Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000452

Physical Location & Seq

Genomic Coordinates Reverse (-)

16931548 .. 16932503

Gene Structure 956 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0101900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCGGACGAGGTTATTCTATTGGACGCTTATGCGAGCGTGTTTGGGATGAGGGTCAGAGTAGCTCTGGCCGAGAAGGGAATCAAATATGACTACAGAGAAGAAGACCTGAGGAACAAGAGCCAACTGCTTCTTAAGATGAACCCGGTCCACAAGAAGATCCCGGTGCTCATCCATAATGGCAAACCAGTCTGTGAATCGCTCATCATTGTGCATTATATTGATGAGGTATGGAAGGATAAGGCTCCTCTGCTTCCCTCTGATCCTTACCAGAGAGCCCAGGCCAGATTCTGGGCCGATTTCATTGATAAGAAGTTATATGATGCAATCAGGAAGATATGGCCTGCAAAAGGAGAAGAGCAGGAAGCAGGAAAGAAGGAATTCATTGAAGTCCTGAAGGTGTTGGAAGGAGAGCTTGGGGGCAAGCCTTATTTCATGGGTGAGAGATTTGGGTTCCTGGACATTTCTCTCATCACATTCTACAGCTGGTTTCATGCTTGTGAGACACTTGGAAACTTCAGTATAAAGGCCGAGTGCGCCAAGCTGATTTCATGGGCCAAGAGATGCTTGCAGAAGGAGAGTGTTTCGAAGTCTCTTGCTGACCCGAAAAAGGTTTATGAGAATCTTCTTGAGATGCAAAAGAGGCTTGGTGTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

219

Amino Acids

25.3

Weight (kDa)

8.51

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	5 - 76	7.1e-19	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	7 - 76	2e-15	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	13 - 76	2e-13	Glutathione S-transferase, N-terminal domain
GST_C_2	PF13410	121 - 187	9.3e-09	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000452)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	291
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	154, 257
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	2 cut(s)	416, 502
AfiI	CCNNNNNNNGG	3 cut(s)	291, 350, 610
AflII	CTTAAG	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	389
AjnI	CCWGG	2 cut(s)	279, 456
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AluBI	AGCT	4 cut(s)	65, 415, 486, 544
AluI	AGCT	4 cut(s)	65, 415, 486, 544
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	2 cut(s)	497, 597
AlwI	GGATC	2 cut(s)	154, 257
AlwNI	CAGNNNCTG	1 cut(s)	291
AoxI	GGCC	6 cut(s)	69, 282, 294, 341, 528, 555
ApoI	RAATTY	1 cut(s)	380
Asp700I	GAANNNNTTC	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	539
AspS9I	GGNCC	3 cut(s)	148, 294, 555
AsuC2I	CCSGG	2 cut(s)	146, 164
AsuHPI	GGTGA	1 cut(s)	452
AsuII	TTCGAA	1 cut(s)	587
AvaII	GGWCC	1 cut(s)	148
AxyI	CCTNAGG	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	171
BciT130I	CCWGG	2 cut(s)	281, 458
BcnI	CCSGG	2 cut(s)	146, 164
BcoDI	GTCTC	2 cut(s)	497, 597
BfmI	CTRYAG	2 cut(s)	94, 481
BfrI	CTTAAG	1 cut(s)	134
Bme1390I	CCNGG	4 cut(s)	146, 164, 281, 458
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	3 cut(s)	148, 294, 555
BmiI	GGNNCC	2 cut(s)	246, 455
BmrFI	CCNGG	4 cut(s)	146, 164, 281, 458
BmsI	GCATC	3 cut(s)	313, 554, 624
BpiI	GAAGAC	1 cut(s)	111
Bpu14I	TTCGAA	1 cut(s)	587
BpuEI	CTTGAG	1 cut(s)	650
BpuMI	CCSGG	2 cut(s)	146, 164
BsaJI	CCNNGG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	3 cut(s)	291, 350, 610
Bse1I	ACTGG	1 cut(s)	188
Bse21I	CCTNAGG	1 cut(s)	110
BseBI	CCWGG	2 cut(s)	281, 458
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	2 cut(s)	54, 171
BseLI	CCNNNNNNNGG	3 cut(s)	291, 350, 610
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	188
BseRI	GAGGAG	1 cut(s)	237
BshFI	GGCC	6 cut(s)	71, 284, 296, 343, 530, 557
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	146, 164
BslI	CCNNNNNNNGG	3 cut(s)	291, 350, 610
BsmAI	GTCTC	2 cut(s)	497, 597
BsnI	GGCC	6 cut(s)	71, 284, 296, 343, 530, 557
Bsp119I	TTCGAA	1 cut(s)	587
Bsp1286I	GDGCHC	2 cut(s)	171, 280
Bsp143I	GATC	2 cut(s)	159, 262
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	6 cut(s)	71, 284, 296, 343, 530, 557
BspCNI	CTCAG	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	246, 455
BspPI	GGATC	2 cut(s)	154, 257
BspQI	GCTCTTC	1 cut(s)	351
BspT104I	TTCGAA	1 cut(s)	587
BspTI	CTTAAG	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	2 cut(s)	159, 262
Bst2UI	CCWGG	2 cut(s)	281, 458
Bst6I	CTCTTC	1 cut(s)	351
BstAFI	CTTAAG	1 cut(s)	134
BstBI	TTCGAA	1 cut(s)	587
BstC8I	GCNNGC	4 cut(s)	37, 345, 425, 569
BstDEI	CTNAG	1 cut(s)	110
BstENI	CCTNNNNNAGG	1 cut(s)	348
BstF5I	GGATG	2 cut(s)	54, 171
BstHHI	GCGC	1 cut(s)	539
BstKTI	GATC	2 cut(s)	162, 265
BstMAI	GTCTC	2 cut(s)	497, 597
BstMBI	GATC	2 cut(s)	159, 262
BstMWI	GCNNNNNNNGC	2 cut(s)	536, 643
BstNI	CCWGG	2 cut(s)	281, 458
BstSCI	CCNGG	4 cut(s)	144, 162, 279, 456
BstSFI	CTRYAG	2 cut(s)	94, 481
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
Bsu36I	CCTNAGG	1 cut(s)	110
BsuRI	GGCC	6 cut(s)	71, 284, 296, 343, 530, 557
BtsCI	GGATG	2 cut(s)	54, 171
Cac8I	GCNNGC	4 cut(s)	37, 345, 425, 569
CaiI	CAGNNNCTG	1 cut(s)	291
CfoI	GCGC	1 cut(s)	539
Cfr13I	GGNCC	3 cut(s)	148, 294, 555
CseI	GACGC	1 cut(s)	35
CviAII	CATG	3 cut(s)	436, 494, 552
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	2 cut(s)	161, 264
DpnII	GATC	2 cut(s)	159, 262
EaeI	YGGCCR	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	148
Eco57I	CTGAAG	2 cut(s)	416, 502
Eco81I	CCTNAGG	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	348
EcoRI	GAATTC	1 cut(s)	380
EcoRII	CCWGG	2 cut(s)	279, 456
EcoT38I	GRGCYC	1 cut(s)	280
FaeI	CATG	3 cut(s)	439, 497, 555
FalI	AAGNNNNNCTT	4 cut(s)	399, 431, 551, 583
FatI	CATG	3 cut(s)	435, 493, 551
FokI	GGATG	2 cut(s)	61, 158
FriOI	GRGCYC	1 cut(s)	280
GlaI	GCGC	1 cut(s)	538
HaeIII	GGCC	6 cut(s)	71, 284, 296, 343, 530, 557
HapII	CCGG	2 cut(s)	146, 164
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	539
Hin1II	CATG	3 cut(s)	439, 497, 555
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HinfI	GANTC	4 cut(s)	81, 197, 288, 622
HpaII	CCGG	2 cut(s)	146, 164
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	59, 262
Hpy188III	TCNNGA	3 cut(s)	331, 394, 629
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	6 cut(s)	70, 229, 370, 391, 401, 568
HpyCH4V	TGCA	5 cut(s)	214, 326, 347, 571, 637
HpyF10VI	GCNNNNNNNGC	2 cut(s)	536, 643
HpyF3I	CTNAG	1 cut(s)	110
Hsp92II	CATG	3 cut(s)	439, 497, 555
HspAI	GCGC	1 cut(s)	537
Kzo9I	GATC	2 cut(s)	159, 262
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	1 cut(s)	250
LweI	GCATC	3 cut(s)	313, 554, 624
MalI	GATC	2 cut(s)	161, 264
MboI	GATC	2 cut(s)	159, 262
MboII	GAAGA	6 cut(s)	113, 116, 169, 346, 368, 617
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	2 cut(s)	171, 280
MluCI	AATT	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	7 cut(s)	4, 45, 105, 220, 258, 268, 636
MroXI	GAANNNNTTC	1 cut(s)	380
MseI	TTAA	1 cut(s)	135
MslI	CAYNNNNRTG	2 cut(s)	209, 498
MspA1I	CMGCKG	1 cut(s)	486
MspCI	CTTAAG	1 cut(s)	134
MspI	CCGG	2 cut(s)	146, 164
MspR9I	CCNGG	4 cut(s)	146, 164, 281, 458
MvaI	CCWGG	2 cut(s)	281, 458
MwoI	GCNNNNNNNGC	2 cut(s)	536, 643
NciI	CCSGG	2 cut(s)	146, 164
NdeII	GATC	2 cut(s)	159, 262
NlaIII	CATG	3 cut(s)	439, 497, 555
NlaIV	GGNNCC	2 cut(s)	246, 455
NmeAIII	GCCGAG	2 cut(s)	97, 556
NspV	TTCGAA	1 cut(s)	587
PciSI	GCTCTTC	1 cut(s)	351
PdmI	GAANNNNTTC	1 cut(s)	380
PfeI	GAWTC	4 cut(s)	81, 197, 288, 622
PflMI	CCANNNNNTGG	1 cut(s)	291
PfoI	TCCNGGA	1 cut(s)	456
Psp6I	CCWGG	2 cut(s)	279, 456
PspGI	CCWGG	2 cut(s)	279, 456
PspN4I	GGNNCC	2 cut(s)	246, 455
PspPI	GGNCC	3 cut(s)	148, 294, 555
PstNI	CAGNNNCTG	1 cut(s)	291
PsuI	RGATCY	1 cut(s)	159
PvuII	CAGCTG	1 cut(s)	486
RseI	CAYNNNNRTG	2 cut(s)	209, 498
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	135
Sau3AI	GATC	2 cut(s)	159, 262
Sau96I	GGNCC	3 cut(s)	148, 294, 555
ScrFI	CCNGG	4 cut(s)	146, 164, 281, 458
SduI	GDGCHC	2 cut(s)	171, 280
SetI	ASST	9 cut(s)	15, 67, 111, 231, 402, 417, 488, 546, 615
SfaNI	GCATC	3 cut(s)	313, 554, 624
SfcI	CTRYAG	2 cut(s)	94, 481
SfuI	TTCGAA	1 cut(s)	587
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	2 cut(s)	209, 498
SmlI	CTYRAG	2 cut(s)	134, 629
SmoI	CTYRAG	2 cut(s)	134, 629
Sse9I	AATT	1 cut(s)	380
SsiI	CCGC	1 cut(s)	5
StyD4I	CCNGG	4 cut(s)	144, 162, 279, 456
TaqI	TCGA	1 cut(s)	587
TasI	AATT	1 cut(s)	380
TfiI	GAWTC	4 cut(s)	81, 197, 288, 622
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TspDTI	ATGAA	6 cut(s)	155, 292, 373, 424, 482, 540
Van91I	CCANNNNNTGG	1 cut(s)	291
Vha464I	CTTAAG	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	148
XagI	CCTNNNNNAGG	1 cut(s)	348
XapI	RAATTY	1 cut(s)	380
XmnI	GAANNNNTTC	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.