Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000452

Physical Location & Seq

Genomic Coordinates Forward (+)

7935370 .. 7935711

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0090500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGATATGTGAGCTGCTGGCTATTAGAGAAGGTATGGATCATCTTTTCTCATTACAGTTACATAATGTTGTAATCGAAAGTGACTGCTTAGAAGTAGTTAATGAAGTTTCCAGCCCTCAATATGAGTTACTAGCCAATGGAGGTTTAATTGATGATATAAAACAAAGTTGGAGAATGCTGCAAGGTGTGAAAATTCAACACACTCCTAGATCATGTAATGCGGTGGCTCACCGCCTAGCTGCTTTAGGTTTTGAGGCAGATCAAGGTTTTGTTTGGTTTGAACAAGCACCCGAAGATATTCGAGATGTGCTTCTACATGATTGTAATGATCAACTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

113

Amino Acids

12.76

Weight (kDa)

4.56

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	3 - 81	1.9e-12	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000452)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	221, 232
AclWI	GGATC	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	197, 281
AluBI	AGCT	2 cut(s)	13, 239
AluI	AGCT	2 cut(s)	13, 239
AlwI	GGATC	1 cut(s)	45
ApeKI	GCWGC	3 cut(s)	13, 178, 239
ApoI	RAATTY	1 cut(s)	192
Asp700I	GAANNNNTTC	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	165, 226
BclI	TGATCA	1 cut(s)	328
BfaI	CTAG	3 cut(s)	131, 207, 236
BisI	GCNGC	3 cut(s)	14, 179, 240
BlsI	GCNGC	3 cut(s)	15, 180, 241
BseXI	GCAGC	2 cut(s)	165, 226
BsmI	GAATGC	1 cut(s)	180
Bsp143I	GATC	4 cut(s)	37, 209, 259, 328
BspACI	CCGC	2 cut(s)	221, 232
BspPI	GGATC	1 cut(s)	45
BssMI	GATC	4 cut(s)	37, 209, 259, 328
Bst4CI	ACNGT	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	2 cut(s)	88, 335
BstKTI	GATC	4 cut(s)	40, 212, 262, 331
BstMBI	GATC	4 cut(s)	37, 209, 259, 328
BstV1I	GCAGC	2 cut(s)	165, 226
Cac8I	GCNNGC	1 cut(s)	18
CviAII	CATG	2 cut(s)	213, 317
CviJI	RGCY	6 cut(s)	13, 20, 114, 134, 227, 239
CviKI_1	RGCY	6 cut(s)	13, 20, 114, 134, 227, 239
DdeI	CTNAG	2 cut(s)	88, 335
DpnI	GATC	4 cut(s)	39, 211, 261, 330
DpnII	GATC	4 cut(s)	37, 209, 259, 328
FaeI	CATG	2 cut(s)	216, 320
FaiI	YATR	7 cut(s)	7, 35, 63, 123, 158, 214, 318
FatI	CATG	2 cut(s)	212, 316
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	14, 179, 240
Fsp4HI	GCNGC	3 cut(s)	14, 179, 240
FspBI	CTAG	3 cut(s)	131, 207, 236
GluI	GCNGC	3 cut(s)	14, 179, 240
Hin1II	CATG	2 cut(s)	216, 320
HphI	GGTGA	1 cut(s)	221
Hpy188III	TCNNGA	1 cut(s)	302
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	181
HpyF3I	CTNAG	2 cut(s)	88, 335
Hsp92II	CATG	2 cut(s)	216, 320
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	4 cut(s)	37, 209, 259, 328
LpnPI	CCDG	2 cut(s)	2, 124
Lsp1109I	GCAGC	2 cut(s)	165, 226
MaeI	CTAG	3 cut(s)	131, 207, 236
MaeIII	GTNAC	3 cut(s)	57, 80, 126
MalI	GATC	4 cut(s)	39, 211, 261, 330
MboI	GATC	4 cut(s)	37, 209, 259, 328
MboII	GAAGA	1 cut(s)	305
MluCI	AATT	2 cut(s)	147, 192
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	3 cut(s)	126, 134, 247
MroXI	GAANNNNTTC	1 cut(s)	297
MseI	TTAA	2 cut(s)	99, 146
Mva1269I	GAATGC	1 cut(s)	180
NdeII	GATC	4 cut(s)	37, 209, 259, 328
NlaIII	CATG	2 cut(s)	216, 320
NmuCI	GTSAC	1 cut(s)	80
PctI	GAATGC	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	297
PkrI	GCNGC	3 cut(s)	15, 180, 241
SaqAI	TTAA	2 cut(s)	99, 146
SatI	GCNGC	3 cut(s)	14, 179, 240
Sau3AI	GATC	4 cut(s)	37, 209, 259, 328
SetI	ASST	7 cut(s)	15, 34, 145, 187, 241, 250, 268
Sse9I	AATT	2 cut(s)	147, 192
SsiI	CCGC	2 cut(s)	221, 232
SspMI	CTAG	3 cut(s)	131, 207, 236
TaaI	ACNGT	1 cut(s)	57
TaqI	TCGA	2 cut(s)	75, 301
TasI	AATT	2 cut(s)	147, 192
Tru1I	TTAA	2 cut(s)	99, 146
Tru9I	TTAA	2 cut(s)	99, 146
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	3 cut(s)	13, 178, 239
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	117
XapI	RAATTY	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	3 cut(s)	131, 207, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.