Homeodomain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 850 |
| AccI | GTMKAC | 4 cut(s) | 72, 244, 260, 1105 |
| AccII | CGCG | 1 cut(s) | 218 |
| AciI | CCGC | 1 cut(s) | 408 |
| AclWI | GGATC | 3 cut(s) | 15, 547, 586 |
| AcsI | RAATTY | 5 cut(s) | 461, 702, 748, 949, 981 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 489 |
| AgsI | TTSAA | 6 cut(s) | 352, 955, 1114, 1134, 1160, 1172 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 298, 330, 972, 1004 |
| AluBI | AGCT | 8 cut(s) | 361, 430, 479, 517, 551, 896, 1094, 1176 |
| AluI | AGCT | 8 cut(s) | 361, 430, 479, 517, 551, 896, 1094, 1176 |
| Alw21I | GWGCWC | 1 cut(s) | 553 |
| Alw26I | GTCTC | 3 cut(s) | 81, 889, 1054 |
| AlwI | GGATC | 3 cut(s) | 15, 547, 586 |
| AoxI | GGCC | 1 cut(s) | 302 |
| ApoI | RAATTY | 5 cut(s) | 461, 702, 748, 949, 981 |
| AseI | ATTAAT | 1 cut(s) | 468 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 276 |
| AspS9I | GGNCC | 1 cut(s) | 302 |
| AsuHPI | GGTGA | 3 cut(s) | 377, 488, 1238 |
| AsuII | TTCGAA | 1 cut(s) | 132 |
| BanI | GGYRCC | 1 cut(s) | 850 |
| BanII | GRGCYC | 2 cut(s) | 205, 553 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 264, 296 |
| Bbv12I | GWGCWC | 1 cut(s) | 553 |
| BccI | CCATC | 3 cut(s) | 167, 919, 1075 |
| BciVI | GTATCC | 3 cut(s) | 108, 144, 836 |
| BclI | TGATCA | 3 cut(s) | 742, 1006, 1027 |
| BcoDI | GTCTC | 3 cut(s) | 81, 889, 1054 |
| BfaI | CTAG | 3 cut(s) | 362, 653, 1208 |
| BfuI | GTATCC | 3 cut(s) | 108, 144, 836 |
| BmgT120I | GGNCC | 1 cut(s) | 302 |
| BmiI | GGNNCC | 2 cut(s) | 204, 852 |
| BmsI | GCATC | 1 cut(s) | 1143 |
| BoxI | GACNNNNGTC | 2 cut(s) | 250, 1046 |
| Bpu14I | TTCGAA | 1 cut(s) | 132 |
| BsaAI | YACGTR | 1 cut(s) | 404 |
| BsaBI | GATNNNNATC | 2 cut(s) | 65, 1085 |
| BsaI | GGTCTC | 1 cut(s) | 81 |
| BsaJI | CCNNGG | 1 cut(s) | 1222 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 489 |
| Bse1I | ACTGG | 1 cut(s) | 268 |
| Bse3DI | GCAATG | 2 cut(s) | 457, 657 |
| Bse8I | GATNNNNATC | 2 cut(s) | 65, 1085 |
| BseDI | CCNNGG | 1 cut(s) | 1222 |
| BseGI | GGATG | 1 cut(s) | 695 |
| BseJI | GATNNNNATC | 2 cut(s) | 65, 1085 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 489 |
| BseMI | GCAATG | 2 cut(s) | 457, 657 |
| BseMII | CTCAG | 1 cut(s) | 1065 |
| BseNI | ACTGG | 1 cut(s) | 268 |
| Bsh1236I | CGCG | 1 cut(s) | 218 |
| BshFI | GGCC | 1 cut(s) | 304 |
| BshNI | GGYRCC | 1 cut(s) | 850 |
| BsiHKAI | GWGCWC | 1 cut(s) | 553 |
| BslFI | GGGAC | 1 cut(s) | 1204 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 489 |
| BsmAI | GTCTC | 3 cut(s) | 81, 889, 1054 |
| BsmBI | CGTCTC | 1 cut(s) | 1054 |
| BsmFI | GGGAC | 1 cut(s) | 1204 |
| BsnI | GGCC | 1 cut(s) | 304 |
| Bso31I | GGTCTC | 1 cut(s) | 81 |
| Bsp119I | TTCGAA | 1 cut(s) | 132 |
| Bsp1286I | GDGCHC | 2 cut(s) | 205, 553 |
| Bsp143I | GATC | 9 cut(s) | 7, 45, 213, 539, 578, 742, 1006, 1027, 1123 |
| BspACI | CCGC | 1 cut(s) | 408 |
| BspANI | GGCC | 1 cut(s) | 304 |
| BspCNI | CTCAG | 1 cut(s) | 1064 |
| BspFNI | CGCG | 1 cut(s) | 218 |
| BspHI | TCATGA | 1 cut(s) | 57 |
| BspLI | GGNNCC | 2 cut(s) | 204, 852 |
| BspPI | GGATC | 3 cut(s) | 15, 547, 586 |
| BspQI | GCTCTTC | 1 cut(s) | 960 |
| BspT104I | TTCGAA | 1 cut(s) | 132 |
| BspT107I | GGYRCC | 1 cut(s) | 850 |
| BspTNI | GGTCTC | 1 cut(s) | 81 |
| BsrDI | GCAATG | 2 cut(s) | 457, 657 |
| BsrI | ACTGG | 1 cut(s) | 268 |
| BssECI | CCNNGG | 1 cut(s) | 1222 |
| BssMI | GATC | 9 cut(s) | 7, 45, 213, 539, 578, 742, 1006, 1027, 1123 |
| BssNAI | GTATAC | 2 cut(s) | 261, 1106 |
| BssT1I | CCWWGG | 1 cut(s) | 1222 |
| Bst1107I | GTATAC | 2 cut(s) | 261, 1106 |
| Bst4CI | ACNGT | 3 cut(s) | 77, 83, 1016 |
| Bst6I | CTCTTC | 2 cut(s) | 960, 1206 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 706 |
| BstBAI | YACGTR | 1 cut(s) | 404 |
| BstBI | TTCGAA | 1 cut(s) | 132 |
| BstC8I | GCNNGC | 2 cut(s) | 937, 1197 |
| BstDEI | CTNAG | 1 cut(s) | 1051 |
| BstF5I | GGATG | 1 cut(s) | 695 |
| BstFNI | CGCG | 1 cut(s) | 218 |
| BstKTI | GATC | 9 cut(s) | 10, 48, 216, 542, 581, 745, 1009, 1030, 1126 |
| BstMAI | GTCTC | 3 cut(s) | 81, 889, 1054 |
| BstMBI | GATC | 9 cut(s) | 7, 45, 213, 539, 578, 742, 1006, 1027, 1123 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 706, 1192 |
| BstNSI | RCATGY | 1 cut(s) | 700 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 250, 1046 |
| BstSNI | TACGTA | 1 cut(s) | 404 |
| BstUI | CGCG | 1 cut(s) | 218 |
| BstX2I | RGATCY | 2 cut(s) | 7, 578 |
| BstYI | RGATCY | 2 cut(s) | 7, 578 |
| BstZ17I | GTATAC | 2 cut(s) | 261, 1106 |
| BsuI | GTATCC | 3 cut(s) | 108, 144, 836 |
| BsuRI | GGCC | 1 cut(s) | 304 |
| BtsCI | GGATG | 1 cut(s) | 695 |
| Cac8I | GCNNGC | 2 cut(s) | 937, 1197 |
| CciI | TCATGA | 1 cut(s) | 57 |
| Cfr13I | GGNCC | 1 cut(s) | 302 |
| CviAII | CATG | 6 cut(s) | 58, 111, 568, 697, 847, 996 |
| DdeI | CTNAG | 1 cut(s) | 1051 |
| DpnI | GATC | 9 cut(s) | 9, 47, 215, 541, 580, 744, 1008, 1029, 1125 |
| DpnII | GATC | 9 cut(s) | 7, 45, 213, 539, 578, 742, 1006, 1027, 1123 |
| DraI | TTTAAA | 2 cut(s) | 232, 391 |
| Eam1104I | CTCTTC | 2 cut(s) | 960, 1206 |
| EarI | CTCTTC | 2 cut(s) | 960, 1206 |
| Ecl136II | GAGCTC | 1 cut(s) | 551 |
| Eco105I | TACGTA | 1 cut(s) | 404 |
| Eco130I | CCWWGG | 1 cut(s) | 1222 |
| Eco24I | GRGCYC | 2 cut(s) | 205, 553 |
| Eco31I | GGTCTC | 1 cut(s) | 81 |
| Eco32I | GATATC | 1 cut(s) | 718 |
| Eco53kI | GAGCTC | 1 cut(s) | 551 |
| EcoICRI | GAGCTC | 1 cut(s) | 551 |
| EcoRI | GAATTC | 1 cut(s) | 461 |
| EcoRV | GATATC | 1 cut(s) | 718 |
| EcoT14I | CCWWGG | 1 cut(s) | 1222 |
| EcoT38I | GRGCYC | 2 cut(s) | 205, 553 |
| ErhI | CCWWGG | 1 cut(s) | 1222 |
| Esp3I | CGTCTC | 1 cut(s) | 1054 |
| FaeI | CATG | 6 cut(s) | 61, 114, 571, 700, 850, 999 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 301, 333 |
| FaqI | GGGAC | 1 cut(s) | 1204 |
| FatI | CATG | 6 cut(s) | 57, 110, 567, 696, 846, 995 |
| FbaI | TGATCA | 3 cut(s) | 742, 1006, 1027 |
| FblI | GTMKAC | 4 cut(s) | 72, 244, 260, 1105 |
| FokI | GGATG | 1 cut(s) | 702 |
| FriOI | GRGCYC | 2 cut(s) | 205, 553 |
| FspBI | CTAG | 3 cut(s) | 362, 653, 1208 |
| HaeIII | GGCC | 1 cut(s) | 304 |
| Hin1II | CATG | 6 cut(s) | 61, 114, 571, 700, 850, 999 |
| HindIII | AAGCTT | 1 cut(s) | 1174 |
| HinfI | GANTC | 3 cut(s) | 348, 493, 955 |
| HphI | GGTGA | 3 cut(s) | 377, 488, 1238 |
| Hpy166II | GTNNAC | 4 cut(s) | 73, 245, 261, 1106 |
| Hpy188I | TCNGA | 6 cut(s) | 124, 170, 325, 769, 914, 1054 |
| Hpy188III | TCNNGA | 4 cut(s) | 34, 58, 584, 740 |
| Hpy8I | GTNNAC | 4 cut(s) | 73, 245, 261, 1106 |
| Hpy99I | CGWCG | 1 cut(s) | 170 |
| HpyAV | CCTTC | 5 cut(s) | 362, 483, 1002, 1140, 1154 |
| HpyCH4III | ACNGT | 3 cut(s) | 77, 83, 1016 |
| HpyCH4IV | ACGT | 3 cut(s) | 118, 403, 1047 |
| HpyCH4V | TGCA | 3 cut(s) | 700, 709, 782 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 706, 1192 |
| HpyF3I | CTNAG | 1 cut(s) | 1051 |
| HpySE526I | ACGT | 3 cut(s) | 118, 403, 1047 |
| Hsp92II | CATG | 6 cut(s) | 61, 114, 571, 700, 850, 999 |
| Ksp22I | TGATCA | 3 cut(s) | 742, 1006, 1027 |
| Kzo9I | GATC | 9 cut(s) | 7, 45, 213, 539, 578, 742, 1006, 1027, 1123 |
| LguI | GCTCTTC | 1 cut(s) | 960 |
| LmnI | GCTCC | 2 cut(s) | 208, 419 |
| LpnPI | CCDG | 6 cut(s) | 47, 167, 249, 594, 867, 1209 |
| LweI | GCATC | 1 cut(s) | 1143 |
| MaeI | CTAG | 3 cut(s) | 362, 653, 1208 |
| MaeII | ACGT | 3 cut(s) | 118, 403, 1047 |
| MaeIII | GTNAC | 3 cut(s) | 77, 692, 811 |
| MalI | GATC | 9 cut(s) | 9, 47, 215, 541, 580, 744, 1008, 1029, 1125 |
| MboI | GATC | 9 cut(s) | 7, 45, 213, 539, 578, 742, 1006, 1027, 1123 |
| MboII | GAAGA | 6 cut(s) | 284, 728, 977, 1070, 1090, 1223 |
| MfeI | CAATTG | 1 cut(s) | 1109 |
| MflI | RGATCY | 2 cut(s) | 7, 578 |
| MhlI | GDGCHC | 2 cut(s) | 205, 553 |
| MmeI | TCCRAC | 2 cut(s) | 148, 818 |
| MnlI | CCTC | 6 cut(s) | 118, 365, 529, 735, 872, 1048 |
| MroXI | GAANNNNTTC | 1 cut(s) | 276 |
| MseI | TTAA | 8 cut(s) | 231, 330, 390, 426, 468, 623, 630, 1074 |
| MslI | CAYNNNNRTG | 1 cut(s) | 504 |
| MunI | CAATTG | 1 cut(s) | 1109 |
| MvnI | CGCG | 1 cut(s) | 218 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 706, 1192 |
| NdeII | GATC | 9 cut(s) | 7, 45, 213, 539, 578, 742, 1006, 1027, 1123 |
| NlaIII | CATG | 6 cut(s) | 61, 114, 571, 700, 850, 999 |
| NlaIV | GGNNCC | 2 cut(s) | 204, 852 |
| NmuCI | GTSAC | 1 cut(s) | 692 |
| NspI | RCATGY | 1 cut(s) | 700 |
| NspV | TTCGAA | 1 cut(s) | 132 |
| PagI | TCATGA | 1 cut(s) | 57 |
| PciSI | GCTCTTC | 1 cut(s) | 960 |
| PdmI | GAANNNNTTC | 1 cut(s) | 276 |
| PfeI | GAWTC | 3 cut(s) | 348, 493, 955 |
| Ppu21I | YACGTR | 1 cut(s) | 404 |
| PshAI | GACNNNNGTC | 2 cut(s) | 250, 1046 |
| PshBI | ATTAAT | 1 cut(s) | 468 |
| Psp124BI | GAGCTC | 1 cut(s) | 553 |
| PspN4I | GGNNCC | 2 cut(s) | 204, 852 |
| PspPI | GGNCC | 1 cut(s) | 302 |
| PsuI | RGATCY | 2 cut(s) | 7, 578 |
| RseI | CAYNNNNRTG | 1 cut(s) | 504 |
| SacI | GAGCTC | 1 cut(s) | 553 |
| SapI | GCTCTTC | 1 cut(s) | 960 |
| SaqAI | TTAA | 8 cut(s) | 231, 330, 390, 426, 468, 623, 630, 1074 |
| Sau3AI | GATC | 9 cut(s) | 7, 45, 213, 539, 578, 742, 1006, 1027, 1123 |
| Sau96I | GGNCC | 1 cut(s) | 302 |
| SduI | GDGCHC | 2 cut(s) | 205, 553 |
| SfaNI | GCATC | 1 cut(s) | 1143 |
| SfuI | TTCGAA | 1 cut(s) | 132 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 504 |
| SnaBI | TACGTA | 1 cut(s) | 404 |
| SsiI | CCGC | 1 cut(s) | 408 |
| SspMI | CTAG | 3 cut(s) | 362, 653, 1208 |
| SstI | GAGCTC | 1 cut(s) | 553 |
| StyI | CCWWGG | 1 cut(s) | 1222 |
| TaaI | ACNGT | 3 cut(s) | 77, 83, 1016 |
| TaiI | ACGT | 3 cut(s) | 121, 406, 1050 |
| TaqI | TCGA | 2 cut(s) | 132, 672 |
| TfiI | GAWTC | 3 cut(s) | 348, 493, 955 |
| Tru1I | TTAA | 8 cut(s) | 231, 330, 390, 426, 468, 623, 630, 1074 |
| Tru9I | TTAA | 8 cut(s) | 231, 330, 390, 426, 468, 623, 630, 1074 |
| TseFI | GTSAC | 1 cut(s) | 692 |
| Tsp45I | GTSAC | 1 cut(s) | 692 |
| TspDTI | ATGAA | 8 cut(s) | 46, 53, 303, 454, 486, 556, 742, 984 |
| VspI | ATTAAT | 1 cut(s) | 468 |
| XapI | RAATTY | 5 cut(s) | 461, 702, 748, 949, 981 |
| XceI | RCATGY | 1 cut(s) | 700 |
| XmiI | GTMKAC | 4 cut(s) | 72, 244, 260, 1105 |
| XmnI | GAANNNNTTC | 1 cut(s) | 276 |
| XspI | CTAG | 3 cut(s) | 362, 653, 1208 |