Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRRNT_2 | PF08263 | 37 - 75 | 6e-11 | Leucine rich repeat N-terminal domain |
| LRR_14 | PF23598 | 107 - 338 | 1.9e-09 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 269 - 325 | 3.4e-06 | Leucine rich repeat |
| LRR_8 | PF13855 | 342 - 400 | 2.9e-06 | Leucine rich repeat |
| LRR_8 | PF13855 | 608 - 668 | 4.6e-06 | Leucine rich repeat |
| LRR_14 | PF23598 | 707 - 790 | 2.7e-07 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 711 - 769 | 1.9e-10 | Leucine rich repeat |
| LRR_8 | PF13855 | 734 - 793 | 1.4e-10 | Leucine rich repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 2399 |
| AccI | GTMKAC | 2 cut(s) | 16, 2688 |
| AciI | CCGC | 2 cut(s) | 447, 1959 |
| AclWI | GGATC | 7 cut(s) | 308, 457, 1188, 1458, 1521, 1569, 1582 |
| AcoI | YGGCCR | 1 cut(s) | 608 |
| AcuI | CTGAAG | 2 cut(s) | 632, 2108 |
| AfaI | GTAC | 2 cut(s) | 1819, 2560 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 302, 467 |
| AflII | CTTAAG | 1 cut(s) | 1915 |
| AflIII | ACRYGT | 3 cut(s) | 279, 573, 1563 |
| AjnI | CCWGG | 4 cut(s) | 45, 503, 1531, 2646 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2066, 2098 |
| Alw21I | GWGCWC | 1 cut(s) | 1295 |
| Alw26I | GTCTC | 3 cut(s) | 2286, 2537, 2704 |
| AlwI | GGATC | 7 cut(s) | 308, 457, 1188, 1458, 1521, 1569, 1582 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2131 |
| Ama87I | CYCGRG | 1 cut(s) | 1142 |
| AoxI | GGCC | 4 cut(s) | 145, 608, 921, 2694 |
| ApeKI | GCWGC | 3 cut(s) | 198, 287, 939 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2670, 2702 |
| AseI | ATTAAT | 1 cut(s) | 702 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 984, 2121 |
| AspS9I | GGNCC | 6 cut(s) | 352, 833, 1352, 1920, 1984, 2456 |
| AsuII | TTCGAA | 1 cut(s) | 2716 |
| AvaI | CYCGRG | 1 cut(s) | 1142 |
| AvaII | GGWCC | 6 cut(s) | 352, 833, 1352, 1920, 1984, 2456 |
| BalI | TGGCCA | 1 cut(s) | 610 |
| BamHI | GGATCC | 1 cut(s) | 1574 |
| BanI | GGYRCC | 1 cut(s) | 2399 |
| BanII | GRGCYC | 3 cut(s) | 1295, 1539, 1909 |
| BbsI | GAAGAC | 3 cut(s) | 659, 1103, 1575 |
| Bbv12I | GWGCWC | 1 cut(s) | 1295 |
| BbvI | GCAGC | 3 cut(s) | 185, 274, 951 |
| BccI | CCATC | 4 cut(s) | 1528, 1879, 2480, 2522 |
| BceAI | ACGGC | 1 cut(s) | 2666 |
| BciT130I | CCWGG | 4 cut(s) | 47, 505, 1533, 2648 |
| BcoDI | GTCTC | 3 cut(s) | 2286, 2537, 2704 |
| BfaI | CTAG | 8 cut(s) | 872, 881, 1164, 1239, 1416, 1437, 1485, 2396 |
| BfrI | CTTAAG | 1 cut(s) | 1915 |
| BglII | AGATCT | 2 cut(s) | 883, 1477 |
| BisI | GCNGC | 3 cut(s) | 199, 288, 940 |
| BlsI | GCNGC | 3 cut(s) | 200, 289, 941 |
| Bme1390I | CCNGG | 4 cut(s) | 47, 505, 1533, 2648 |
| Bme18I | GGWCC | 6 cut(s) | 352, 833, 1352, 1920, 1984, 2456 |
| BmeT110I | CYCGRG | 1 cut(s) | 1142 |
| BmgT120I | GGNCC | 6 cut(s) | 352, 833, 1352, 1920, 1984, 2456 |
| BmiI | GGNNCC | 7 cut(s) | 88, 835, 1353, 1576, 1605, 2011, 2401 |
| BmrFI | CCNGG | 4 cut(s) | 47, 505, 1533, 2648 |
| BmsI | GCATC | 1 cut(s) | 2044 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1044 |
| BpiI | GAAGAC | 3 cut(s) | 659, 1103, 1575 |
| BpmI | CTGGAG | 3 cut(s) | 76, 116, 1515 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1017, 1289 |
| Bpu14I | TTCGAA | 1 cut(s) | 2716 |
| BpuEI | CTTGAG | 4 cut(s) | 580, 1049, 1063, 2481 |
| BsaBI | GATNNNNATC | 2 cut(s) | 678, 1302 |
| BsaI | GGTCTC | 1 cut(s) | 2537 |
| BsaJI | CCNNGG | 3 cut(s) | 1532, 1840, 2443 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1588, 1618 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 302, 467 |
| Bse1I | ACTGG | 2 cut(s) | 133, 1058 |
| Bse3DI | GCAATG | 1 cut(s) | 51 |
| Bse8I | GATNNNNATC | 2 cut(s) | 678, 1302 |
| BseBI | CCWGG | 4 cut(s) | 47, 505, 1533, 2648 |
| BseDI | CCNNGG | 3 cut(s) | 1532, 1840, 2443 |
| BseGI | GGATG | 5 cut(s) | 160, 918, 1261, 1674, 2656 |
| BseJI | GATNNNNATC | 2 cut(s) | 678, 1302 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 302, 467 |
| BseMI | GCAATG | 1 cut(s) | 51 |
| BseMII | CTCAG | 7 cut(s) | 370, 752, 1280, 1308, 1623, 2006, 2123 |
| BseNI | ACTGG | 2 cut(s) | 133, 1058 |
| BseXI | GCAGC | 3 cut(s) | 185, 274, 951 |
| BseYI | CCCAGC | 1 cut(s) | 2566 |
| BshFI | GGCC | 4 cut(s) | 147, 610, 923, 2696 |
| BshNI | GGYRCC | 1 cut(s) | 2399 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1295 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1142 |
| BsiSI | CCGG | 1 cut(s) | 1511 |
| BslFI | GGGAC | 2 cut(s) | 819, 1365 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 302, 467 |
| BsmAI | GTCTC | 3 cut(s) | 2286, 2537, 2704 |
| BsmFI | GGGAC | 2 cut(s) | 819, 1365 |
| BsmI | GAATGC | 2 cut(s) | 96, 1207 |
| BsnI | GGCC | 4 cut(s) | 147, 610, 923, 2696 |
| Bso31I | GGTCTC | 1 cut(s) | 2537 |
| BsoBI | CYCGRG | 1 cut(s) | 1142 |
| Bsp119I | TTCGAA | 1 cut(s) | 2716 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1295, 1539, 1909 |
| Bsp1407I | TGTACA | 1 cut(s) | 1817 |
| BspACI | CCGC | 2 cut(s) | 447, 1959 |
| BspANI | GGCC | 4 cut(s) | 147, 610, 923, 2696 |
| BspCNI | CTCAG | 7 cut(s) | 369, 751, 1281, 1307, 1624, 2005, 2124 |
| BspHI | TCATGA | 1 cut(s) | 1114 |
| BspLI | GGNNCC | 7 cut(s) | 88, 835, 1353, 1576, 1605, 2011, 2401 |
| BspPI | GGATC | 7 cut(s) | 308, 457, 1188, 1458, 1521, 1569, 1582 |
| BspQI | GCTCTTC | 2 cut(s) | 132, 1914 |
| BspT104I | TTCGAA | 1 cut(s) | 2716 |
| BspT107I | GGYRCC | 1 cut(s) | 2399 |
| BspTI | CTTAAG | 1 cut(s) | 1915 |
| BspTNI | GGTCTC | 1 cut(s) | 2537 |
| BsrDI | GCAATG | 1 cut(s) | 51 |
| BsrGI | TGTACA | 1 cut(s) | 1817 |
| BsrI | ACTGG | 2 cut(s) | 133, 1058 |
| BssECI | CCNNGG | 3 cut(s) | 1532, 1840, 2443 |
| BssNAI | GTATAC | 1 cut(s) | 17 |
| BssT1I | CCWWGG | 2 cut(s) | 1840, 2443 |
| Bst1107I | GTATAC | 1 cut(s) | 17 |
| Bst2UI | CCWGG | 4 cut(s) | 47, 505, 1533, 2648 |
| Bst4CI | ACNGT | 4 cut(s) | 1611, 1644, 1817, 2563 |
| Bst6I | CTCTTC | 3 cut(s) | 132, 723, 1914 |
| BstAFI | CTTAAG | 1 cut(s) | 1915 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 102 |
| BstAUI | TGTACA | 1 cut(s) | 1817 |
| BstBI | TTCGAA | 1 cut(s) | 2716 |
| BstC8I | GCNNGC | 2 cut(s) | 220, 626 |
| BstF5I | GGATG | 5 cut(s) | 160, 918, 1261, 1674, 2656 |
| BstMAI | GTCTC | 3 cut(s) | 2286, 2537, 2704 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 102, 1516, 1601, 2054 |
| BstNI | CCWGG | 4 cut(s) | 47, 505, 1533, 2648 |
| BstNSI | RCATGY | 6 cut(s) | 125, 222, 283, 577, 1336, 1567 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1044 |
| BstSCI | CCNGG | 4 cut(s) | 45, 503, 1531, 2646 |
| BstV1I | GCAGC | 3 cut(s) | 185, 274, 951 |
| BstV2I | GAAGAC | 3 cut(s) | 659, 1103, 1575 |
| BstX2I | RGATCY | 7 cut(s) | 449, 883, 1180, 1450, 1477, 1513, 1574 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2309 |
| BstYI | RGATCY | 7 cut(s) | 449, 883, 1180, 1450, 1477, 1513, 1574 |
| BstZ17I | GTATAC | 1 cut(s) | 17 |
| BsuRI | GGCC | 4 cut(s) | 147, 610, 923, 2696 |
| BtsCI | GGATG | 5 cut(s) | 160, 918, 1261, 1674, 2656 |
| BtsIMutI | CAGTG | 3 cut(s) | 635, 2462, 2568 |
| Cac8I | GCNNGC | 2 cut(s) | 220, 626 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2131 |
| CciI | TCATGA | 1 cut(s) | 1114 |
| Cfr13I | GGNCC | 6 cut(s) | 352, 833, 1352, 1920, 1984, 2456 |
| Csp6I | GTAC | 2 cut(s) | 1818, 2559 |
| CviQI | GTAC | 2 cut(s) | 1818, 2559 |
| DraI | TTTAAA | 2 cut(s) | 139, 1809 |
| EaeI | YGGCCR | 1 cut(s) | 608 |
| Eam1104I | CTCTTC | 3 cut(s) | 132, 723, 1914 |
| EarI | CTCTTC | 3 cut(s) | 132, 723, 1914 |
| Ecl136II | GAGCTC | 1 cut(s) | 1293 |
| Eco130I | CCWWGG | 2 cut(s) | 1840, 2443 |
| Eco147I | AGGCCT | 2 cut(s) | 147, 923 |
| Eco24I | GRGCYC | 3 cut(s) | 1295, 1539, 1909 |
| Eco31I | GGTCTC | 1 cut(s) | 2537 |
| Eco32I | GATATC | 1 cut(s) | 2307 |
| Eco47I | GGWCC | 6 cut(s) | 352, 833, 1352, 1920, 1984, 2456 |
| Eco53kI | GAGCTC | 1 cut(s) | 1293 |
| Eco57I | CTGAAG | 2 cut(s) | 632, 2108 |
| Eco88I | CYCGRG | 1 cut(s) | 1142 |
| EcoICRI | GAGCTC | 1 cut(s) | 1293 |
| EcoO109I | RGGNCCY | 1 cut(s) | 833 |
| EcoRI | GAATTC | 3 cut(s) | 1192, 2206, 2316 |
| EcoRII | CCWGG | 4 cut(s) | 45, 503, 1531, 2646 |
| EcoRV | GATATC | 1 cut(s) | 2307 |
| EcoT14I | CCWWGG | 2 cut(s) | 1840, 2443 |
| EcoT38I | GRGCYC | 3 cut(s) | 1295, 1539, 1909 |
| ErhI | CCWWGG | 2 cut(s) | 1840, 2443 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1209, 1241 |
| FaqI | GGGAC | 2 cut(s) | 819, 1365 |
| FauNDI | CATATG | 1 cut(s) | 2062 |
| FblI | GTMKAC | 2 cut(s) | 16, 2688 |
| Fnu4HI | GCNGC | 3 cut(s) | 199, 288, 940 |
| FokI | GGATG | 5 cut(s) | 167, 925, 1268, 1681, 2663 |
| FriOI | GRGCYC | 3 cut(s) | 1295, 1539, 1909 |
| Fsp4HI | GCNGC | 3 cut(s) | 199, 288, 940 |
| FspBI | CTAG | 8 cut(s) | 872, 881, 1164, 1239, 1416, 1437, 1485, 2396 |
| GluI | GCNGC | 3 cut(s) | 199, 288, 940 |
| GsaI | CCCAGC | 1 cut(s) | 2570 |
| GsuI | CTGGAG | 3 cut(s) | 76, 116, 1515 |
| HaeIII | GGCC | 4 cut(s) | 147, 610, 923, 2696 |
| HapII | CCGG | 1 cut(s) | 1511 |
| HindIII | AAGCTT | 1 cut(s) | 2243 |
| HpaII | CCGG | 1 cut(s) | 1511 |
| Hpy166II | GTNNAC | 4 cut(s) | 17, 1772, 2456, 2689 |
| Hpy8I | GTNNAC | 4 cut(s) | 17, 1772, 2456, 2689 |
| HpyAV | CCTTC | 3 cut(s) | 327, 899, 1812 |
| HpyCH4III | ACNGT | 4 cut(s) | 1611, 1644, 1817, 2563 |
| HpyCH4IV | ACGT | 3 cut(s) | 1108, 1325, 2361 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 102, 1516, 1601, 2054 |
| HpySE526I | ACGT | 3 cut(s) | 1108, 1325, 2361 |
| LguI | GCTCTTC | 2 cut(s) | 132, 1914 |
| LmnI | GCTCC | 3 cut(s) | 1609, 1651, 2009 |
| Lsp1109I | GCAGC | 3 cut(s) | 185, 274, 951 |
| LweI | GCATC | 1 cut(s) | 2044 |
| MaeI | CTAG | 8 cut(s) | 872, 881, 1164, 1239, 1416, 1437, 1485, 2396 |
| MaeII | ACGT | 3 cut(s) | 1108, 1325, 2361 |
| MaeIII | GTNAC | 4 cut(s) | 893, 1104, 1210, 1778 |
| MfeI | CAATTG | 1 cut(s) | 410 |
| MflI | RGATCY | 7 cut(s) | 449, 883, 1180, 1450, 1477, 1513, 1574 |
| MhlI | GDGCHC | 3 cut(s) | 1295, 1539, 1909 |
| MlsI | TGGCCA | 1 cut(s) | 610 |
| MluNI | TGGCCA | 1 cut(s) | 610 |
| MlyI | GAGTC | 5 cut(s) | 167, 415, 986, 1054, 2288 |
| MmeI | TCCRAC | 2 cut(s) | 64, 1646 |
| Mox20I | TGGCCA | 1 cut(s) | 610 |
| MroXI | GAANNNNTTC | 2 cut(s) | 984, 2121 |
| MscI | TGGCCA | 1 cut(s) | 610 |
| MslI | CAYNNNNRTG | 3 cut(s) | 860, 1254, 2523 |
| Msp20I | TGGCCA | 1 cut(s) | 610 |
| MspA1I | CMGCKG | 1 cut(s) | 447 |
| MspCI | CTTAAG | 1 cut(s) | 1915 |
| MspI | CCGG | 1 cut(s) | 1511 |
| MspR9I | CCNGG | 4 cut(s) | 47, 505, 1533, 2648 |
| MssI | GTTTAAAC | 1 cut(s) | 139 |
| MunI | CAATTG | 1 cut(s) | 410 |
| Mva1269I | GAATGC | 2 cut(s) | 96, 1207 |
| MvaI | CCWGG | 4 cut(s) | 47, 505, 1533, 2648 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 102, 1516, 1601, 2054 |
| NdeI | CATATG | 1 cut(s) | 2062 |
| NlaIV | GGNNCC | 7 cut(s) | 88, 835, 1353, 1576, 1605, 2011, 2401 |
| NmeAIII | GCCGAG | 1 cut(s) | 1375 |
| NspI | RCATGY | 6 cut(s) | 125, 222, 283, 577, 1336, 1567 |
| NspV | TTCGAA | 1 cut(s) | 2716 |
| PaeI | GCATGC | 1 cut(s) | 222 |
| PagI | TCATGA | 1 cut(s) | 1114 |
| PceI | AGGCCT | 2 cut(s) | 147, 923 |
| PciI | ACATGT | 3 cut(s) | 279, 573, 1563 |
| PciSI | GCTCTTC | 2 cut(s) | 132, 1914 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1105 |
| PctI | GAATGC | 2 cut(s) | 96, 1207 |
| PdmI | GAANNNNTTC | 2 cut(s) | 984, 2121 |
| PfoI | TCCNGGA | 2 cut(s) | 503, 2646 |
| PkrI | GCNGC | 3 cut(s) | 200, 289, 941 |
| PleI | GAGTC | 5 cut(s) | 166, 414, 986, 1053, 2287 |
| PmeI | GTTTAAAC | 1 cut(s) | 139 |
| PpsI | GAGTC | 5 cut(s) | 166, 414, 986, 1053, 2287 |
| PpuMI | RGGWCCY | 1 cut(s) | 833 |
| PscI | ACATGT | 3 cut(s) | 279, 573, 1563 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1044 |
| PshBI | ATTAAT | 1 cut(s) | 702 |
| Psp124BI | GAGCTC | 1 cut(s) | 1295 |
| Psp5II | RGGWCCY | 1 cut(s) | 833 |
| Psp6I | CCWGG | 4 cut(s) | 45, 503, 1531, 2646 |
| PspFI | CCCAGC | 1 cut(s) | 2566 |
| PspGI | CCWGG | 4 cut(s) | 45, 503, 1531, 2646 |
| PspN4I | GGNNCC | 7 cut(s) | 88, 835, 1353, 1576, 1605, 2011, 2401 |
| PspPI | GGNCC | 6 cut(s) | 352, 833, 1352, 1920, 1984, 2456 |
| PspPPI | RGGWCCY | 1 cut(s) | 833 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2131 |
| PsuI | RGATCY | 7 cut(s) | 449, 883, 1180, 1450, 1477, 1513, 1574 |
| RsaI | GTAC | 2 cut(s) | 1819, 2560 |
| RsaNI | GTAC | 2 cut(s) | 1818, 2559 |
| RseI | CAYNNNNRTG | 3 cut(s) | 860, 1254, 2523 |
| SacI | GAGCTC | 1 cut(s) | 1295 |
| SapI | GCTCTTC | 2 cut(s) | 132, 1914 |
| SatI | GCNGC | 3 cut(s) | 199, 288, 940 |
| Sau96I | GGNCC | 6 cut(s) | 352, 833, 1352, 1920, 1984, 2456 |
| SchI | GAGTC | 5 cut(s) | 167, 415, 986, 1054, 2288 |
| ScrFI | CCNGG | 4 cut(s) | 47, 505, 1533, 2648 |
| SduI | GDGCHC | 3 cut(s) | 1295, 1539, 1909 |
| SfaNI | GCATC | 1 cut(s) | 2044 |
| SfuI | TTCGAA | 1 cut(s) | 2716 |
| SinI | GGWCC | 6 cut(s) | 352, 833, 1352, 1920, 1984, 2456 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 860, 1254, 2523 |
| SmlI | CTYRAG | 5 cut(s) | 559, 1028, 1042, 1915, 2496 |
| SmoI | CTYRAG | 5 cut(s) | 559, 1028, 1042, 1915, 2496 |
| SphI | GCATGC | 1 cut(s) | 222 |
| SseBI | AGGCCT | 2 cut(s) | 147, 923 |
| SsiI | CCGC | 2 cut(s) | 447, 1959 |
| SspI | AATATT | 2 cut(s) | 765, 1898 |
| SspMI | CTAG | 8 cut(s) | 872, 881, 1164, 1239, 1416, 1437, 1485, 2396 |
| SstI | GAGCTC | 1 cut(s) | 1295 |
| StuI | AGGCCT | 2 cut(s) | 147, 923 |
| StyD4I | CCNGG | 4 cut(s) | 45, 503, 1531, 2646 |
| StyI | CCWWGG | 2 cut(s) | 1840, 2443 |
| TaaI | ACNGT | 4 cut(s) | 1611, 1644, 1817, 2563 |
| TaiI | ACGT | 3 cut(s) | 1111, 1328, 2364 |
| TaqI | TCGA | 5 cut(s) | 1556, 1623, 2286, 2333, 2716 |
| TatI | WGTACW | 2 cut(s) | 1817, 2558 |
| TscAI | CASTG | 3 cut(s) | 642, 2469, 2568 |
| TseI | GCWGC | 3 cut(s) | 198, 287, 939 |
| TspDTI | ATGAA | 8 cut(s) | 382, 758, 791, 1056, 1103, 1964, 2087, 2563 |
| TspRI | CASTG | 3 cut(s) | 642, 2469, 2568 |
| Vha464I | CTTAAG | 1 cut(s) | 1915 |
| VpaK11BI | GGWCC | 6 cut(s) | 352, 833, 1352, 1920, 1984, 2456 |
| VspI | ATTAAT | 1 cut(s) | 702 |
| XbaI | TCTAGA | 1 cut(s) | 880 |
| XceI | RCATGY | 6 cut(s) | 125, 222, 283, 577, 1336, 1567 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1978 |
| XmiI | GTMKAC | 2 cut(s) | 16, 2688 |
| XmnI | GAANNNNTTC | 2 cut(s) | 984, 2121 |
| XspI | CTAG | 8 cut(s) | 872, 881, 1164, 1239, 1416, 1437, 1485, 2396 |