 |
| Bsp1407I | TGTACA | 2 cut(s) | 82, 571 |
| Bsp143I | GATC | 1 cut(s) | 259 |
| BspACI | CCGC | 4 cut(s) | 155, 306, 670, 709 |
| BspFNI | CGCG | 1 cut(s) | 640 |
| BspHI | TCATGA | 1 cut(s) | 564 |
| BspLI | GGNNCC | 7 cut(s) | 163, 289, 521, 608, 686, 701, 985 |
| BspMAI | CTGCAG | 1 cut(s) | 720 |
| BspMI | ACCTGC | 1 cut(s) | 149 |
| BspOI | GCTAGC | 1 cut(s) | 623 |
| BspPI | GGATC | 1 cut(s) | 254 |
| BspT104I | TTCGAA | 1 cut(s) | 274 |
| BspT107I | GGYRCC | 3 cut(s) | 161, 606, 983 |
| BspTNI | GGTCTC | 1 cut(s) | 101 |
| BsrDI | GCAATG | 4 cut(s) | 165, 186, 291, 356 |
| BsrGI | TGTACA | 2 cut(s) | 82, 571 |
| BssECI | CCNNGG | 1 cut(s) | 41 |
| BssMI | GATC | 1 cut(s) | 259 |
| BssT1I | CCWWGG | 1 cut(s) | 41 |
| Bst2UI | CCWGG | 2 cut(s) | 197, 876 |
| Bst4CI | ACNGT | 3 cut(s) | 254, 476, 555 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 404, 425 |
| BstAUI | TGTACA | 2 cut(s) | 82, 571 |
| BstBI | TTCGAA | 1 cut(s) | 274 |
| BstC8I | GCNNGC | 3 cut(s) | 329, 621, 1105 |
| BstDEI | CTNAG | 1 cut(s) | 332 |
| BstF5I | GGATG | 4 cut(s) | 101, 382, 678, 765 |
| BstFNI | CGCG | 1 cut(s) | 640 |
| BstHHI | GCGC | 1 cut(s) | 640 |
| BstKTI | GATC | 1 cut(s) | 262 |
| BstMAI | GTCTC | 1 cut(s) | 101 |
| BstMBI | GATC | 1 cut(s) | 259 |
| BstMCI | CGRYCG | 1 cut(s) | 952 |
| BstNI | CCWGG | 2 cut(s) | 197, 876 |
| BstNSI | RCATGY | 1 cut(s) | 1070 |
| BstSCI | CCNGG | 2 cut(s) | 195, 874 |
| BstSFI | CTRYAG | 1 cut(s) | 716 |
| BstSLI | GKGCMC | 1 cut(s) | 560 |
| BstUI | CGCG | 1 cut(s) | 640 |
| BstV1I | GCAGC | 1 cut(s) | 257 |
| BstV2I | GAAGAC | 2 cut(s) | 479, 493 |
| BstX2I | RGATCY | 1 cut(s) | 259 |
| BstYI | RGATCY | 1 cut(s) | 259 |
| BtrI | CACGTC | 1 cut(s) | 644 |
| BtsCI | GGATG | 4 cut(s) | 101, 382, 678, 765 |
| BveI | ACCTGC | 1 cut(s) | 149 |
| Cac8I | GCNNGC | 3 cut(s) | 329, 621, 1105 |
| CaiI | CAGNNNCTG | 1 cut(s) | 202 |
| CciI | TCATGA | 1 cut(s) | 564 |
| CfoI | GCGC | 1 cut(s) | 640 |
| Cfr13I | GGNCC | 1 cut(s) | 520 |
| Csp6I | GTAC | 3 cut(s) | 83, 572, 1131 |
| CviAII | CATG | 5 cut(s) | 565, 664, 808, 1067, 1120 |
| CviQI | GTAC | 3 cut(s) | 83, 572, 1131 |
| DdeI | CTNAG | 1 cut(s) | 332 |
| DpnI | GATC | 1 cut(s) | 261 |
| DpnII | GATC | 1 cut(s) | 259 |
| EciI | GGCGGA | 1 cut(s) | 685 |
| Eco130I | CCWWGG | 1 cut(s) | 41 |
| Eco31I | GGTCTC | 1 cut(s) | 101 |
| Eco47I | GGWCC | 1 cut(s) | 520 |
| Eco57I | CTGAAG | 2 cut(s) | 360, 1035 |
| EcoRII | CCWGG | 2 cut(s) | 195, 874 |
| EcoT14I | CCWWGG | 1 cut(s) | 41 |
| EcoT22I | ATGCAT | 1 cut(s) | 1077 |
| ErhI | CCWWGG | 1 cut(s) | 41 |
| FaeI | CATG | 5 cut(s) | 568, 667, 811, 1070, 1123 |
| FaqI | GGGAC | 2 cut(s) | 533, 564 |
| FatI | CATG | 5 cut(s) | 564, 663, 807, 1066, 1119 |
| Fnu4HI | GCNGC | 2 cut(s) | 156, 246 |
| FokI | GGATG | 4 cut(s) | 88, 369, 685, 772 |
| Fsp4HI | GCNGC | 2 cut(s) | 156, 246 |
| FspBI | CTAG | 5 cut(s) | 26, 36, 362, 441, 620 |
| GlaI | GCGC | 1 cut(s) | 639 |
| GluI | GCNGC | 2 cut(s) | 156, 246 |
| GsaI | CCCAGC | 1 cut(s) | 981 |
| GsuI | CTGGAG | 2 cut(s) | 306, 990 |
| HhaI | GCGC | 1 cut(s) | 640 |
| Hin1II | CATG | 5 cut(s) | 568, 667, 811, 1070, 1123 |
| Hin6I | GCGC | 1 cut(s) | 638 |
| HinP1I | GCGC | 1 cut(s) | 638 |
| HincII | GTYRAC | 1 cut(s) | 23 |
| HindII | GTYRAC | 1 cut(s) | 23 |
| HinfI | GANTC | 4 cut(s) | 211, 437, 508, 600 |
| HphI | GGTGA | 2 cut(s) | 266, 829 |
| Hpy166II | GTNNAC | 3 cut(s) | 23, 558, 804 |
| Hpy188I | TCNGA | 3 cut(s) | 130, 374, 771 |
| Hpy188III | TCNNGA | 9 cut(s) | 71, 386, 505, 565, 597, 682, 694, 969, 1013 |
| Hpy8I | GTNNAC | 3 cut(s) | 23, 558, 804 |
| Hpy99I | CGWCG | 1 cut(s) | 645 |
| HpyAV | CCTTC | 5 cut(s) | 281, 335, 526, 718, 1010 |
| HpyCH4III | ACNGT | 3 cut(s) | 254, 476, 555 |
| HpyCH4IV | ACGT | 1 cut(s) | 643 |
| HpyF3I | CTNAG | 1 cut(s) | 332 |
| HpySE526I | ACGT | 1 cut(s) | 643 |
| Hsp92II | CATG | 5 cut(s) | 568, 667, 811, 1070, 1123 |
| HspAI | GCGC | 1 cut(s) | 638 |
| Kzo9I | GATC | 1 cut(s) | 259 |
| LmnI | GCTCC | 3 cut(s) | 199, 287, 699 |
| Lsp1109I | GCAGC | 1 cut(s) | 257 |
| LweI | GCATC | 6 cut(s) | 391, 455, 720, 750, 810, 1096 |
| MaeI | CTAG | 5 cut(s) | 26, 36, 362, 441, 620 |
| MaeII | ACGT | 1 cut(s) | 643 |
| MaeIII | GTNAC | 3 cut(s) | 31, 114, 878 |
| MalI | GATC | 1 cut(s) | 261 |
| MboI | GATC | 1 cut(s) | 259 |
| MboII | GAAGA | 5 cut(s) | 269, 479, 493, 733, 1045 |
| MflI | RGATCY | 1 cut(s) | 259 |
| MhlI | GDGCHC | 1 cut(s) | 560 |
| MluCI | AATT | 8 cut(s) | 78, 172, 222, 317, 421, 858, 895, 923 |
| MlyI | GAGTC | 2 cut(s) | 446, 502 |
| MnlI | CCTC | 5 cut(s) | 136, 604, 690, 701, 713 |
| Mph1103I | ATGCAT | 1 cut(s) | 1077 |
| MseI | TTAA | 2 cut(s) | 351, 894 |
| MslI | CAYNNNNRTG | 3 cut(s) | 387, 563, 652 |
| MspR9I | CCNGG | 2 cut(s) | 197, 876 |
| Mva1269I | GAATGC | 1 cut(s) | 929 |
| MvaI | CCWGG | 2 cut(s) | 197, 876 |
| MvnI | CGCG | 1 cut(s) | 640 |
| NdeII | GATC | 1 cut(s) | 259 |
| NheI | GCTAGC | 1 cut(s) | 619 |
| NlaIII | CATG | 5 cut(s) | 568, 667, 811, 1070, 1123 |
| NlaIV | GGNNCC | 7 cut(s) | 163, 289, 521, 608, 686, 701, 985 |
| NmuCI | GTSAC | 1 cut(s) | 878 |
| NsiI | ATGCAT | 1 cut(s) | 1077 |
| NspI | RCATGY | 1 cut(s) | 1070 |
| NspV | TTCGAA | 1 cut(s) | 274 |
| PagI | TCATGA | 1 cut(s) | 564 |
| PaqCI | CACCTGC | 1 cut(s) | 149 |
| PciI | ACATGT | 1 cut(s) | 1066 |
| PctI | GAATGC | 1 cut(s) | 929 |
| PfeI | GAWTC | 2 cut(s) | 211, 600 |
| PkrI | GCNGC | 2 cut(s) | 157, 247 |
| PleI | GAGTC | 2 cut(s) | 445, 502 |
| PpsI | GAGTC | 2 cut(s) | 445, 502 |
| PscI | ACATGT | 1 cut(s) | 1066 |
| Psp6I | CCWGG | 2 cut(s) | 195, 874 |
| PspFI | CCCAGC | 1 cut(s) | 977 |
| PspGI | CCWGG | 2 cut(s) | 195, 874 |
| PspN4I | GGNNCC | 7 cut(s) | 163, 289, 521, 608, 686, 701, 985 |
| PspPI | GGNCC | 1 cut(s) | 520 |
| PsrI | GAACNNNNNNTAC | 1 cut(s) | 1123 |
| PstI | CTGCAG | 1 cut(s) | 720 |
| PstNI | CAGNNNCTG | 1 cut(s) | 202 |
| PsuI | RGATCY | 1 cut(s) | 259 |
| RsaI | GTAC | 3 cut(s) | 84, 573, 1132 |
| RsaNI | GTAC | 3 cut(s) | 83, 572, 1131 |
| RseI | CAYNNNNRTG | 3 cut(s) | 387, 563, 652 |
| SaqAI | TTAA | 2 cut(s) | 351, 894 |
| SatI | GCNGC | 2 cut(s) | 156, 246 |
| Sau3AI | GATC | 1 cut(s) | 259 |
| Sau96I | GGNCC | 1 cut(s) | 520 |
| SchI | GAGTC | 2 cut(s) | 446, 502 |
| ScrFI | CCNGG | 2 cut(s) | 197, 876 |
| SduI | GDGCHC | 1 cut(s) | 560 |
| SfaNI | GCATC | 6 cut(s) | 391, 455, 720, 750, 810, 1096 |
| SfcI | CTRYAG | 1 cut(s) | 716 |
| SfuI | TTCGAA | 1 cut(s) | 274 |
| SinI | GGWCC | 1 cut(s) | 520 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 387, 563, 652 |
| SmlI | CTYRAG | 1 cut(s) | 692 |
| SmoI | CTYRAG | 1 cut(s) | 692 |
| SpeI | ACTAGT | 1 cut(s) | 35 |
| Sse9I | AATT | 8 cut(s) | 78, 172, 222, 317, 421, 858, 895, 923 |
| SsiI | CCGC | 4 cut(s) | 155, 306, 670, 709 |
| SspI | AATATT | 1 cut(s) | 301 |
| SspMI | CTAG | 5 cut(s) | 26, 36, 362, 441, 620 |
| StyD4I | CCNGG | 2 cut(s) | 195, 874 |
| StyI | CCWWGG | 1 cut(s) | 41 |
| TaaI | ACNGT | 3 cut(s) | 254, 476, 555 |
| TaiI | ACGT | 1 cut(s) | 646 |
| TaqI | TCGA | 3 cut(s) | 274, 948, 1126 |
| TaqII | GACCGA | 1 cut(s) | 966 |
| TasI | AATT | 8 cut(s) | 78, 172, 222, 317, 421, 858, 895, 923 |
| TatI | WGTACW | 3 cut(s) | 82, 571, 1130 |
| TauI | GCSGC | 1 cut(s) | 158 |
| TfiI | GAWTC | 2 cut(s) | 211, 600 |
| Tru1I | TTAA | 2 cut(s) | 351, 894 |
| Tru9I | TTAA | 2 cut(s) | 351, 894 |
| TseFI | GTSAC | 1 cut(s) | 878 |
| TseI | GCWGC | 1 cut(s) | 245 |
| Tsp45I | GTSAC | 1 cut(s) | 878 |
| TspDTI | ATGAA | 8 cut(s) | 75, 150, 197, 224, 327, 553, 603, 1048 |
| VneI | GTGCAC | 1 cut(s) | 556 |
| VpaK11BI | GGWCC | 1 cut(s) | 520 |
| XapI | RAATTY | 4 cut(s) | 172, 421, 858, 923 |
| XceI | RCATGY | 1 cut(s) | 1070 |
| XspI | CTAG | 5 cut(s) | 26, 36, 362, 441, 620 |
| Zsp2I | ATGCAT | 1 cut(s) | 1077 |